data_9SE
#
_chem_comp.id 9SE
_chem_comp.name "(2~{R},4~{R})-2-methyl-1,3-selenazolidine-2,4-dicarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H9 N O4 Se"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-12-17
_chem_comp.pdbx_modified_date 2016-04-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 238.100
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9SE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FES
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SE C2 C1 C 0 1 N N R 44.863 5.666 12.044 -0.896 0.480 0.528 C2 9SE 1
9SE C5 C2 C 0 1 N N N 46.586 5.492 14.219 1.167 -1.222 -0.533 C5 9SE 2
9SE O O1 O 0 1 N N N 45.339 3.965 10.408 -1.503 2.222 -0.938 O2A2 9SE 3
9SE C2A C3 C 0 1 N N N 44.529 4.643 11.010 -1.886 1.294 -0.265 C2A 9SE 4
9SE OXT O2 O 0 1 N N N 43.332 4.396 10.646 -3.192 0.988 -0.225 O2A1 9SE 5
9SE N3 N1 N 0 1 N N N 46.267 6.140 11.793 0.484 0.996 0.334 N3 9SE 6
9SE C2B C4 C 0 1 N N N 43.881 6.878 12.029 -1.271 0.472 2.011 C2B 9SE 7
9SE SE1 SE1 SE 0 0 N N N 44.847 4.709 13.792 -0.783 -1.370 -0.178 SE1 9SE 8
9SE C4 C5 C 0 1 N N R 46.788 6.574 13.155 1.520 -0.044 0.427 C4 9SE 9
9SE C4A C6 C 0 1 N N N 48.177 6.991 13.095 2.853 0.539 0.037 C4A 9SE 10
9SE O41 O3 O 0 1 N N N 48.520 7.876 13.882 3.952 -0.231 0.047 O4A1 9SE 11
9SE O42 O4 O 0 1 N N N 48.979 6.548 12.342 2.933 1.701 -0.286 O4A2 9SE 12
9SE H1 H1 H 0 1 N N N 47.380 4.733 14.158 1.693 -2.135 -0.251 H1 9SE 13
9SE H2 H2 H 0 1 N N N 46.577 5.934 15.226 1.363 -0.960 -1.572 H2 9SE 14
9SE H3 H3 H 0 1 N N N 43.337 3.725 9.973 -3.788 1.538 -0.750 H3 9SE 15
9SE H4 H4 H 0 1 N N N 46.827 5.399 11.423 0.561 1.506 -0.533 H4 9SE 16
9SE H6 H6 H 0 1 N N N 44.174 7.597 12.808 -0.527 -0.096 2.571 H6 9SE 17
9SE H7 H7 H 0 1 N N N 43.919 7.368 11.045 -1.302 1.495 2.384 H7 9SE 18
9SE H8 H8 H 0 1 N N N 42.858 6.523 12.223 -2.250 0.010 2.136 H8 9SE 19
9SE H9 H9 H 0 1 N N N 46.189 7.443 13.466 1.572 -0.414 1.451 H9 9SE 20
9SE H10 H10 H 0 1 N N N 49.439 8.078 13.751 4.785 0.188 -0.211 H10 9SE 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SE O C2A DOUB N N 1
9SE OXT C2A SING N N 2
9SE C2A C2 SING N N 3
9SE N3 C2 SING N N 4
9SE N3 C4 SING N N 5
9SE C2B C2 SING N N 6
9SE C2 SE1 SING N N 7
9SE O42 C4A DOUB N N 8
9SE C4A C4 SING N N 9
9SE C4A O41 SING N N 10
9SE C4 C5 SING N N 11
9SE SE1 C5 SING N N 12
9SE C5 H1 SING N N 13
9SE C5 H2 SING N N 14
9SE OXT H3 SING N N 15
9SE N3 H4 SING N N 16
9SE C2B H6 SING N N 17
9SE C2B H7 SING N N 18
9SE C2B H8 SING N N 19
9SE C4 H9 SING N N 20
9SE O41 H10 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SE InChI InChI 1.03 "InChI=1S/C6H9NO4Se/c1-6(5(10)11)7-3(2-12-6)4(8)9/h3,7H,2H2,1H3,(H,8,9)(H,10,11)/t3-,6+/m0/s1"
9SE InChIKey InChI 1.03 YQSKWMPEENRPTH-BBIVZNJYSA-N
9SE SMILES_CANONICAL CACTVS 3.385 "C[C@]1(N[C@@H](C[Se]1)C(O)=O)C(O)=O"
9SE SMILES CACTVS 3.385 "C[C]1(N[CH](C[Se]1)C(O)=O)C(O)=O"
9SE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@]1(N[C@@H](C[Se]1)C(=O)O)C(=O)O"
9SE SMILES "OpenEye OEToolkits" 2.0.4 "CC1(NC(C[Se]1)C(=O)O)C(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},4~{R})-2-methyl-1,3-selenazolidine-2,4-dicarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SE "Create component" 2015-12-17 EBI
9SE "Initial release" 2016-04-06 RCSB
#