data_9PV # _chem_comp.id 9PV _chem_comp.name "(2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-17 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XEJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PV OAO O1 O 0 1 N N N 47.594 -9.029 -17.194 5.825 0.634 0.093 OAO 9PV 1 9PV PAN P1 P 0 1 N N N 46.494 -10.061 -16.873 4.349 1.248 -0.097 PAN 9PV 2 9PV OAP O2 O 0 1 N N N 46.374 -11.061 -18.008 4.073 2.214 0.990 OAP 9PV 3 9PV OAQ O3 O 0 1 N N N 45.214 -9.461 -16.402 4.259 1.999 -1.518 OAQ 9PV 4 9PV OAM O4 O 0 1 N N N 47.029 -10.925 -15.538 3.263 0.060 -0.048 OAM 9PV 5 9PV CAL C1 C 0 1 N N N 48.211 -11.776 -15.761 1.854 0.292 -0.083 CAL 9PV 6 9PV CAA C2 C 0 1 Y N N 48.166 -12.702 -14.567 1.126 -1.026 -0.021 CAA 9PV 7 9PV CAB C3 C 0 1 Y N N 49.130 -12.565 -13.640 1.829 -2.210 0.062 CAB 9PV 8 9PV NAC N1 N 0 1 Y N N 49.229 -13.444 -12.529 1.204 -3.370 0.118 NAC 9PV 9 9PV CAD C4 C 0 1 Y N N 48.256 -14.319 -12.269 -0.110 -3.460 0.097 CAD 9PV 10 9PV CAG C5 C 0 1 N N N 48.420 -15.138 -11.016 -0.764 -4.816 0.164 CAG 9PV 11 9PV CAE C6 C 0 1 Y N N 47.247 -14.479 -13.207 -0.899 -2.322 0.016 CAE 9PV 12 9PV OAH O5 O 0 1 N N N 46.296 -15.362 -12.958 -2.253 -2.420 -0.004 OAH 9PV 13 9PV CAF C7 C 0 1 Y N N 47.154 -13.672 -14.365 -0.273 -1.066 -0.040 CAF 9PV 14 9PV CAI C8 C 0 1 N N N 46.152 -13.888 -15.361 -1.067 0.176 -0.122 CAI 9PV 15 9PV N N2 N 0 1 N N N 46.014 -15.303 -15.642 -2.359 0.117 -0.139 N 9PV 16 9PV CA C9 C 0 1 N N S 45.277 -15.929 -16.720 -3.147 1.349 -0.220 CA 9PV 17 9PV C C10 C 0 1 N N N 44.521 -17.187 -16.280 -3.997 1.321 -1.465 C 9PV 18 9PV O O6 O 0 1 N N N 44.839 -17.703 -15.234 -4.806 2.353 -1.748 O 9PV 19 9PV OXT O7 O 0 1 N N N 43.671 -17.634 -17.048 -3.949 0.369 -2.207 OXT 9PV 20 9PV CB C11 C 0 1 N N N 44.339 -15.045 -17.550 -4.049 1.460 1.010 CB 9PV 21 9PV SG S1 S 0 1 N N N 43.847 -13.776 -16.381 -3.024 1.643 2.496 SG 9PV 22 9PV H1 H1 H 0 1 N N N 47.977 -9.227 -18.041 6.532 1.294 0.074 H1 9PV 23 9PV H2 H2 H 0 1 N N N 44.493 -9.815 -16.909 4.430 1.425 -2.278 H2 9PV 24 9PV H3 H3 H 0 1 N N N 48.127 -12.336 -16.704 1.566 0.907 0.770 H3 9PV 25 9PV H4 H4 H 0 1 N N N 49.136 -11.180 -15.769 1.594 0.808 -1.007 H4 9PV 26 9PV H5 H5 H 0 1 N N N 49.848 -11.765 -13.743 2.909 -2.187 0.082 H5 9PV 27 9PV H6 H6 H 0 1 N N N 49.357 -14.857 -10.513 -0.942 -5.083 1.205 H6 9PV 28 9PV H7 H7 H 0 1 N N N 47.572 -14.950 -10.342 -1.713 -4.788 -0.371 H7 9PV 29 9PV H8 H8 H 0 1 N N N 48.451 -16.206 -11.278 -0.110 -5.558 -0.295 H8 9PV 30 9PV H9 H9 H 0 1 N N N 46.496 -15.825 -12.153 -2.662 -2.397 0.872 H9 9PV 31 9PV H10 H10 H 0 1 N N N 45.578 -13.107 -15.837 -0.569 1.133 -0.168 H10 9PV 32 9PV H14 H14 H 0 1 N N N 46.034 -16.287 -17.433 -2.476 2.208 -0.258 H14 9PV 33 9PV H15 H15 H 0 1 N N N 44.333 -18.497 -15.105 -5.332 2.289 -2.557 H15 9PV 34 9PV H16 H16 H 0 1 N N N 44.866 -14.607 -18.411 -4.698 2.329 0.908 H16 9PV 35 9PV H17 H17 H 0 1 N N N 43.468 -15.616 -17.905 -4.657 0.560 1.097 H17 9PV 36 9PV H18 H18 H 0 1 N N N 43.054 -13.038 -17.101 -3.934 1.727 3.483 H18 9PV 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PV OAP PAN DOUB N N 1 9PV CB CA SING N N 2 9PV CB SG SING N N 3 9PV OAO PAN SING N N 4 9PV OXT C DOUB N N 5 9PV PAN OAQ SING N N 6 9PV PAN OAM SING N N 7 9PV CA C SING N N 8 9PV CA N SING N N 9 9PV C O SING N N 10 9PV CAL OAM SING N N 11 9PV CAL CAA SING N N 12 9PV N CAI DOUB N N 13 9PV CAI CAF SING N N 14 9PV CAA CAF DOUB Y N 15 9PV CAA CAB SING Y N 16 9PV CAF CAE SING Y N 17 9PV CAB NAC DOUB Y N 18 9PV CAE OAH SING N N 19 9PV CAE CAD DOUB Y N 20 9PV NAC CAD SING Y N 21 9PV CAD CAG SING N N 22 9PV OAO H1 SING N N 23 9PV OAQ H2 SING N N 24 9PV CAL H3 SING N N 25 9PV CAL H4 SING N N 26 9PV CAB H5 SING N N 27 9PV CAG H6 SING N N 28 9PV CAG H7 SING N N 29 9PV CAG H8 SING N N 30 9PV OAH H9 SING N N 31 9PV CAI H10 SING N N 32 9PV CA H14 SING N N 33 9PV O H15 SING N N 34 9PV CB H16 SING N N 35 9PV CB H17 SING N N 36 9PV SG H18 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PV InChI InChI 1.03 "InChI=1S/C11H15N2O7PS/c1-6-10(14)8(3-13-9(5-22)11(15)16)7(2-12-6)4-20-21(17,18)19/h2-3,9,14,22H,4-5H2,1H3,(H,15,16)(H2,17,18,19)/b13-3+/t9-/m1/s1" 9PV InChIKey InChI 1.03 NUTWYOJHALJXFM-RZTFRGLUSA-N 9PV SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@H](CS)C(O)=O)c1O" 9PV SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](CS)C(O)=O)c1O" 9PV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@H](CS)C(=O)O)O" 9PV SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CS)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id 9PV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PV "Create component" 2022-04-17 PDBJ 9PV "Initial release" 2023-04-05 RCSB #