data_9Q6 # _chem_comp.id 9Q6 _chem_comp.name "1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N4 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-06-20 _chem_comp.pdbx_modified_date 2019-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.359 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9Q6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A4G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9Q6 CAA C1 C 0 1 N N N 28.010 -8.867 29.541 -4.447 4.859 -1.040 CAA 9Q6 1 9Q6 CAB C2 C 0 1 Y N N 28.054 -8.894 28.149 -3.799 3.577 -0.584 CAB 9Q6 2 9Q6 CAC C3 C 0 1 Y N N 29.279 -8.907 27.497 -4.329 2.359 -0.972 CAC 9Q6 3 9Q6 CAD C4 C 0 1 Y N N 29.323 -8.936 26.107 -3.731 1.186 -0.551 CAD 9Q6 4 9Q6 CAE C5 C 0 1 Y N N 28.147 -8.921 25.353 -2.588 1.226 0.251 CAE 9Q6 5 9Q6 CAF C6 C 0 1 Y N N 26.928 -8.941 26.016 -2.069 2.451 0.640 CAF 9Q6 6 9Q6 CAG C7 C 0 1 Y N N 26.880 -8.912 27.404 -2.673 3.621 0.218 CAG 9Q6 7 9Q6 CAH C8 C 0 1 N N N 25.644 -8.902 28.031 -2.108 4.951 0.643 CAH 9Q6 8 9Q6 CAJ C9 C 0 1 N N N 29.358 -8.943 23.357 -2.583 -1.152 0.444 CAJ 9Q6 9 9Q6 CAL C10 C 0 1 N N N 30.517 -8.981 21.327 -2.448 -3.457 0.264 CAL 9Q6 10 9Q6 CAO C11 C 0 1 N N N 31.700 -8.705 23.408 -4.418 -2.488 -0.534 CAO 9Q6 11 9Q6 CAQ C12 C 0 1 N N S 30.497 -8.576 24.074 -4.032 -1.163 0.043 CAQ 9Q6 12 9Q6 CAS C13 C 0 1 N N N 26.914 -9.184 23.232 -0.639 0.074 1.269 CAS 9Q6 13 9Q6 CAT C14 C 0 1 N N S 26.621 -10.654 22.902 0.439 -0.016 0.187 CAT 9Q6 14 9Q6 CAU C15 C 0 1 N N S 25.261 -10.798 22.205 1.822 0.024 0.840 CAU 9Q6 15 9Q6 CAV C16 C 0 1 N N R 24.104 -10.469 23.143 2.900 -0.066 -0.242 CAV 9Q6 16 9Q6 CAW C17 C 0 1 N N N 22.850 -11.132 22.570 4.283 -0.025 0.411 CAW 9Q6 17 9Q6 NAI N1 N 0 1 N N N 28.180 -8.987 24.005 -1.963 0.035 0.643 NAI 9Q6 18 9Q6 NAK N2 N 0 1 N N N 29.371 -9.049 22.016 -1.923 -2.270 0.590 NAK 9Q6 19 9Q6 NAN N3 N 0 1 N N N 31.720 -8.799 22.013 -3.628 -3.562 -0.371 NAN 9Q6 20 9Q6 NAR N4 N 0 1 N N N 30.507 -8.950 25.486 -4.270 -0.065 -0.900 NAR 9Q6 21 9Q6 OAM O1 O 0 1 N N N 30.514 -9.100 20.101 -1.838 -4.471 0.548 OAM 9Q6 22 9Q6 OAP O2 O 0 1 N N N 32.750 -8.495 24.014 -5.453 -2.595 -1.156 OAP 9Q6 23 9Q6 OAX O3 O 0 1 N N N 21.717 -10.734 23.326 5.288 0.007 -0.604 OAX 9Q6 24 9Q6 OAZ O4 O 0 1 N N N 22.074 -11.498 25.785 7.700 -0.049 -1.648 OAZ 9Q6 25 9Q6 OBA O5 O 0 1 N N N 19.701 -11.156 24.829 7.216 1.440 0.463 OBA 9Q6 26 9Q6 OBB O6 O 0 1 N N N 21.134 -13.161 24.067 7.219 -1.080 0.605 OBB 9Q6 27 9Q6 OBC O7 O 0 1 N N N 24.365 -10.972 24.455 2.749 -1.291 -0.963 OBC 9Q6 28 9Q6 OBD O8 O 0 1 N N N 25.186 -9.917 21.080 1.972 1.249 1.560 OBD 9Q6 29 9Q6 OBE O9 O 0 1 N N N 27.624 -11.151 22.020 0.288 -1.241 -0.534 OBE 9Q6 30 9Q6 OBF O10 O 0 1 N N N 30.387 -7.152 24.169 -4.829 -0.920 1.204 OBF 9Q6 31 9Q6 PAY P1 P 0 1 N N N 21.224 -11.623 24.571 6.864 0.055 -0.277 PAY 9Q6 32 9Q6 H1 H1 H 0 1 N N N 28.000 -9.897 29.928 -5.203 5.162 -0.315 H1 9Q6 33 9Q6 H2 H2 H 0 1 N N N 28.895 -8.340 29.926 -3.691 5.639 -1.124 H2 9Q6 34 9Q6 H3 H3 H 0 1 N N N 27.100 -8.343 29.869 -4.917 4.703 -2.011 H3 9Q6 35 9Q6 H4 H4 H 0 1 N N N 30.196 -8.895 28.067 -5.206 2.325 -1.601 H4 9Q6 36 9Q6 H5 H5 H 0 1 N N N 26.010 -8.979 25.449 -1.192 2.492 1.270 H5 9Q6 37 9Q6 H6 H6 H 0 1 N N N 25.319 -9.936 28.219 -1.369 5.283 -0.087 H6 9Q6 38 9Q6 H7 H7 H 0 1 N N N 25.722 -8.363 28.987 -2.912 5.685 0.705 H7 9Q6 39 9Q6 H8 H8 H 0 1 N N N 24.910 -8.398 27.385 -1.633 4.850 1.619 H8 9Q6 40 9Q6 H9 H9 H 0 1 N N N 26.991 -8.624 22.288 -0.536 -0.766 1.955 H9 9Q6 41 9Q6 H10 H10 H 0 1 N N N 26.078 -8.787 23.826 -0.524 1.009 1.818 H10 9Q6 42 9Q6 H11 H11 H 0 1 N N N 26.607 -11.235 23.836 0.336 0.824 -0.500 H11 9Q6 43 9Q6 H12 H12 H 0 1 N N N 25.152 -11.840 21.869 1.924 -0.816 1.526 H12 9Q6 44 9Q6 H13 H13 H 0 1 N N N 23.957 -9.379 23.169 2.797 0.774 -0.929 H13 9Q6 45 9Q6 H14 H14 H 0 1 N N N 22.718 -10.824 21.522 4.365 0.866 1.032 H14 9Q6 46 9Q6 H15 H15 H 0 1 N N N 22.958 -12.226 22.620 4.419 -0.913 1.029 H15 9Q6 47 9Q6 H16 H16 H 0 1 N N N 32.584 -8.737 21.513 -3.912 -4.424 -0.713 H16 9Q6 48 9Q6 H17 H17 H 0 1 N N N 30.877 -9.877 25.554 -4.772 -0.194 -1.720 H17 9Q6 49 9Q6 H18 H18 H 0 1 N N N 22.403 -12.355 26.032 8.659 -0.027 -1.527 H18 9Q6 50 9Q6 H19 H19 H 0 1 N N N 19.111 -11.874 24.631 7.010 2.228 -0.058 H19 9Q6 51 9Q6 H20 H20 H 0 1 N N N 23.637 -10.760 25.027 2.829 -2.083 -0.414 H20 9Q6 52 9Q6 H21 H21 H 0 1 N N N 24.341 -10.014 20.657 1.893 2.041 1.011 H21 9Q6 53 9Q6 H22 H22 H 0 1 N N N 28.476 -11.071 22.432 0.368 -2.033 0.015 H22 9Q6 54 9Q6 H23 H23 H 0 1 N N N 31.255 -6.766 24.169 -5.781 -0.911 1.033 H23 9Q6 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9Q6 OAM CAL DOUB N N 1 9Q6 OBD CAU SING N N 2 9Q6 CAL NAN SING N N 3 9Q6 CAL NAK SING N N 4 9Q6 NAN CAO SING N N 5 9Q6 NAK CAJ DOUB N N 6 9Q6 OBE CAT SING N N 7 9Q6 CAU CAT SING N N 8 9Q6 CAU CAV SING N N 9 9Q6 CAW CAV SING N N 10 9Q6 CAW OAX SING N N 11 9Q6 CAT CAS SING N N 12 9Q6 CAV OBC SING N N 13 9Q6 CAS NAI SING N N 14 9Q6 OAX PAY SING N N 15 9Q6 CAJ NAI SING N N 16 9Q6 CAJ CAQ SING N N 17 9Q6 CAO OAP DOUB N N 18 9Q6 CAO CAQ SING N N 19 9Q6 NAI CAE SING N N 20 9Q6 OBB PAY DOUB N N 21 9Q6 CAQ OBF SING N N 22 9Q6 CAQ NAR SING N N 23 9Q6 PAY OBA SING N N 24 9Q6 PAY OAZ SING N N 25 9Q6 CAE CAF SING Y N 26 9Q6 CAE CAD DOUB Y N 27 9Q6 NAR CAD SING N N 28 9Q6 CAF CAG DOUB Y N 29 9Q6 CAD CAC SING Y N 30 9Q6 CAG CAH SING N N 31 9Q6 CAG CAB SING Y N 32 9Q6 CAC CAB DOUB Y N 33 9Q6 CAB CAA SING N N 34 9Q6 CAA H1 SING N N 35 9Q6 CAA H2 SING N N 36 9Q6 CAA H3 SING N N 37 9Q6 CAC H4 SING N N 38 9Q6 CAF H5 SING N N 39 9Q6 CAH H6 SING N N 40 9Q6 CAH H7 SING N N 41 9Q6 CAH H8 SING N N 42 9Q6 CAS H9 SING N N 43 9Q6 CAS H10 SING N N 44 9Q6 CAT H11 SING N N 45 9Q6 CAU H12 SING N N 46 9Q6 CAV H13 SING N N 47 9Q6 CAW H14 SING N N 48 9Q6 CAW H15 SING N N 49 9Q6 NAN H16 SING N N 50 9Q6 NAR H17 SING N N 51 9Q6 OAZ H18 SING N N 52 9Q6 OBA H19 SING N N 53 9Q6 OBC H20 SING N N 54 9Q6 OBD H21 SING N N 55 9Q6 OBE H22 SING N N 56 9Q6 OBF H23 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9Q6 SMILES ACDLabs 12.01 "Cc1cc3c(cc1C)N(C=2C(C(=O)NC(N=2)=O)(O)N3)CC(C(C(O)COP(O)(O)=O)O)O" 9Q6 InChI InChI 1.03 "InChI=1S/C17H23N4O10P/c1-7-3-9-10(4-8(7)2)21(14-17(27,20-9)15(25)19-16(26)18-14)5-11(22)13(24)12(23)6-31-32(28,29)30/h3-4,11-13,20,22-24,27H,5-6H2,1-2H3,(H,19,25,26)(H2,28,29,30)/t11-,12+,13-,17-/m0/s1" 9Q6 InChIKey InChI 1.03 XVRDTKNEVFQDDQ-LKQDWFRTSA-N 9Q6 SMILES_CANONICAL CACTVS 3.385 "Cc1cc2N[C@@]3(O)C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C" 9Q6 SMILES CACTVS 3.385 "Cc1cc2N[C]3(O)C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C" 9Q6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)[C@@]3(N2)O)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O" 9Q6 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3(N2)O)CC(C(C(COP(=O)(O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9Q6 "SYSTEMATIC NAME" ACDLabs 12.01 "1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol" 9Q6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{S})-5-[(4~{a}~{S})-7,8-dimethyl-4~{a}-oxidanyl-2,4-bis(oxidanylidene)-5~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9Q6 "Create component" 2018-06-20 PDBJ 9Q6 "Initial release" 2019-06-19 RCSB ##