data_9RN # _chem_comp.id 9RN _chem_comp.name 3,6-anhydro-alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-03 _chem_comp.pdbx_modified_date 2024-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 162.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OCQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9RN C2 C1 C 0 1 N N R N N N 38.719 21.212 63.849 -0.891 -0.789 -0.704 C2 9RN 1 9RN C4 C2 C 0 1 N N S N N N 38.743 21.960 61.504 1.204 -0.582 0.595 C4 9RN 2 9RN C5 C3 C 0 1 N N R N N N 37.770 20.862 61.168 0.784 0.892 0.865 C5 9RN 3 9RN C6 C4 C 0 1 N N N N N N 38.567 19.585 61.153 1.033 1.546 -0.516 C6 9RN 4 9RN O4 O1 O 0 1 N N N N N N 39.658 22.226 60.451 2.624 -0.735 0.623 O4 9RN 5 9RN O5 O2 O 0 1 N N N N N N 36.870 20.863 62.330 -0.650 0.868 1.060 O5 9RN 6 9RN O3 O3 O 0 1 N N N N N N 39.689 19.918 62.030 0.971 0.501 -1.495 O3 9RN 7 9RN C3 C5 C 0 1 N N S N N N 39.540 21.263 62.555 0.644 -0.743 -0.846 C3 9RN 8 9RN O2 O4 O 0 1 N N N N N N 38.500 22.475 64.539 -1.259 -1.852 0.178 O2 9RN 9 9RN C1 C6 C 0 1 N N S N N N 37.436 20.458 63.592 -1.374 0.545 -0.129 C1 9RN 10 9RN O1 O5 O 0 1 N Y N N N N 36.491 20.699 64.652 -2.766 0.451 0.176 O1 9RN 11 9RN H2 H1 H 0 1 N N N N N N 39.300 20.582 64.538 -1.344 -0.952 -1.682 H2 9RN 12 9RN H4 H2 H 0 1 N N N N N N 38.239 22.859 61.887 0.719 -1.268 1.289 H4 9RN 13 9RN H5 H3 H 0 1 N N N N N N 37.246 21.041 60.218 1.326 1.357 1.689 H5 9RN 14 9RN H61 H4 H 0 1 N N N N N N 37.982 18.744 61.554 0.264 2.291 -0.718 H61 9RN 15 9RN H62 H5 H 0 1 N N N N N N 38.912 19.341 60.137 2.018 2.012 -0.533 H62 9RN 16 9RN HO4 H6 H 0 1 N Y N N N N 40.248 22.924 60.712 3.012 -0.641 1.503 HO4 9RN 17 9RN H3 H7 H 0 1 N N N N N N 40.510 21.755 62.722 1.045 -1.617 -1.359 H3 9RN 18 9RN HO2 H8 H 0 1 N Y N N N N 37.983 22.323 65.321 -2.212 -1.936 0.317 HO2 9RN 19 9RN H1 H9 H 0 1 N N N N N N 37.670 19.384 63.554 -1.222 1.331 -0.868 H1 9RN 20 9RN HO1 H10 H 0 1 N Y N N N N 36.869 20.430 65.481 -3.147 1.266 0.531 HO1 9RN 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9RN O4 C4 SING N N 1 9RN C6 C5 SING N N 2 9RN C6 O3 SING N N 3 9RN C5 C4 SING N N 4 9RN C5 O5 SING N N 5 9RN C4 C3 SING N N 6 9RN O3 C3 SING N N 7 9RN O5 C1 SING N N 8 9RN C3 C2 SING N N 9 9RN C1 C2 SING N N 10 9RN C1 O1 SING N N 11 9RN C2 O2 SING N N 12 9RN C2 H2 SING N N 13 9RN C4 H4 SING N N 14 9RN C5 H5 SING N N 15 9RN C6 H61 SING N N 16 9RN C6 H62 SING N N 17 9RN O4 HO4 SING N N 18 9RN C3 H3 SING N N 19 9RN O2 HO2 SING N N 20 9RN C1 H1 SING N N 21 9RN O1 HO1 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9RN SMILES ACDLabs 12.01 "OC1OC2COC(C2O)C1O" 9RN InChI InChI 1.06 "InChI=1S/C6H10O5/c7-3-2-1-10-5(3)4(8)6(9)11-2/h2-9H,1H2/t2-,3+,4-,5+,6+/m1/s1" 9RN InChIKey InChI 1.06 DCQFFOLNJVGHLW-RDQKPOQOSA-N 9RN SMILES_CANONICAL CACTVS 3.385 "O[C@H]1O[C@@H]2CO[C@H]([C@H]1O)[C@H]2O" 9RN SMILES CACTVS 3.385 "O[CH]1O[CH]2CO[CH]([CH]1O)[CH]2O" 9RN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]2[C@@H]([C@H](O1)[C@H]([C@H](O2)O)O)O" 9RN SMILES "OpenEye OEToolkits" 2.0.7 "C1C2C(C(O1)C(C(O2)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9RN "SYSTEMATIC NAME" ACDLabs 12.01 3,6-anhydro-alpha-D-galactopyranose 9RN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},3~{S},4~{R},5~{S},8~{S})-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9RN "Create component" 2017-07-03 EBI 9RN "Initial release" 2017-10-18 RCSB 9RN "Other modification" 2024-02-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9RN _pdbx_chem_comp_synonyms.name 3,6-anhydro-D-galactose _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #