data_9QU # _chem_comp.id 9QU _chem_comp.name "N-[(1s,4s)-4-(1H-benzimidazol-2-yl)cyclohexyl]-N~2~-[(1H-indol-2-yl)methyl]glycinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-26 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.504 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9QU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SLZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9QU N1 N1 N 0 1 N N N -7.288 9.780 5.532 -2.795 0.294 -0.530 N1 9QU 1 9QU C7 C1 C 0 1 N N N -6.278 10.589 4.827 -1.395 0.324 -0.974 C7 9QU 2 9QU C8 C2 C 0 1 N N N -6.695 12.053 4.770 -0.680 1.471 -0.307 C8 9QU 3 9QU N2 N2 N 0 1 N N N -6.230 12.776 3.742 0.623 1.694 -0.566 N2 9QU 4 9QU C9 C3 C 0 1 N N N -6.461 14.220 3.591 1.318 2.809 0.082 C9 9QU 5 9QU C1 C4 C 0 1 Y N N -8.277 10.385 -0.172 -8.524 -0.120 -0.650 C1 9QU 6 9QU C5 C5 C 0 1 Y N N -8.768 10.455 2.403 -5.980 -0.230 -1.323 C5 9QU 7 9QU C6 C6 C 0 1 N N N -8.597 9.525 4.861 -3.525 -0.813 -1.161 C6 9QU 8 9QU N3 N3 N 0 1 Y N N -8.750 15.118 -1.269 4.809 -0.516 -0.662 N3 9QU 9 9QU C4 C7 C 0 1 Y N N -8.553 9.465 3.368 -4.953 -0.811 -0.682 C4 9QU 10 9QU C3 C8 C 0 1 Y N N -7.950 8.574 1.388 -6.754 -1.209 0.603 C3 9QU 11 9QU C2 C9 C 0 1 Y N N -8.362 9.901 1.139 -7.179 -0.467 -0.515 C2 9QU 12 9QU N4 N4 N 0 1 Y N N -7.135 13.572 -1.341 5.969 0.247 1.021 N4 9QU 13 9QU O O1 O 0 1 N N N -7.434 12.519 5.633 -1.278 2.193 0.462 O 9QU 14 9QU N N5 N 0 1 Y N N -8.086 8.333 2.752 -5.397 -1.401 0.471 N 9QU 15 9QU C22 C10 C 0 1 Y N N -7.482 7.746 0.368 -7.686 -1.588 1.563 C22 9QU 16 9QU C23 C11 C 0 1 Y N N -7.429 8.253 -0.927 -9.007 -1.224 1.416 C23 9QU 17 9QU C C12 C 0 1 Y N N -7.820 9.562 -1.194 -9.422 -0.498 0.309 C 9QU 18 9QU C14 C13 C 0 1 N N N -7.916 14.547 3.249 2.508 3.238 -0.779 C14 9QU 19 9QU C13 C14 C 0 1 N N N -8.271 14.203 1.797 3.472 2.061 -0.940 C13 9QU 20 9QU C12 C15 C 0 1 N N N -7.317 14.889 0.809 3.972 1.619 0.437 C12 9QU 21 9QU C11 C16 C 0 1 N N N -5.867 14.495 1.137 2.782 1.190 1.298 C11 9QU 22 9QU C10 C17 C 0 1 N N N -5.506 14.856 2.582 1.818 2.367 1.459 C10 9QU 23 9QU C15 C18 C 0 1 Y N N -7.736 14.562 -0.634 4.921 0.460 0.278 C15 9QU 24 9QU C17 C19 C 0 1 Y N N -7.824 13.459 -2.533 6.595 -0.886 0.612 C17 9QU 25 9QU C18 C20 C 0 1 Y N N -7.679 12.609 -3.626 7.734 -1.568 1.048 C18 9QU 26 9QU C19 C21 C 0 1 Y N N -8.581 12.738 -4.677 8.124 -2.715 0.417 C19 9QU 27 9QU C20 C22 C 0 1 Y N N -9.600 13.690 -4.630 7.400 -3.213 -0.657 C20 9QU 28 9QU C21 C23 C 0 1 Y N N -9.730 14.542 -3.540 6.273 -2.556 -1.105 C21 9QU 29 9QU C16 C24 C 0 1 Y N N -8.830 14.424 -2.479 5.862 -1.390 -0.476 C16 9QU 30 9QU H1 H1 H 0 1 N N N -6.874 8.889 5.718 -2.854 0.240 0.476 H1 9QU 31 9QU H3 H3 H 0 1 N N N -6.163 10.207 3.802 -0.909 -0.614 -0.704 H3 9QU 32 9QU H4 H4 H 0 1 N N N -5.318 10.509 5.358 -1.360 0.453 -2.056 H4 9QU 33 9QU H5 H5 H 0 1 N N N -5.696 12.307 3.038 1.102 1.116 -1.181 H5 9QU 34 9QU H6 H6 H 0 1 N N N -6.252 14.690 4.564 0.632 3.648 0.197 H6 9QU 35 9QU H7 H7 H 0 1 N N N -8.568 11.402 -0.390 -8.854 0.449 -1.507 H7 9QU 36 9QU H8 H8 H 0 1 N N N -9.163 11.445 2.574 -5.931 0.309 -2.257 H8 9QU 37 9QU H9 H9 H 0 1 N N N -9.288 10.332 5.148 -3.504 -0.692 -2.243 H9 9QU 38 9QU H10 H10 H 0 1 N N N -8.984 8.563 5.228 -3.053 -1.759 -0.892 H10 9QU 39 9QU H11 H11 H 0 1 N N N -9.331 15.868 -0.955 4.115 -0.588 -1.337 H11 9QU 40 9QU H13 H13 H 0 1 N N N -7.876 7.470 3.211 -4.838 -1.883 1.101 H13 9QU 41 9QU H14 H14 H 0 1 N N N -7.168 6.734 0.578 -7.373 -2.157 2.426 H14 9QU 42 9QU H15 H15 H 0 1 N N N -7.081 7.624 -1.733 -9.729 -1.520 2.163 H15 9QU 43 9QU H16 H16 H 0 1 N N N -7.768 9.941 -2.204 -10.462 -0.229 0.204 H16 9QU 44 9QU H17 H17 H 0 1 N N N -8.082 15.623 3.407 2.152 3.553 -1.760 H17 9QU 45 9QU H18 H18 H 0 1 N N N -8.573 13.972 3.918 3.025 4.068 -0.297 H18 9QU 46 9QU H19 H19 H 0 1 N N N -9.299 14.536 1.591 2.955 1.231 -1.422 H19 9QU 47 9QU H20 H20 H 0 1 N N N -8.204 13.113 1.661 4.319 2.367 -1.554 H20 9QU 48 9QU H21 H21 H 0 1 N N N -7.411 15.976 0.949 4.489 2.449 0.919 H21 9QU 49 9QU H22 H22 H 0 1 N N N -5.750 13.410 0.999 2.265 0.361 0.816 H22 9QU 50 9QU H23 H23 H 0 1 N N N -5.188 15.027 0.454 3.138 0.876 2.279 H23 9QU 51 9QU H24 H24 H 0 1 N N N -4.485 14.505 2.790 2.335 3.197 1.941 H24 9QU 52 9QU H25 H25 H 0 1 N N N -5.548 15.949 2.695 0.971 2.062 2.072 H25 9QU 53 9QU H26 H26 H 0 1 N N N -6.890 11.872 -3.657 8.305 -1.189 1.883 H26 9QU 54 9QU H27 H27 H 0 1 N N N -8.492 12.094 -5.539 9.004 -3.240 0.757 H27 9QU 55 9QU H28 H28 H 0 1 N N N -10.297 13.766 -5.452 7.722 -4.121 -1.146 H28 9QU 56 9QU H29 H29 H 0 1 N N N -10.515 15.284 -3.514 5.714 -2.948 -1.942 H29 9QU 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9QU C19 C20 DOUB Y N 1 9QU C19 C18 SING Y N 2 9QU C20 C21 SING Y N 3 9QU C18 C17 DOUB Y N 4 9QU C21 C16 DOUB Y N 5 9QU C17 C16 SING Y N 6 9QU C17 N4 SING Y N 7 9QU C16 N3 SING Y N 8 9QU N4 C15 DOUB Y N 9 9QU N3 C15 SING Y N 10 9QU C C23 DOUB Y N 11 9QU C C1 SING Y N 12 9QU C23 C22 SING Y N 13 9QU C15 C12 SING N N 14 9QU C1 C2 DOUB Y N 15 9QU C22 C3 DOUB Y N 16 9QU C12 C11 SING N N 17 9QU C12 C13 SING N N 18 9QU C11 C10 SING N N 19 9QU C2 C3 SING Y N 20 9QU C2 C5 SING Y N 21 9QU C3 N SING Y N 22 9QU C13 C14 SING N N 23 9QU C5 C4 DOUB Y N 24 9QU C10 C9 SING N N 25 9QU N C4 SING Y N 26 9QU C14 C9 SING N N 27 9QU C4 C6 SING N N 28 9QU C9 N2 SING N N 29 9QU N2 C8 SING N N 30 9QU C8 C7 SING N N 31 9QU C8 O DOUB N N 32 9QU C7 N1 SING N N 33 9QU C6 N1 SING N N 34 9QU N1 H1 SING N N 35 9QU C7 H3 SING N N 36 9QU C7 H4 SING N N 37 9QU N2 H5 SING N N 38 9QU C9 H6 SING N N 39 9QU C1 H7 SING N N 40 9QU C5 H8 SING N N 41 9QU C6 H9 SING N N 42 9QU C6 H10 SING N N 43 9QU N3 H11 SING N N 44 9QU N H13 SING N N 45 9QU C22 H14 SING N N 46 9QU C23 H15 SING N N 47 9QU C H16 SING N N 48 9QU C14 H17 SING N N 49 9QU C14 H18 SING N N 50 9QU C13 H19 SING N N 51 9QU C13 H20 SING N N 52 9QU C12 H21 SING N N 53 9QU C11 H22 SING N N 54 9QU C11 H23 SING N N 55 9QU C10 H24 SING N N 56 9QU C10 H25 SING N N 57 9QU C18 H26 SING N N 58 9QU C19 H27 SING N N 59 9QU C20 H28 SING N N 60 9QU C21 H29 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9QU SMILES ACDLabs 12.01 "O=C(CNCc1cc2ccccc2[NH]1)NC1CCC(CC1)c1nc2ccccc2[NH]1" 9QU InChI InChI 1.03 "InChI=1S/C24H27N5O/c30-23(15-25-14-19-13-17-5-1-2-6-20(17)26-19)27-18-11-9-16(10-12-18)24-28-21-7-3-4-8-22(21)29-24/h1-8,13,16,18,25-26H,9-12,14-15H2,(H,27,30)(H,28,29)/t16-,18+" 9QU InChIKey InChI 1.03 HLHNFJNSQZZUNW-MAEOIBBWSA-N 9QU SMILES_CANONICAL CACTVS 3.385 "O=C(CNCc1[nH]c2ccccc2c1)N[C@@H]3CC[C@@H](CC3)c4[nH]c5ccccc5n4" 9QU SMILES CACTVS 3.385 "O=C(CNCc1[nH]c2ccccc2c1)N[CH]3CC[CH](CC3)c4[nH]c5ccccc5n4" 9QU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc([nH]2)CNCC(=O)NC3CCC(CC3)c4[nH]c5ccccc5n4" 9QU SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc([nH]2)CNCC(=O)NC3CCC(CC3)c4[nH]c5ccccc5n4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9QU "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1s,4s)-4-(1H-benzimidazol-2-yl)cyclohexyl]-N~2~-[(1H-indol-2-yl)methyl]glycinamide" 9QU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-(1~{H}-benzimidazol-2-yl)cyclohexyl]-2-(1~{H}-indol-2-ylmethylamino)ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9QU "Create component" 2021-10-26 RCSB 9QU "Initial release" 2022-01-19 RCSB ##