data_9RX # _chem_comp.id 9RX _chem_comp.name "2-[3-[2-(1H-benzimidazol-2-ylamino)-2-oxidanylidene-ethyl]sulfanyl-1H-1,2,4-triazol-5-yl]benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H14 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-05 _chem_comp.pdbx_modified_date 2020-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 394.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9RX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9RX C10 C1 C 0 1 Y N N -36.071 9.024 5.880 1.828 -0.497 0.022 C10 9RX 1 9RX C15 C2 C 0 1 N N N -36.925 11.271 7.514 -0.923 -1.012 -0.003 C15 9RX 2 9RX C17 C3 C 0 1 Y N N -39.379 10.292 12.992 -6.353 0.680 0.032 C17 9RX 3 9RX C20 C4 C 0 1 Y N N -38.523 10.663 11.043 -4.666 -0.753 -0.007 C20 9RX 4 9RX C22 C5 C 0 1 Y N N -41.736 10.174 12.500 -8.222 -0.856 -0.035 C22 9RX 5 9RX C24 C6 C 0 1 Y N N -40.973 9.883 14.768 -8.597 1.513 0.044 C24 9RX 6 9RX C26 C7 C 0 1 N N N -34.482 4.851 4.681 4.992 1.868 -0.163 C26 9RX 7 9RX C01 C8 C 0 1 Y N N -33.872 3.489 8.163 8.167 -0.124 0.054 C01 9RX 8 9RX C02 C9 C 0 1 Y N N -33.991 3.569 6.788 7.301 0.946 -0.045 C02 9RX 9 9RX C03 C10 C 0 1 Y N N -34.358 4.765 6.194 5.923 0.728 -0.058 C03 9RX 10 9RX C04 C11 C 0 1 Y N N -34.595 5.882 6.977 5.427 -0.587 0.030 C04 9RX 11 9RX C05 C12 C 0 1 Y N N -34.483 5.800 8.356 6.318 -1.653 0.128 C05 9RX 12 9RX C06 C13 C 0 1 Y N N -34.118 4.602 8.950 7.679 -1.417 0.140 C06 9RX 13 9RX C07 C14 C 0 1 Y N N -35.001 7.201 6.322 3.970 -0.835 0.018 C07 9RX 14 9RX C14 C15 C 0 1 N N N -37.967 10.983 8.595 -2.320 -0.446 0.010 C14 9RX 15 9RX C18 C16 C 0 1 Y N N -40.408 10.351 12.076 -6.843 -0.636 -0.017 C18 9RX 16 9RX C23 C17 C 0 1 Y N N -42.012 9.941 13.843 -9.086 0.216 -0.004 C23 9RX 17 9RX C25 C18 C 0 1 Y N N -39.659 10.059 14.350 -7.237 1.747 0.062 C25 9RX 18 9RX N08 N1 N 0 1 Y N N -34.413 7.808 5.313 3.369 -2.045 -0.025 N08 9RX 19 9RX N09 N2 N 0 1 Y N N -35.068 8.937 5.037 1.986 -1.801 -0.024 N09 9RX 20 9RX N11 N3 N 0 1 Y N N -36.042 7.954 6.697 3.026 0.086 0.043 N11 9RX 21 9RX N13 N4 N 0 1 N N N -37.553 10.919 9.988 -3.383 -1.273 -0.019 N13 9RX 22 9RX N19 N5 N 0 1 Y N N -38.230 10.491 12.322 -4.972 0.576 0.033 N19 9RX 23 9RX N21 N6 N 0 1 Y N N -39.835 10.583 10.881 -5.765 -1.463 -0.038 N21 9RX 24 9RX O16 O1 O 0 1 N N N -39.104 10.815 8.300 -2.487 0.755 0.047 O16 9RX 25 9RX O27 O2 O 0 1 N N N -35.375 4.203 4.074 5.041 2.863 0.744 O27 9RX 26 9RX O28 O3 O 0 1 N N N -33.683 5.578 4.036 4.181 1.909 -1.066 O28 9RX 27 9RX S12 S1 S 0 1 N N N -37.299 10.352 5.985 0.280 0.345 0.043 S12 9RX 28 9RX H151 H1 H 0 0 N N N -35.933 10.970 7.881 -0.783 -1.652 0.868 H151 9RX 29 9RX H152 H2 H 0 0 N N N -36.923 12.349 7.294 -0.777 -1.597 -0.911 H152 9RX 30 9RX H221 H3 H 0 0 N N N -42.542 10.219 11.783 -8.610 -1.863 -0.072 H221 9RX 31 9RX H241 H4 H 0 0 N N N -41.188 9.701 15.811 -9.285 2.345 0.067 H241 9RX 32 9RX H011 H5 H 0 0 N N N -33.586 2.556 8.625 9.233 0.048 0.059 H011 9RX 33 9RX H021 H6 H 0 0 N N N -33.798 2.699 6.177 7.689 1.952 -0.111 H021 9RX 34 9RX H051 H7 H 0 0 N N N -34.680 6.669 8.967 5.945 -2.664 0.197 H051 9RX 35 9RX H061 H8 H 0 0 N N N -34.026 4.537 10.024 8.366 -2.246 0.212 H061 9RX 36 9RX H231 H9 H 0 0 N N N -43.033 9.805 14.169 -10.152 0.046 -0.019 H231 9RX 37 9RX H251 H10 H 0 0 N N N -38.853 10.017 15.068 -6.863 2.760 0.099 H251 9RX 38 9RX H1 H11 H 0 1 N N N -33.603 7.475 4.830 3.806 -2.911 -0.052 H1 9RX 39 9RX H131 H12 H 0 0 N N N -36.590 11.052 10.224 -3.249 -2.234 -0.049 H131 9RX 40 9RX H2 H13 H 0 1 N N N -37.313 10.506 12.721 -4.340 1.312 0.061 H2 9RX 41 9RX H4 H15 H 0 1 N N N -35.310 4.371 3.141 4.411 3.589 0.634 H4 9RX 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9RX O28 C26 DOUB N N 1 9RX O27 C26 SING N N 2 9RX C26 C03 SING N N 3 9RX N09 N08 SING Y N 4 9RX N09 C10 DOUB Y N 5 9RX N08 C07 SING Y N 6 9RX C10 S12 SING N N 7 9RX C10 N11 SING Y N 8 9RX S12 C15 SING N N 9 9RX C03 C02 DOUB Y N 10 9RX C03 C04 SING Y N 11 9RX C07 N11 DOUB Y N 12 9RX C07 C04 SING N N 13 9RX C02 C01 SING Y N 14 9RX C04 C05 DOUB Y N 15 9RX C15 C14 SING N N 16 9RX C01 C06 DOUB Y N 17 9RX O16 C14 DOUB N N 18 9RX C05 C06 SING Y N 19 9RX C14 N13 SING N N 20 9RX N13 C20 SING N N 21 9RX N21 C20 DOUB Y N 22 9RX N21 C18 SING Y N 23 9RX C20 N19 SING Y N 24 9RX C18 C22 DOUB Y N 25 9RX C18 C17 SING Y N 26 9RX N19 C17 SING Y N 27 9RX C22 C23 SING Y N 28 9RX C17 C25 DOUB Y N 29 9RX C23 C24 DOUB Y N 30 9RX C25 C24 SING Y N 31 9RX C15 H151 SING N N 32 9RX C15 H152 SING N N 33 9RX C22 H221 SING N N 34 9RX C24 H241 SING N N 35 9RX C01 H011 SING N N 36 9RX C02 H021 SING N N 37 9RX C05 H051 SING N N 38 9RX C06 H061 SING N N 39 9RX C23 H231 SING N N 40 9RX C25 H251 SING N N 41 9RX N08 H1 SING N N 42 9RX N13 H131 SING N N 43 9RX N19 H2 SING N N 44 9RX O27 H4 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9RX InChI InChI 1.03 "InChI=1S/C18H14N6O3S/c25-14(21-17-19-12-7-3-4-8-13(12)20-17)9-28-18-22-15(23-24-18)10-5-1-2-6-11(10)16(26)27/h1-8H,9H2,(H,26,27)(H,22,23,24)(H2,19,20,21,25)" 9RX InChIKey InChI 1.03 MWUOXWJZZXSQFY-UHFFFAOYSA-N 9RX SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1ccccc1c2[nH]nc(SCC(=O)Nc3[nH]c4ccccc4n3)n2" 9RX SMILES CACTVS 3.385 "OC(=O)c1ccccc1c2[nH]nc(SCC(=O)Nc3[nH]c4ccccc4n3)n2" 9RX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)c2[nH]nc(n2)SCC(=O)Nc3[nH]c4ccccc4n3)C(=O)O" 9RX SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)c2[nH]nc(n2)SCC(=O)Nc3[nH]c4ccccc4n3)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 9RX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "2-[3-[2-(1~{H}-benzimidazol-2-ylamino)-2-oxidanylidene-ethyl]sulfanyl-1~{H}-1,2,4-triazol-5-yl]benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9RX "Create component" 2018-07-05 PDBJ 9RX "Initial release" 2020-09-09 RCSB ##