data_9PE
#
_chem_comp.id 9PE
_chem_comp.name "(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H60 N O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-04-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 593.773
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9PE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CX5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9PE P P P 0 1 N N S 12.706 8.533 58.505 -5.574 2.729 -0.696 P 9PE 1
9PE N N N 0 1 N N N 15.090 10.597 62.204 -8.658 0.669 -3.064 N 9PE 2
9PE O11 O11 O 0 1 N N N 12.847 7.001 58.665 -4.967 1.706 0.389 O11 9PE 3
9PE O12 O12 O 0 1 N N N 13.006 8.873 57.070 -6.527 3.645 -0.032 O12 9PE 4
9PE O13 O13 O 0 1 N N N 13.720 9.299 59.434 -6.338 1.901 -1.846 O13 9PE 5
9PE O14 O14 O 0 1 N N N 11.273 8.969 58.785 -4.378 3.584 -1.355 O14 9PE 6
9PE C11 C11 C 0 1 N N N 13.620 9.087 60.869 -7.072 2.528 -2.899 C11 9PE 7
9PE C12 C12 C 0 1 N N N 13.686 10.380 61.735 -7.669 1.455 -3.813 C12 9PE 8
9PE C1 C1 C 0 1 N N N 11.734 6.230 59.034 -4.321 2.137 1.589 C1 9PE 9
9PE C2 C2 C 0 1 N N R 12.103 4.795 58.687 -3.866 0.916 2.390 C2 9PE 10
9PE C3 C3 C 0 1 N N N 12.201 3.849 59.922 -5.062 -0.005 2.639 C3 9PE 11
9PE O31 O31 O 0 1 N N N 12.557 2.557 59.408 -5.685 -0.343 1.371 O31 9PE 12
9PE O32 O32 O 0 1 N N N 12.600 1.701 61.487 -7.161 -1.561 2.477 O32 9PE 13
9PE C31 C31 C 0 1 N N N 12.717 1.598 60.311 -6.756 -1.150 1.415 C31 9PE 14
9PE C32 C32 C 0 1 N N N 13.091 0.286 59.649 -7.455 -1.545 0.139 C32 9PE 15
9PE C33 C33 C 0 1 N N N 13.433 0.320 58.166 -8.635 -2.461 0.466 C33 9PE 16
9PE C34 C34 C 0 1 N N N 13.734 -1.107 57.714 -9.344 -2.862 -0.830 C34 9PE 17
9PE C35 C35 C 0 1 N N N 13.536 -1.333 56.214 -10.525 -3.779 -0.502 C35 9PE 18
9PE C36 C36 C 0 1 N N N 13.872 -2.798 55.880 -11.234 -4.179 -1.798 C36 9PE 19
9PE C37 C37 C 0 1 N N N 13.480 -3.197 54.457 -12.414 -5.096 -1.471 C37 9PE 20
9PE O21 O21 O 0 1 N N N 11.138 4.292 57.766 -2.849 0.197 1.643 O21 9PE 21
9PE O22 O22 O 0 1 N N N 13.016 3.946 56.413 -1.313 1.439 2.633 O22 9PE 22
9PE C21 C21 C 0 1 N N N 11.792 3.894 56.624 -1.573 0.555 1.852 C21 9PE 23
9PE C22 C22 C 0 1 N N N 10.800 3.361 55.593 -0.463 -0.146 1.111 C22 9PE 24
9PE C23 C23 C 0 1 N N N 11.492 2.911 54.285 0.883 0.448 1.529 C23 9PE 25
9PE C24 C24 C 0 1 N N N 11.811 1.434 54.368 2.010 -0.263 0.777 C24 9PE 26
9PE C25 C25 C 0 1 N N N 11.407 0.711 53.081 3.357 0.331 1.195 C25 9PE 27
9PE C26 C26 C 0 1 N N N 12.530 0.870 52.063 4.484 -0.381 0.444 C26 9PE 28
9PE C27 C27 C 0 1 N N N 12.707 -0.372 51.159 5.830 0.213 0.861 C27 9PE 29
9PE C28 C28 C 0 1 N N N 13.367 -0.158 49.786 6.957 -0.498 0.110 C28 9PE 30
9PE C29 C29 C 0 1 N N N 14.857 -0.522 49.980 8.303 0.096 0.528 C29 9PE 31
9PE C2A C2A C 0 1 N N N 15.787 -0.135 48.805 9.430 -0.616 -0.224 C2A 9PE 32
9PE C2B C2B C 0 1 N N N 17.025 0.633 49.325 10.777 -0.022 0.194 C2B 9PE 33
9PE C2C C2C C 0 1 N N N 18.252 0.109 48.536 11.903 -0.733 -0.558 C2C 9PE 34
9PE C2D C2D C 0 1 N N N 19.469 -0.028 49.461 13.250 -0.139 -0.140 C2D 9PE 35
9PE C2E C2E C 0 1 N N N 20.539 -0.948 48.841 14.377 -0.851 -0.891 C2E 9PE 36
9PE C2F C2F C 0 1 N N N 20.561 -2.275 49.621 15.723 -0.257 -0.474 C2F 9PE 37
9PE C2G C2G C 0 1 N N N 21.593 -3.270 49.060 16.850 -0.969 -1.225 C2G 9PE 38
9PE C2H C2H C 0 1 N N N 20.872 -4.387 48.277 18.197 -0.374 -0.808 C2H 9PE 39
9PE C2I C2I C 0 1 N N N 21.905 -5.339 47.630 19.323 -1.086 -1.559 C2I 9PE 40
9PE HN HN H 0 1 N N N 15.702 10.645 61.415 -9.370 1.265 -2.670 HN 9PE 41
9PE HNA HNA H 0 1 N N N 15.141 11.453 62.718 -9.067 -0.047 -3.646 HNA 9PE 42
9PE HO14 HO14 H 0 0 N N N 11.147 9.060 59.722 -3.714 3.046 -1.808 HO14 9PE 43
9PE H11 H11 H 0 1 N N N 12.653 8.602 61.067 -7.875 3.130 -2.474 H11 9PE 44
9PE H11A H11A H 0 0 N N N 14.492 8.480 61.153 -6.405 3.167 -3.477 H11A 9PE 45
9PE H12 H12 H 0 1 N N N 13.022 10.272 62.605 -6.876 0.798 -4.168 H12 9PE 46
9PE H12A H12A H 0 0 N N N 13.364 11.242 61.131 -8.154 1.933 -4.665 H12A 9PE 47
9PE H1 H1 H 0 1 N N N 11.527 6.332 60.109 -3.455 2.748 1.335 H1 9PE 48
9PE H1A H1A H 0 1 N N N 10.823 6.554 58.510 -5.018 2.725 2.186 H1A 9PE 49
9PE H2 H2 H 0 1 N N N 13.111 4.815 58.247 -3.453 1.241 3.345 H2 9PE 50
9PE H3 H3 H 0 1 N N N 12.966 4.210 60.626 -4.723 -0.916 3.132 H3 9PE 51
9PE H3A H3A H 0 1 N N N 11.250 3.812 60.474 -5.787 0.504 3.275 H3A 9PE 52
9PE H32 H32 H 0 1 N N N 13.980 -0.094 60.173 -7.819 -0.650 -0.368 H32 9PE 53
9PE H32A H32A H 0 0 N N N 12.187 -0.337 59.719 -6.755 -2.071 -0.511 H32A 9PE 54
9PE H33 H33 H 0 1 N N N 12.583 0.722 57.595 -8.271 -3.356 0.972 H33 9PE 55
9PE H33A H33A H 0 0 N N N 14.307 0.966 57.992 -9.335 -1.935 1.115 H33A 9PE 56
9PE H34 H34 H 0 1 N N N 14.784 -1.327 57.957 -9.708 -1.968 -1.336 H34 9PE 57
9PE H34A H34A H 0 0 N N N 13.027 -1.768 58.237 -8.645 -3.388 -1.479 H34A 9PE 58
9PE H35 H35 H 0 1 N N N 12.491 -1.122 55.943 -10.161 -4.673 0.004 H35 9PE 59
9PE H35A H35A H 0 0 N N N 14.197 -0.661 55.646 -11.224 -3.253 0.147 H35A 9PE 60
9PE H36 H36 H 0 1 N N N 14.958 -2.936 55.989 -11.597 -3.285 -2.304 H36 9PE 61
9PE H36A H36A H 0 0 N N N 13.296 -3.433 56.570 -10.534 -4.705 -2.447 H36A 9PE 62
9PE H37 H37 H 0 1 N N N 13.386 -2.294 53.835 -13.114 -4.570 -0.821 H37 9PE 63
9PE H37A H37A H 0 0 N N N 14.254 -3.854 54.034 -12.919 -5.381 -2.393 H37A 9PE 64
9PE H37B H37B H 0 0 N N N 12.518 -3.730 54.478 -12.050 -5.990 -0.964 H37B 9PE 65
9PE H22 H22 H 0 1 N N N 10.277 2.496 56.027 -0.481 -1.209 1.351 H22 9PE 66
9PE H22A H22A H 0 0 N N N 10.104 4.176 55.343 -0.601 -0.013 0.038 H22A 9PE 67
9PE H23 H23 H 0 1 N N N 10.821 3.094 53.433 0.902 1.512 1.289 H23 9PE 68
9PE H23A H23A H 0 0 N N N 12.423 3.481 54.147 1.022 0.316 2.602 H23A 9PE 69
9PE H24 H24 H 0 1 N N N 12.893 1.310 54.522 1.992 -1.326 1.017 H24 9PE 70
9PE H24A H24A H 0 0 N N N 11.246 1.000 55.206 1.872 -0.131 -0.296 H24A 9PE 71
9PE H25 H25 H 0 1 N N N 11.242 -0.356 53.290 3.375 1.394 0.955 H25 9PE 72
9PE H25A H25A H 0 0 N N N 10.476 1.142 52.684 3.495 0.198 2.268 H25A 9PE 73
9PE H26 H26 H 0 1 N N N 12.296 1.733 51.422 4.465 -1.444 0.684 H26 9PE 74
9PE H26A H26A H 0 0 N N N 13.467 1.008 52.623 4.345 -0.248 -0.629 H26A 9PE 75
9PE H27 H27 H 0 1 N N N 13.340 -1.083 51.711 5.848 1.276 0.622 H27 9PE 76
9PE H27A H27A H 0 0 N N N 11.685 -0.712 50.936 5.969 0.081 1.934 H27A 9PE 77
9PE H28 H28 H 0 1 N N N 12.903 -0.803 49.025 6.939 -1.561 0.350 H28 9PE 78
9PE H28A H28A H 0 0 N N N 13.245 0.877 49.434 6.818 -0.366 -0.963 H28A 9PE 79
9PE H29 H29 H 0 1 N N N 15.215 0.006 50.876 8.322 1.159 0.288 H29 9PE 80
9PE H29A H29A H 0 0 N N N 14.900 -1.618 50.060 8.442 -0.037 1.601 H29A 9PE 81
9PE H2A H2A H 0 1 N N N 16.119 -1.049 48.292 9.412 -1.679 0.016 H2A 9PE 82
9PE H2AA H2AA H 0 0 N N N 15.232 0.512 48.109 9.292 -0.483 -1.297 H2AA 9PE 83
9PE H2B H2B H 0 1 N N N 16.900 1.713 49.161 10.795 1.041 -0.046 H2B 9PE 84
9PE H2BA H2BA H 0 0 N N N 17.158 0.473 50.405 10.915 -0.154 1.267 H2BA 9PE 85
9PE H2C H2C H 0 1 N N N 18.012 -0.876 48.109 11.885 -1.797 -0.318 H2C 9PE 86
9PE H2CA H2CA H 0 0 N N N 18.492 0.824 47.736 11.765 -0.601 -1.631 H2CA 9PE 87
9PE H2D H2D H 0 1 N N N 19.907 0.968 49.624 13.268 0.924 -0.380 H2D 9PE 88
9PE H2DA H2DA H 0 0 N N N 19.137 -0.470 50.412 13.389 -0.272 0.933 H2DA 9PE 89
9PE H2E H2E H 0 1 N N N 20.296 -1.142 47.786 14.359 -1.914 -0.651 H2E 9PE 90
9PE H2EA H2EA H 0 0 N N N 21.526 -0.465 48.896 14.238 -0.718 -1.964 H2EA 9PE 91
9PE H2F H2F H 0 1 N N N 20.818 -2.060 50.669 15.741 0.806 -0.714 H2F 9PE 92
9PE H2FA H2FA H 0 0 N N N 19.566 -2.735 49.530 15.862 -0.389 0.599 H2FA 9PE 93
9PE H2G H2G H 0 1 N N N 22.282 -2.739 48.386 16.832 -2.032 -0.985 H2G 9PE 94
9PE H2GA H2GA H 0 0 N N N 22.157 -3.716 49.893 16.712 -0.836 -2.298 H2GA 9PE 95
9PE H2H H2H H 0 1 N N N 20.235 -4.959 48.967 18.215 0.689 -1.047 H2H 9PE 96
9PE H2HA H2HA H 0 0 N N N 20.258 -3.932 47.486 18.335 -0.507 0.266 H2HA 9PE 97
9PE H2I H2I H 0 1 N N N 21.600 -5.565 46.598 19.305 -2.149 -1.319 H2I 9PE 98
9PE H2IA H2IA H 0 0 N N N 22.894 -4.857 47.623 19.185 -0.953 -2.632 H2IA 9PE 99
9PE H2IB H2IB H 0 0 N N N 21.956 -6.273 48.210 20.283 -0.663 -1.261 H2IB 9PE 100
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9PE O12 P DOUB N N 1
9PE P O11 SING N N 2
9PE P O14 SING N N 3
9PE P O13 SING N N 4
9PE C12 N SING N N 5
9PE N HN SING N N 6
9PE N HNA SING N N 7
9PE O11 C1 SING N N 8
9PE O13 C11 SING N N 9
9PE O14 HO14 SING N N 10
9PE C11 C12 SING N N 11
9PE C11 H11 SING N N 12
9PE C11 H11A SING N N 13
9PE C12 H12 SING N N 14
9PE C12 H12A SING N N 15
9PE C2 C1 SING N N 16
9PE C1 H1 SING N N 17
9PE C1 H1A SING N N 18
9PE O21 C2 SING N N 19
9PE C2 C3 SING N N 20
9PE C2 H2 SING N N 21
9PE O31 C3 SING N N 22
9PE C3 H3 SING N N 23
9PE C3 H3A SING N N 24
9PE O31 C31 SING N N 25
9PE C31 O32 DOUB N N 26
9PE C32 C31 SING N N 27
9PE C33 C32 SING N N 28
9PE C32 H32 SING N N 29
9PE C32 H32A SING N N 30
9PE C34 C33 SING N N 31
9PE C33 H33 SING N N 32
9PE C33 H33A SING N N 33
9PE C35 C34 SING N N 34
9PE C34 H34 SING N N 35
9PE C34 H34A SING N N 36
9PE C36 C35 SING N N 37
9PE C35 H35 SING N N 38
9PE C35 H35A SING N N 39
9PE C37 C36 SING N N 40
9PE C36 H36 SING N N 41
9PE C36 H36A SING N N 42
9PE C37 H37 SING N N 43
9PE C37 H37A SING N N 44
9PE C37 H37B SING N N 45
9PE C21 O21 SING N N 46
9PE O22 C21 DOUB N N 47
9PE C22 C21 SING N N 48
9PE C23 C22 SING N N 49
9PE C22 H22 SING N N 50
9PE C22 H22A SING N N 51
9PE C23 C24 SING N N 52
9PE C23 H23 SING N N 53
9PE C23 H23A SING N N 54
9PE C25 C24 SING N N 55
9PE C24 H24 SING N N 56
9PE C24 H24A SING N N 57
9PE C26 C25 SING N N 58
9PE C25 H25 SING N N 59
9PE C25 H25A SING N N 60
9PE C27 C26 SING N N 61
9PE C26 H26 SING N N 62
9PE C26 H26A SING N N 63
9PE C28 C27 SING N N 64
9PE C27 H27 SING N N 65
9PE C27 H27A SING N N 66
9PE C28 C29 SING N N 67
9PE C28 H28 SING N N 68
9PE C28 H28A SING N N 69
9PE C2A C29 SING N N 70
9PE C29 H29 SING N N 71
9PE C29 H29A SING N N 72
9PE C2A C2B SING N N 73
9PE C2A H2A SING N N 74
9PE C2A H2AA SING N N 75
9PE C2C C2B SING N N 76
9PE C2B H2B SING N N 77
9PE C2B H2BA SING N N 78
9PE C2C C2D SING N N 79
9PE C2C H2C SING N N 80
9PE C2C H2CA SING N N 81
9PE C2E C2D SING N N 82
9PE C2D H2D SING N N 83
9PE C2D H2DA SING N N 84
9PE C2E C2F SING N N 85
9PE C2E H2E SING N N 86
9PE C2E H2EA SING N N 87
9PE C2G C2F SING N N 88
9PE C2F H2F SING N N 89
9PE C2F H2FA SING N N 90
9PE C2H C2G SING N N 91
9PE C2G H2G SING N N 92
9PE C2G H2GA SING N N 93
9PE C2I C2H SING N N 94
9PE C2H H2H SING N N 95
9PE C2H H2HA SING N N 96
9PE C2I H2I SING N N 97
9PE C2I H2IA SING N N 98
9PE C2I H2IB SING N N 99
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9PE SMILES ACDLabs 10.04 "O=C(OCC(OC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(OCCN)O)CCCCCC"
9PE SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P@](O)(=O)OCCN"
9PE SMILES CACTVS 3.341 "CCCCCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCC)CO[P](O)(=O)OCCN"
9PE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P@@](=O)(O)OCCN"
9PE SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCC)COP(=O)(O)OCCN"
9PE InChI InChI 1.03 "InChI=1S/C30H60NO8P/c1-3-5-7-9-10-11-12-13-14-15-16-17-18-19-21-23-30(33)39-28(27-38-40(34,35)37-25-24-31)26-36-29(32)22-20-8-6-4-2/h28H,3-27,31H2,1-2H3,(H,34,35)/t28-/m1/s1"
9PE InChIKey InChI 1.03 RWBMCOYSJCETON-MUUNZHRXSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9PE "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate"
9PE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-(2-aminoethoxy-hydroxy-phosphoryl)oxy-3-heptanoyloxy-propan-2-yl] octadecanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9PE "Create component" 2008-04-28 RCSB
9PE "Modify descriptor" 2011-06-04 RCSB
9PE "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 9PE
_pdbx_chem_comp_synonyms.name 3-SN-PHOSPHATIDYLETHANOLAMINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##