data_9PA # _chem_comp.id 9PA _chem_comp.name "5-[(2S)-2-{[(5-aminopentanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-23 _chem_comp.pdbx_modified_date 2014-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CJL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PA O1 O1 O 0 1 N N N -12.554 46.611 -13.999 4.475 -2.037 0.567 O1 9PA 1 9PA C2 C2 C 0 1 N N N -13.292 45.769 -14.581 3.502 -1.163 0.890 C2 9PA 2 9PA O3 O3 O 0 1 N N N -14.407 45.374 -14.147 2.834 -1.339 1.889 O3 9PA 3 9PA C4 C4 C 0 1 Y N N -12.835 45.229 -15.896 3.249 0.009 0.031 C4 9PA 4 9PA C5 C5 C 0 1 Y N N -13.727 45.234 -16.945 3.843 1.241 0.329 C5 9PA 5 9PA O6 O6 O 0 1 N N N -15.018 45.684 -16.900 4.680 1.621 1.334 O6 9PA 6 9PA C7 C7 C 0 1 N N N -15.503 45.116 -18.122 4.622 3.060 1.360 C7 9PA 7 9PA O8 O8 O 0 1 N N N -14.458 44.856 -19.059 4.283 3.413 0.006 O8 9PA 8 9PA C9 C9 C 0 1 Y N N -13.412 44.760 -18.181 3.597 2.341 -0.489 C9 9PA 9 9PA C10 C10 C 0 1 Y N N -12.167 44.251 -18.451 2.768 2.211 -1.590 C10 9PA 10 9PA C11 C11 C 0 1 Y N N -11.255 44.239 -17.417 2.179 0.992 -1.884 C11 9PA 11 9PA C12 C12 C 0 1 Y N N -11.569 44.724 -16.152 2.419 -0.107 -1.088 C12 9PA 12 9PA C13 C13 C 0 1 N N N -10.511 44.640 -15.093 1.774 -1.429 -1.415 C13 9PA 13 9PA C14 C14 C 0 1 N N S -9.167 45.233 -15.449 0.473 -1.572 -0.624 C14 9PA 14 9PA C15 C15 C 0 1 N N N -9.279 46.731 -15.655 -0.530 -0.519 -1.097 C15 9PA 15 9PA N16 N16 N 0 1 N N N -9.908 47.399 -14.536 -1.687 -0.508 -0.198 N16 9PA 16 9PA C17 C17 C 0 1 N N N -9.203 48.329 -13.803 -2.770 0.235 -0.503 C17 9PA 17 9PA O18 O18 O 0 1 N N N -8.036 48.637 -13.999 -2.787 0.894 -1.521 O18 9PA 18 9PA C19 C19 C 0 1 N N N -10.024 48.964 -12.721 -3.960 0.247 0.422 C19 9PA 19 9PA C20 C20 C 0 1 N N N -9.461 48.572 -11.376 -5.043 1.162 -0.153 C20 9PA 20 9PA C21 C21 C 0 1 N N N -10.470 48.914 -10.304 -6.252 1.173 0.786 C21 9PA 21 9PA C22 C22 C 0 1 N N N -9.763 49.078 -8.979 -7.335 2.089 0.212 C22 9PA 22 9PA N23 N23 N 0 1 N N N -10.770 49.401 -7.934 -8.495 2.100 1.113 N23 9PA 23 9PA C24 C24 C 0 1 N N N -8.174 44.964 -14.329 -0.110 -2.969 -0.849 C24 9PA 24 9PA C25 C25 C 0 1 N N N -7.935 43.490 -14.015 -1.311 -3.176 0.077 C25 9PA 25 9PA C26 C26 C 0 1 N N N -7.532 42.705 -15.251 -1.931 -4.549 -0.191 C26 9PA 26 9PA C27 C27 C 0 1 N N N -6.847 43.385 -12.957 -0.851 -3.099 1.534 C27 9PA 27 9PA HO1 HO1 H 0 1 N N N -12.970 46.894 -13.193 4.603 -2.790 1.160 HO1 9PA 28 9PA H7 H7 H 0 1 N N N -16.014 44.169 -17.892 3.848 3.399 2.049 H7 9PA 29 9PA H7A H7A H 0 1 N N N -16.218 45.817 -18.577 5.589 3.478 1.637 H7A 9PA 30 9PA H10 H10 H 0 1 N N N -11.912 43.876 -19.431 2.578 3.065 -2.223 H10 9PA 31 9PA H11 H11 H 0 1 N N N -10.267 43.841 -17.595 1.534 0.901 -2.745 H11 9PA 32 9PA H13 H13 H 0 1 N N N -10.885 45.165 -14.202 1.557 -1.473 -2.483 H13 9PA 33 9PA H13A H13A H 0 0 N N N -10.357 43.577 -14.855 2.453 -2.240 -1.149 H13A 9PA 34 9PA H14 H14 H 0 1 N N N -8.800 44.768 -16.375 0.676 -1.430 0.438 H14 9PA 35 9PA H15 H15 H 0 1 N N N -8.269 47.145 -15.790 -0.056 0.463 -1.091 H15 9PA 36 9PA H15A H15A H 0 0 N N N -9.877 46.919 -16.559 -0.859 -0.758 -2.109 H15A 9PA 37 9PA HN16 HN16 H 0 0 N N N -10.855 47.186 -14.294 -1.674 -1.035 0.616 HN16 9PA 38 9PA H19 H19 H 0 1 N N N -9.992 50.058 -12.829 -4.354 -0.765 0.520 H19 9PA 39 9PA H19A H19A H 0 0 N N N -11.065 48.619 -12.799 -3.655 0.614 1.402 H19A 9PA 40 9PA H20 H20 H 0 1 N N N -9.259 47.491 -11.361 -4.650 2.173 -0.251 H20 9PA 41 9PA H20A H20A H 0 0 N N N -8.526 49.122 -11.192 -5.348 0.794 -1.132 H20A 9PA 42 9PA H21 H21 H 0 1 N N N -10.979 49.853 -10.566 -6.645 0.162 0.884 H21 9PA 43 9PA H21A H21A H 0 0 N N N -11.211 48.105 -10.226 -5.947 1.541 1.766 H21A 9PA 44 9PA H22 H22 H 0 1 N N N -9.246 48.143 -8.718 -6.941 3.100 0.114 H22 9PA 45 9PA H22A H22A H 0 0 N N N -9.029 49.895 -9.050 -7.639 1.721 -0.768 H22A 9PA 46 9PA HN23 HN23 H 0 0 N N N -10.312 49.512 -7.052 -8.226 2.376 2.046 HN23 9PA 47 9PA HN2A HN2A H 0 0 N N N -11.239 50.251 -8.175 -9.225 2.698 0.756 HN2A 9PA 48 9PA H24 H24 H 0 1 N N N -7.211 45.412 -14.613 -0.430 -3.067 -1.886 H24 9PA 49 9PA H24A H24A H 0 0 N N N -8.550 45.450 -13.417 0.650 -3.719 -0.631 H24A 9PA 50 9PA H25 H25 H 0 1 N N N -8.864 43.061 -13.611 -2.052 -2.399 -0.112 H25 9PA 51 9PA H26 H26 H 0 1 N N N -7.370 41.651 -14.980 -1.219 -5.328 0.082 H26 9PA 52 9PA H26A H26A H 0 0 N N N -8.331 42.771 -16.004 -2.837 -4.660 0.405 H26A 9PA 53 9PA H26B H26B H 0 0 N N N -6.603 43.124 -15.664 -2.178 -4.636 -1.249 H26B 9PA 54 9PA H27 H27 H 0 1 N N N -6.665 42.326 -12.721 -1.686 -3.338 2.192 H27 9PA 55 9PA H27A H27A H 0 0 N N N -5.921 43.840 -13.337 -0.043 -3.812 1.698 H27A 9PA 56 9PA H27B H27B H 0 0 N N N -7.168 43.913 -12.047 -0.495 -2.091 1.750 H27B 9PA 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PA C2 O1 SING N N 1 9PA O1 HO1 SING N N 2 9PA C4 C2 SING N N 3 9PA C2 O3 DOUB N N 4 9PA C5 C4 DOUB Y N 5 9PA C12 C4 SING Y N 6 9PA C9 C5 SING Y N 7 9PA C5 O6 SING N N 8 9PA C7 O6 SING N N 9 9PA O8 C7 SING N N 10 9PA C7 H7 SING N N 11 9PA C7 H7A SING N N 12 9PA O8 C9 SING N N 13 9PA C10 C9 DOUB Y N 14 9PA C10 C11 SING Y N 15 9PA C10 H10 SING N N 16 9PA C11 C12 DOUB Y N 17 9PA C11 H11 SING N N 18 9PA C12 C13 SING N N 19 9PA C14 C13 SING N N 20 9PA C13 H13 SING N N 21 9PA C13 H13A SING N N 22 9PA C15 C14 SING N N 23 9PA C14 C24 SING N N 24 9PA C14 H14 SING N N 25 9PA C15 N16 SING N N 26 9PA C15 H15 SING N N 27 9PA C15 H15A SING N N 28 9PA N16 C17 SING N N 29 9PA N16 HN16 SING N N 30 9PA O18 C17 DOUB N N 31 9PA C17 C19 SING N N 32 9PA C19 C20 SING N N 33 9PA C19 H19 SING N N 34 9PA C19 H19A SING N N 35 9PA C20 C21 SING N N 36 9PA C20 H20 SING N N 37 9PA C20 H20A SING N N 38 9PA C21 C22 SING N N 39 9PA C21 H21 SING N N 40 9PA C21 H21A SING N N 41 9PA C22 N23 SING N N 42 9PA C22 H22 SING N N 43 9PA C22 H22A SING N N 44 9PA N23 HN23 SING N N 45 9PA N23 HN2A SING N N 46 9PA C24 C25 SING N N 47 9PA C24 H24 SING N N 48 9PA C24 H24A SING N N 49 9PA C26 C25 SING N N 50 9PA C25 C27 SING N N 51 9PA C25 H25 SING N N 52 9PA C26 H26 SING N N 53 9PA C26 H26A SING N N 54 9PA C26 H26B SING N N 55 9PA C27 H27 SING N N 56 9PA C27 H27A SING N N 57 9PA C27 H27B SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PA SMILES ACDLabs 12.01 "O=C(O)c1c(ccc2OCOc12)CC(CC(C)C)CNC(=O)CCCCN" 9PA InChI InChI 1.03 "InChI=1S/C20H30N2O5/c1-13(2)9-14(11-22-17(23)5-3-4-8-21)10-15-6-7-16-19(27-12-26-16)18(15)20(24)25/h6-7,13-14H,3-5,8-12,21H2,1-2H3,(H,22,23)(H,24,25)/t14-/m0/s1" 9PA InChIKey InChI 1.03 PPUJEZUKUJTCNK-AWEZNQCLSA-N 9PA SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](CNC(=O)CCCCN)Cc1ccc2OCOc2c1C(O)=O" 9PA SMILES CACTVS 3.385 "CC(C)C[CH](CNC(=O)CCCCN)Cc1ccc2OCOc2c1C(O)=O" 9PA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)CCCCN" 9PA SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)CCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9PA "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(2S)-2-{[(5-aminopentanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid" 9PA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[(2S)-2-[(5-azanylpentanoylamino)methyl]-4-methyl-pentyl]-1,3-benzodioxole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PA "Create component" 2013-12-23 EBI 9PA "Initial release" 2014-01-08 RCSB #