data_9SL # _chem_comp.id 9SL _chem_comp.name "[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Saxitoxin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9SL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A91 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9SL C10 C1 C 0 1 N N S N N N 178.231 176.331 190.593 1.309 -0.336 -0.052 C10 9SL 1 9SL C20 C2 C 0 1 N N N N N N 177.937 176.213 192.861 0.123 -1.194 -1.943 C20 9SL 2 9SL O01 O1 O 0 1 N N N N N N 182.257 176.667 189.419 -3.932 -1.257 0.340 O01 9SL 3 9SL C02 C3 C 0 1 N N N N N N 182.072 177.457 190.266 -4.039 -0.048 0.400 C02 9SL 4 9SL O03 O2 O 0 1 N N N N N N 181.502 178.683 189.944 -2.945 0.716 0.584 O03 9SL 5 9SL C04 C4 C 0 1 N N N N N N 180.521 178.670 188.936 -1.672 0.027 0.701 C04 9SL 6 9SL C05 C5 C 0 1 N N R N N N 179.090 178.582 189.468 -0.554 1.052 0.904 C05 9SL 7 9SL N06 N1 N 0 1 N N N N N N 179.056 179.136 190.785 -0.444 1.881 -0.301 N06 9SL 8 9SL C07 C6 C 0 1 N N N N N N 178.723 178.438 191.878 0.033 1.318 -1.399 C07 9SL 9 9SL N08 N2 N 0 1 N N N N N N 178.763 179.087 193.164 0.103 1.959 -2.614 N08 9SL 10 9SL N09 N3 N 0 1 N N N N N N 178.324 177.141 191.774 0.454 0.019 -1.195 N09 9SL 11 9SL N11 N4 N 0 1 N N N N N N 176.894 175.902 190.389 2.643 0.245 -0.203 N11 9SL 12 9SL C12 C7 C 0 1 N N N N N N 176.467 176.291 188.998 2.844 1.124 0.729 C12 9SL 13 9SL N13 N5 N 0 1 N N N N N N 177.615 176.992 188.357 1.796 1.269 1.599 N13 9SL 14 9SL C14 C8 C 0 1 N N S N N N 178.686 177.035 189.297 0.744 0.314 1.215 C14 9SL 15 9SL N15 N6 N 0 1 N N N N N N 175.174 176.038 188.395 4.009 1.846 0.836 N15 9SL 16 9SL C16 C9 C 0 1 N N N N N N 179.067 175.128 191.002 1.358 -1.862 0.023 C16 9SL 17 9SL O17 O3 O 0 1 N N N N N N 178.709 173.990 190.285 2.635 -2.309 0.484 O17 9SL 18 9SL O18 O4 O 0 1 N N N N N N 180.424 175.389 190.838 0.310 -2.365 0.853 O18 9SL 19 9SL C19 C10 C 0 1 N N N N N N 178.739 174.960 192.492 1.133 -2.269 -1.463 C19 9SL 20 9SL N21 N7 N 0 1 N N N N N N 182.441 177.147 191.628 -5.251 0.529 0.284 N21 9SL 21 9SL H1 H1 H 0 1 N N N N N N 178.232 176.603 193.846 -0.896 -1.507 -1.720 H1 9SL 22 9SL H2 H2 H 0 1 N N N N N N 176.855 176.014 192.854 0.238 -1.019 -3.013 H2 9SL 23 9SL H3 H3 H 0 1 N N N N N N 180.703 177.802 188.286 -1.703 -0.651 1.554 H3 9SL 24 9SL H4 H4 H 0 1 N N N N N N 180.616 179.595 188.348 -1.482 -0.542 -0.209 H4 9SL 25 9SL H5 H5 H 0 1 N N N N N N 178.438 179.168 188.804 -0.809 1.690 1.750 H5 9SL 26 9SL H6 H6 H 0 1 N N N N N N 179.037 180.046 193.232 -0.208 2.873 -2.698 H6 9SL 27 9SL H7 H7 H 0 1 N N N N N N 178.517 178.578 193.989 0.463 1.496 -3.386 H7 9SL 28 9SL H9 H9 H 0 1 N N N N N N 179.561 176.502 188.898 0.586 -0.421 2.004 H9 9SL 29 9SL H10 H10 H 0 1 N N N N N N 174.465 175.562 188.915 4.725 1.709 0.196 H10 9SL 30 9SL H11 H11 H 0 1 N N N N N N 174.991 176.339 187.459 4.115 2.493 1.551 H11 9SL 31 9SL H12 H12 H 0 1 N N N N N N 179.247 173.258 190.562 2.716 -3.270 0.549 H12 9SL 32 9SL H13 H13 H 0 1 N N N N N N 180.548 175.973 190.099 0.299 -3.329 0.932 H13 9SL 33 9SL H14 H14 H 0 1 N N N N N N 178.138 174.053 192.657 0.700 -3.267 -1.531 H14 9SL 34 9SL H15 H15 H 0 1 N N N N N N 179.662 174.902 193.088 2.063 -2.210 -2.028 H15 9SL 35 9SL H16 H16 H 0 1 N N N N N N 182.852 176.262 191.845 -6.039 -0.021 0.152 H16 9SL 36 9SL H17 H17 H 0 1 N N N N N N 182.285 177.818 192.353 -5.336 1.494 0.333 H17 9SL 37 9SL H8 H8 H 0 1 N N N N N N 177.631 177.367 187.430 1.754 1.894 2.341 H8 9SL 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9SL N13 C12 SING N N 1 9SL N13 C14 SING N N 2 9SL N15 C12 SING N N 3 9SL C04 C05 SING N N 4 9SL C04 O03 SING N N 5 9SL C12 N11 DOUB N N 6 9SL C14 C05 SING N N 7 9SL C14 C10 SING N N 8 9SL O01 C02 DOUB N N 9 9SL C05 N06 SING N N 10 9SL O03 C02 SING N N 11 9SL C02 N21 SING N N 12 9SL O17 C16 SING N N 13 9SL N11 C10 SING N N 14 9SL C10 C16 SING N N 15 9SL C10 N09 SING N N 16 9SL N06 C07 DOUB N N 17 9SL O18 C16 SING N N 18 9SL C16 C19 SING N N 19 9SL N09 C07 SING N N 20 9SL N09 C20 SING N N 21 9SL C07 N08 SING N N 22 9SL C19 C20 SING N N 23 9SL C20 H1 SING N N 24 9SL C20 H2 SING N N 25 9SL C04 H3 SING N N 26 9SL C04 H4 SING N N 27 9SL C05 H5 SING N N 28 9SL N08 H6 SING N N 29 9SL N08 H7 SING N N 30 9SL C14 H9 SING N N 31 9SL N15 H10 SING N N 32 9SL N15 H11 SING N N 33 9SL O17 H12 SING N N 34 9SL O18 H13 SING N N 35 9SL C19 H14 SING N N 36 9SL C19 H15 SING N N 37 9SL N21 H16 SING N N 38 9SL N21 H17 SING N N 39 9SL N13 H8 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9SL SMILES ACDLabs 12.01 "C132C(CCN1C(=NC(COC(=O)N)C2NC(=N3)N)N)(O)O" 9SL InChI InChI 1.03 "InChI=1S/C10H17N7O4/c11-6-15-5-4(3-21-8(13)18)14-7(12)17-2-1-9(19,20)10(5,17)16-6/h4-5,19-20H,1-3H2,(H2,12,14)(H2,13,18)(H3,11,15,16)/t4-,5-,10-/m0/s1" 9SL InChIKey InChI 1.03 RPQXVSUAYFXFJA-HGRQIUPRSA-N 9SL SMILES_CANONICAL CACTVS 3.385 "NC(=O)OC[C@@H]1N=C(N)N2CCC(O)(O)[C@@]23N=C(N)N[C@@H]13" 9SL SMILES CACTVS 3.385 "NC(=O)OC[CH]1N=C(N)N2CCC(O)(O)[C]23N=C(N)N[CH]13" 9SL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CN2C(=N[C@H]([C@H]3[C@]2(C1(O)O)N=C(N3)N)COC(=O)N)N" 9SL SMILES "OpenEye OEToolkits" 2.0.6 "C1CN2C(=NC(C3C2(C1(O)O)N=C(N3)N)COC(=O)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9SL "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" 9SL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(3~{a}~{S},4~{R},10~{a}~{S})-2,6-bis(azanyl)-10,10-bis(oxidanyl)-3~{a},4,8,9-tetrahydro-3~{H}-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9SL "Create component" 2018-07-18 RCSB 9SL "Initial release" 2018-08-08 RCSB 9SL "Modify synonyms" 2021-03-01 PDBE 9SL "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9SL _pdbx_chem_comp_synonyms.name Saxitoxin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 9SL ASP None "Covalent chemical modification" "Amino-acid side chain" "Any position" N15 OD2 ? ? 2 9SL GLU None "Covalent chemical modification" "Amino-acid side chain" "Any position" N08 OE2 ? ? #