data_9PN # _chem_comp.id 9PN _chem_comp.name ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(3-pyridin-1-ium-1-ylpropyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H43 N4 O15" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2017-06-20 _chem_comp.pdbx_modified_date 2018-04-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 675.659 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5O9Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PN C4 C1 C 0 1 N N R -9.071 13.305 21.774 4.632 1.815 1.357 C4 9PN 1 9PN C5 C2 C 0 1 N N R -9.537 11.868 22.032 3.308 2.300 1.952 C5 9PN 2 9PN C6 C3 C 0 1 N N N -8.551 11.128 22.941 3.566 3.506 2.857 C6 9PN 3 9PN C3 C4 C 0 1 N N S -10.146 14.069 21.006 4.359 0.646 0.406 C3 9PN 4 9PN CBP C5 C 0 1 Y N N -22.786 6.697 17.019 -9.651 -3.542 -0.354 CBP 9PN 5 9PN CBO C6 C 0 1 Y N N -23.042 6.416 15.681 -10.854 -3.579 -1.033 CBO 9PN 6 9PN CBT C7 C 0 1 Y N N -22.213 6.939 14.693 -11.825 -2.633 -0.742 CBT 9PN 7 9PN CBS C8 C 0 1 Y N N -21.124 7.742 15.037 -11.547 -1.679 0.225 CBS 9PN 8 9PN CBR C9 C 0 1 Y N N -20.854 8.033 16.376 -10.321 -1.704 0.863 CBR 9PN 9 9PN NBQ N1 N 1 1 Y N N -21.694 7.504 17.390 -9.422 -2.620 0.561 NBQ 9PN 10 9PN CBN C10 C 0 1 N N N -21.501 7.752 18.848 -8.137 -2.616 1.264 CBN 9PN 11 9PN CBU C11 C 0 1 N N N -20.150 8.342 19.194 -7.138 -1.748 0.496 CBU 9PN 12 9PN CBM C12 C 0 1 N N N -20.001 8.053 20.671 -5.795 -1.745 1.230 CBM 9PN 13 9PN CBL C13 C 0 1 Y N N -18.799 8.878 21.158 -4.812 -0.889 0.474 CBL 9PN 14 9PN CBH C14 C 0 1 Y N N -17.607 8.444 21.526 -4.101 0.154 0.964 CBH 9PN 15 9PN NBK N2 N 0 1 Y N N -18.806 10.196 21.289 -4.464 -1.015 -0.812 NBK 9PN 16 9PN NBJ N3 N 0 1 Y N N -17.721 10.539 21.698 -3.600 -0.107 -1.100 NBJ 9PN 17 9PN NBI N4 N 0 1 Y N N -16.952 9.558 21.851 -3.353 0.616 -0.064 NBI 9PN 18 9PN CAG C15 C 0 1 N N R -15.572 9.649 22.362 -2.420 1.744 -0.008 CAG 9PN 19 9PN CAK C16 C 0 1 N N R -14.839 10.948 21.985 -1.039 1.289 -0.486 CAK 9PN 20 9PN OBA O1 O 0 1 N N N -14.460 10.898 20.597 -0.540 0.278 0.391 OBA 9PN 21 9PN OAY O2 O 0 1 N N N -15.802 9.602 23.777 -2.892 2.796 -0.853 OAY 9PN 22 9PN CAI C17 C 0 1 N N R -14.589 9.645 24.548 -2.065 3.961 -0.851 CAI 9PN 23 9PN CAJ C18 C 0 1 N N N -14.886 9.368 26.031 -2.680 5.025 -1.763 CAJ 9PN 24 9PN OBB O3 O 0 1 N N N -16.186 9.843 26.356 -3.932 5.450 -1.222 OBB 9PN 25 9PN CAH C19 C 0 1 N N R -13.942 11.000 24.336 -0.669 3.595 -1.363 CAH 9PN 26 9PN OAZ O4 O 0 1 N N N -12.740 11.127 25.117 0.176 4.746 -1.308 OAZ 9PN 27 9PN CAL C20 C 0 1 N N S -13.593 11.132 22.859 -0.085 2.488 -0.481 CAL 9PN 28 9PN O1 O5 O 0 1 N N N -13.072 12.451 22.666 1.187 2.088 -0.995 O1 9PN 29 9PN C1 C21 C 0 1 N N S -11.836 12.511 21.948 2.093 1.611 0.002 C1 9PN 30 9PN C2 C22 C 0 1 N N R -11.483 13.973 21.735 3.369 1.099 -0.671 C2 9PN 31 9PN O2 O6 O 0 1 N N N -12.526 14.602 20.970 3.050 -0.004 -1.522 O2 9PN 32 9PN O5 O7 O 0 1 N N N -10.801 11.884 22.713 2.422 2.677 0.896 O5 9PN 33 9PN O6 O8 O 0 1 N N N -8.457 11.799 24.200 2.349 3.886 3.502 O6 9PN 34 9PN O4 O9 O 0 1 N N N -7.854 13.288 21.011 5.499 1.384 2.409 O4 9PN 35 9PN O3 O10 O 0 1 N N N -9.753 15.447 20.924 5.581 0.234 -0.210 O3 9PN 36 9PN CAM C23 C 0 1 N N S -9.987 16.061 19.647 5.621 -1.152 -0.553 CAM 9PN 37 9PN OBD O11 O 0 1 N N N -9.210 15.391 18.648 5.576 -1.940 0.638 OBD 9PN 38 9PN CAO C24 C 0 1 N N R -9.469 15.901 17.331 5.585 -3.350 0.406 CAO 9PN 39 9PN CAP C25 C 0 1 N N N -8.722 15.009 16.331 5.505 -4.088 1.744 CAP 9PN 40 9PN OBG O12 O 0 1 N N N -7.370 14.819 16.759 4.247 -3.815 2.365 OBG 9PN 41 9PN CAN C26 C 0 1 N N S -9.007 17.355 17.258 6.878 -3.739 -0.315 CAN 9PN 42 9PN OBE O13 O 0 1 N N N -9.356 17.904 15.977 6.863 -5.139 -0.600 OBE 9PN 43 9PN CAR C27 C 0 1 N N S -9.700 18.177 18.352 6.979 -2.951 -1.625 CAR 9PN 44 9PN OBC O14 O 0 1 N N N -9.119 19.480 18.410 8.218 -3.253 -2.270 OBC 9PN 45 9PN CAQ C28 C 0 1 N N R -9.547 17.516 19.720 6.915 -1.453 -1.314 CAQ 9PN 46 9PN OBF O15 O 0 1 N N N -10.331 18.236 20.682 6.936 -0.710 -2.534 OBF 9PN 47 9PN H1 H1 H 0 1 N N N -8.904 13.802 22.741 5.104 2.629 0.807 H1 9PN 48 9PN H2 H2 H 0 1 N N N -9.619 11.335 21.074 2.856 1.497 2.536 H2 9PN 49 9PN H3 H3 H 0 1 N N N -8.904 10.098 23.101 4.310 3.244 3.609 H3 9PN 50 9PN H4 H4 H 0 1 N N N -7.560 11.106 22.464 3.934 4.338 2.257 H4 9PN 51 9PN H5 H5 H 0 1 N N N -10.249 13.637 20.000 3.933 -0.187 0.966 H5 9PN 52 9PN H6 H6 H 0 1 N N N -23.433 6.291 17.783 -8.892 -4.278 -0.571 H6 9PN 53 9PN H7 H7 H 0 1 N N N -23.882 5.794 15.410 -11.036 -4.337 -1.781 H7 9PN 54 9PN H8 H8 H 0 1 N N N -22.413 6.722 13.654 -12.774 -2.638 -1.258 H8 9PN 55 9PN H9 H9 H 0 1 N N N -20.486 8.141 14.262 -12.280 -0.926 0.477 H9 9PN 56 9PN H10 H10 H 0 1 N N N -20.012 8.656 16.638 -10.097 -0.964 1.618 H10 9PN 57 9PN H11 H11 H 0 1 N N N -22.281 8.449 19.187 -8.272 -2.213 2.267 H11 9PN 58 9PN H12 H12 H 0 1 N N N -21.608 6.795 19.380 -7.756 -3.636 1.330 H12 9PN 59 9PN H13 H13 H 0 1 N N N -19.350 7.856 18.616 -7.002 -2.151 -0.507 H13 9PN 60 9PN H14 H14 H 0 1 N N N -20.134 9.425 19.003 -7.518 -0.729 0.430 H14 9PN 61 9PN H15 H15 H 0 1 N N N -20.911 8.353 21.211 -5.931 -1.342 2.234 H15 9PN 62 9PN H16 H16 H 0 1 N N N -19.816 6.981 20.832 -5.415 -2.764 1.296 H16 9PN 63 9PN H17 H17 H 0 1 N N N -17.248 7.426 21.556 -4.126 0.539 1.972 H17 9PN 64 9PN H18 H18 H 0 1 N N N -14.981 8.783 22.029 -2.349 2.106 1.018 H18 9PN 65 9PN H19 H19 H 0 1 N N N -15.518 11.796 22.157 -1.117 0.890 -1.497 H19 9PN 66 9PN H20 H20 H 0 1 N N N -14.007 11.700 20.363 -1.098 -0.510 0.441 H20 9PN 67 9PN H21 H21 H 0 1 N N N -13.898 8.870 24.187 -1.989 4.352 0.163 H21 9PN 68 9PN H22 H22 H 0 1 N N N -14.835 8.285 26.218 -2.006 5.878 -1.832 H22 9PN 69 9PN H23 H23 H 0 1 N N N -14.142 9.884 26.656 -2.838 4.604 -2.757 H23 9PN 70 9PN H24 H24 H 0 1 N N N -16.367 9.671 27.273 -4.380 6.125 -1.750 H24 9PN 71 9PN H25 H25 H 0 1 N N N -14.658 11.789 24.608 -0.740 3.243 -2.392 H25 9PN 72 9PN H26 H26 H 0 1 N N N -12.951 11.046 26.040 -0.136 5.489 -1.841 H26 9PN 73 9PN H27 H27 H 0 1 N N N -12.844 10.373 22.590 0.032 2.856 0.538 H27 9PN 74 9PN H28 H28 H 0 1 N N N -11.938 12.019 20.969 1.626 0.800 0.560 H28 9PN 75 9PN H29 H29 H 0 1 N N N -11.388 14.463 22.715 3.815 1.899 -1.262 H29 9PN 76 9PN H30 H30 H 0 1 N N N -13.349 14.532 21.439 2.427 0.211 -2.229 H30 9PN 77 9PN H31 H31 H 0 1 N N N -7.845 11.337 24.761 2.438 4.647 4.093 H31 9PN 78 9PN H32 H32 H 0 1 N N N -7.186 12.812 21.490 5.711 2.075 3.052 H32 9PN 79 9PN H33 H33 H 0 1 N N N -11.056 16.020 19.393 4.765 -1.396 -1.182 H33 9PN 80 9PN H34 H34 H 0 1 N N N -10.546 15.857 17.111 4.728 -3.622 -0.210 H34 9PN 81 9PN H35 H35 H 0 1 N N N -8.727 15.489 15.341 5.602 -5.160 1.574 H35 9PN 82 9PN H36 H36 H 0 1 N N N -9.225 14.033 16.268 6.312 -3.749 2.394 H36 9PN 83 9PN H37 H37 H 0 1 N N N -6.915 14.266 16.135 4.128 -4.251 3.220 H37 9PN 84 9PN H38 H38 H 0 1 N N N -7.918 17.397 17.411 7.733 -3.504 0.318 H38 9PN 85 9PN H39 H39 H 0 1 N N N -9.069 18.808 15.931 7.654 -5.456 -1.058 H39 9PN 86 9PN H40 H40 H 0 1 N N N -10.771 18.251 18.112 6.151 -3.224 -2.280 H40 9PN 87 9PN H41 H41 H 0 1 N N N -9.548 19.989 19.088 8.349 -2.788 -3.108 H41 9PN 88 9PN H42 H42 H 0 1 N N N -8.485 17.547 20.007 7.771 -1.172 -0.700 H42 9PN 89 9PN H43 H43 H 0 1 N N N -10.239 17.828 21.535 6.893 0.249 -2.412 H43 9PN 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PN CBT CBS DOUB Y N 1 9PN CBT CBO SING Y N 2 9PN CBS CBR SING Y N 3 9PN CBO CBP DOUB Y N 4 9PN OBE CAN SING N N 5 9PN CAP OBG SING N N 6 9PN CAP CAO SING N N 7 9PN CBR NBQ DOUB Y N 8 9PN CBP NBQ SING Y N 9 9PN CAN CAO SING N N 10 9PN CAN CAR SING N N 11 9PN CAO OBD SING N N 12 9PN NBQ CBN SING N N 13 9PN CAR OBC SING N N 14 9PN CAR CAQ SING N N 15 9PN OBD CAM SING N N 16 9PN CBN CBU SING N N 17 9PN CBU CBM SING N N 18 9PN CAM CAQ SING N N 19 9PN CAM O3 SING N N 20 9PN CAQ OBF SING N N 21 9PN OBA CAK SING N N 22 9PN CBM CBL SING N N 23 9PN O3 C3 SING N N 24 9PN O2 C2 SING N N 25 9PN C3 C2 SING N N 26 9PN C3 C4 SING N N 27 9PN O4 C4 SING N N 28 9PN CBL NBK SING Y N 29 9PN CBL CBH DOUB Y N 30 9PN NBK NBJ DOUB Y N 31 9PN CBH NBI SING Y N 32 9PN NBJ NBI SING Y N 33 9PN C2 C1 SING N N 34 9PN C4 C5 SING N N 35 9PN NBI CAG SING N N 36 9PN C1 O1 SING N N 37 9PN C1 O5 SING N N 38 9PN CAK CAG SING N N 39 9PN CAK CAL SING N N 40 9PN C5 O5 SING N N 41 9PN C5 C6 SING N N 42 9PN CAG OAY SING N N 43 9PN O1 CAL SING N N 44 9PN CAL CAH SING N N 45 9PN C6 O6 SING N N 46 9PN OAY CAI SING N N 47 9PN CAH CAI SING N N 48 9PN CAH OAZ SING N N 49 9PN CAI CAJ SING N N 50 9PN CAJ OBB SING N N 51 9PN C4 H1 SING N N 52 9PN C5 H2 SING N N 53 9PN C6 H3 SING N N 54 9PN C6 H4 SING N N 55 9PN C3 H5 SING N N 56 9PN CBP H6 SING N N 57 9PN CBO H7 SING N N 58 9PN CBT H8 SING N N 59 9PN CBS H9 SING N N 60 9PN CBR H10 SING N N 61 9PN CBN H11 SING N N 62 9PN CBN H12 SING N N 63 9PN CBU H13 SING N N 64 9PN CBU H14 SING N N 65 9PN CBM H15 SING N N 66 9PN CBM H16 SING N N 67 9PN CBH H17 SING N N 68 9PN CAG H18 SING N N 69 9PN CAK H19 SING N N 70 9PN OBA H20 SING N N 71 9PN CAI H21 SING N N 72 9PN CAJ H22 SING N N 73 9PN CAJ H23 SING N N 74 9PN OBB H24 SING N N 75 9PN CAH H25 SING N N 76 9PN OAZ H26 SING N N 77 9PN CAL H27 SING N N 78 9PN C1 H28 SING N N 79 9PN C2 H29 SING N N 80 9PN O2 H30 SING N N 81 9PN O6 H31 SING N N 82 9PN O4 H32 SING N N 83 9PN CAM H33 SING N N 84 9PN CAO H34 SING N N 85 9PN CAP H35 SING N N 86 9PN CAP H36 SING N N 87 9PN OBG H37 SING N N 88 9PN CAN H38 SING N N 89 9PN OBE H39 SING N N 90 9PN CAR H40 SING N N 91 9PN OBC H41 SING N N 92 9PN CAQ H42 SING N N 93 9PN OBF H43 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PN InChI InChI 1.03 ;InChI=1S/C28H43N4O15/c33-10-14-17(36)20(39)21(40)27(44-14)47-25-19(38)16(12-35)45-28(23(25)42)46-24-18(37)15(11-34)43-26(22(24)41)32-9-13(29-30-32)5-4-8-31-6-2-1-3-7-31/h1-3,6-7,9,14-28,33-42H,4-5,8,10-12H2/q+1/t14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+,25+,26-,27+,28+/m1/s1 ; 9PN InChIKey InChI 1.03 KBNJHYMTJQZFJJ-ZJLPYKFYSA-N 9PN SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(CCC[n+]5ccccc5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" 9PN SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(CCC[n+]5ccccc5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O" 9PN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc[n+](cc1)CCCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O" 9PN SMILES "OpenEye OEToolkits" 2.0.6 "c1cc[n+](cc1)CCCc2cn(nn2)C3C(C(C(C(O3)CO)O)OC4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9PN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(3-pyridin-1-ium-1-ylpropyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PN "Create component" 2017-06-20 RCSB 9PN "Initial release" 2018-05-02 RCSB #