data_9SR # _chem_comp.id 9SR _chem_comp.name "(1R,5R,6R,7R,9S,11S,12S,13S,14S)-3-amino-14-(hydroxymethyl)-8,10-dioxa-2,4-diazatetracyclo[7.3.1.1~7,11~.0~1,6~]tetradec-3-ene-5,9,12,13,14-pentol (non-preferred name)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Tetrodotoxin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-18 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9SR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A95 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9SR N12 N1 N 0 1 N N N 177.777 178.794 189.741 2.010 -0.635 1.244 N12 9SR 1 9SR C13 C1 C 0 1 N N N 176.880 178.456 188.675 3.102 0.019 0.718 C13 9SR 2 9SR C15 C2 C 0 1 N N R 177.423 175.930 189.003 1.707 1.397 -0.720 C15 9SR 3 9SR C17 C3 C 0 1 N N R 177.826 176.365 190.384 0.556 1.022 0.224 C17 9SR 4 9SR C21 C4 C 0 1 N N N 179.908 174.868 193.356 -3.274 1.055 -0.205 C21 9SR 5 9SR C02 C5 C 0 1 N N S 179.452 177.177 192.625 -1.761 -0.670 0.801 C02 9SR 6 9SR C03 C6 C 0 1 N N S 178.917 175.834 192.488 -1.916 0.817 0.459 C03 9SR 7 9SR C05 C7 C 0 1 N N R 178.842 175.432 191.086 -0.783 1.215 -0.493 C05 9SR 8 9SR C07 C8 C 0 1 N N S 180.727 176.884 190.590 -0.725 -1.040 -1.338 C07 9SR 9 9SR C09 C9 C 0 1 N N S 179.977 177.891 189.852 0.641 -1.298 -0.686 C09 9SR 10 9SR C11 C10 C 0 1 N N R 178.469 177.804 190.412 0.711 -0.461 0.594 C11 9SR 11 9SR C19 C11 C 0 1 N N S 178.524 178.183 191.919 -0.426 -0.873 1.528 C19 9SR 12 9SR N14 N2 N 0 1 N N N 176.689 177.029 188.304 2.983 0.952 -0.169 N14 9SR 13 9SR N18 N3 N 0 1 N N N 176.212 179.496 187.951 4.359 -0.331 1.150 N18 9SR 14 9SR O01 O1 O 0 1 N N N 180.698 177.309 191.990 -1.751 -1.417 -0.419 O01 9SR 15 9SR O04 O2 O 0 1 N N N 177.641 175.815 193.038 -1.820 1.599 1.652 O04 9SR 16 9SR O06 O3 O 0 1 N N N 180.075 175.602 190.412 -0.842 0.354 -1.634 O06 9SR 17 9SR O08 O4 O 0 1 N N N 182.039 176.818 190.166 -0.841 -1.816 -2.532 O08 9SR 18 9SR O10 O5 O 0 1 N N N 180.083 177.695 188.492 1.686 -0.907 -1.579 O10 9SR 19 9SR O16 O6 O 0 1 N N N 176.626 174.803 189.000 1.741 2.816 -0.883 O16 9SR 20 9SR O20 O7 O 0 1 N N N 179.048 179.408 192.005 -0.278 -2.249 1.883 O20 9SR 21 9SR O22 O8 O 0 1 N N N 179.752 173.555 192.938 -4.317 0.664 0.690 O22 9SR 22 9SR H1 H1 H 0 1 N N N 178.343 175.726 188.435 1.546 0.926 -1.690 H1 9SR 23 9SR H2 H2 H 0 1 N N N 176.921 176.400 191.009 0.597 1.638 1.123 H2 9SR 24 9SR H3 H3 H 0 1 N N N 180.952 175.180 193.203 -3.380 2.113 -0.447 H3 9SR 25 9SR H4 H4 H 0 1 N N N 179.654 174.946 194.424 -3.339 0.465 -1.120 H4 9SR 26 9SR H5 H5 H 0 1 N N N 179.526 177.447 193.689 -2.584 -0.993 1.439 H5 9SR 27 9SR H6 H6 H 0 1 N N N 178.490 174.393 191.006 -0.893 2.257 -0.793 H6 9SR 28 9SR H7 H7 H 0 1 N N N 180.362 178.886 190.119 0.739 -2.356 -0.441 H7 9SR 29 9SR H8 H8 H 0 1 N N N 177.514 178.120 192.350 -0.400 -0.259 2.427 H8 9SR 30 9SR H10 H10 H 0 1 N N N 175.609 179.266 187.187 4.466 -1.028 1.816 H10 9SR 31 9SR H11 H11 H 0 1 N N N 176.348 180.452 188.210 5.139 0.120 0.790 H11 9SR 32 9SR H12 H12 H 0 1 N N N 177.685 176.076 193.950 -2.492 1.389 2.315 H12 9SR 33 9SR H13 H13 H 0 1 N N N 182.500 176.154 190.665 -1.685 -1.709 -2.991 H13 9SR 34 9SR H14 H14 H 0 1 N N N 180.995 177.760 188.232 1.697 -1.401 -2.410 H14 9SR 35 9SR H15 H15 H 0 1 N N N 177.078 174.094 189.441 2.445 3.128 -1.469 H15 9SR 36 9SR H16 H16 H 0 1 N N N 179.095 179.669 192.917 -0.968 -2.578 2.476 H16 9SR 37 9SR H17 H17 H 0 1 N N N 180.328 172.991 193.442 -5.207 0.787 0.333 H17 9SR 38 9SR H18 H18 H 0 1 N N N 177.903 179.752 190.000 2.102 -1.202 2.026 H18 9SR 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9SR N18 C13 SING N N 1 9SR N14 C13 DOUB N N 2 9SR N14 C15 SING N N 3 9SR O10 C09 SING N N 4 9SR C13 N12 SING N N 5 9SR O16 C15 SING N N 6 9SR C15 C17 SING N N 7 9SR N12 C11 SING N N 8 9SR C09 C11 SING N N 9 9SR C09 C07 SING N N 10 9SR O08 C07 SING N N 11 9SR C17 C11 SING N N 12 9SR C17 C05 SING N N 13 9SR C11 C19 SING N N 14 9SR O06 C07 SING N N 15 9SR O06 C05 SING N N 16 9SR C07 O01 SING N N 17 9SR C05 C03 SING N N 18 9SR C19 O20 SING N N 19 9SR C19 C02 SING N N 20 9SR O01 C02 SING N N 21 9SR C03 C02 SING N N 22 9SR C03 O04 SING N N 23 9SR C03 C21 SING N N 24 9SR O22 C21 SING N N 25 9SR C15 H1 SING N N 26 9SR C17 H2 SING N N 27 9SR C21 H3 SING N N 28 9SR C21 H4 SING N N 29 9SR C02 H5 SING N N 30 9SR C05 H6 SING N N 31 9SR C09 H7 SING N N 32 9SR C19 H8 SING N N 33 9SR N18 H10 SING N N 34 9SR N18 H11 SING N N 35 9SR O04 H12 SING N N 36 9SR O08 H13 SING N N 37 9SR O10 H14 SING N N 38 9SR O16 H15 SING N N 39 9SR O20 H16 SING N N 40 9SR O22 H17 SING N N 41 9SR N12 H18 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9SR SMILES ACDLabs 12.01 "N1C32C(C(N=C1N)O)C4C(CO)(C(C2O)OC(C3O)(O4)O)O" 9SR InChI InChI 1.03 "InChI=1S/C11H17N3O8/c12-8-13-6(17)2-4-9(19,1-15)5-3(16)10(2,14-8)7(18)11(20,21-4)22-5/h2-7,15-20H,1H2,(H3,12,13,14)/t2-,3-,4-,5+,6-,7+,9+,10-,11+/m1/s1" 9SR InChIKey InChI 1.03 CFMYXEVWODSLAX-QOZOJKKESA-N 9SR SMILES_CANONICAL CACTVS 3.385 "NC1=N[C@H](O)[C@H]2[C@H]3O[C@]4(O)O[C@@H]([C@@H](O)[C@@]2(N1)[C@@H]4O)[C@]3(O)CO" 9SR SMILES CACTVS 3.385 "NC1=N[CH](O)[CH]2[CH]3O[C]4(O)O[CH]([CH](O)[C]2(N1)[CH]4O)[C]3(O)CO" 9SR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@@]1([C@H]2[C@@H]3[C@H](N=C(N[C@@]34[C@@H]([C@@H]1O[C@]([C@H]4O)(O2)O)O)N)O)O)O" 9SR SMILES "OpenEye OEToolkits" 2.0.6 "C(C1(C2C3C(N=C(NC34C(C1OC(C4O)(O2)O)O)N)O)O)O" # _pdbx_chem_comp_identifier.comp_id 9SR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1R,5R,6R,7R,9S,11S,12S,13S,14S)-3-amino-14-(hydroxymethyl)-8,10-dioxa-2,4-diazatetracyclo[7.3.1.1~7,11~.0~1,6~]tetradec-3-ene-5,9,12,13,14-pentol (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9SR "Other modification" 2018-07-18 PDBJ 9SR "Initial release" 2018-08-08 RCSB 9SR "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9SR _pdbx_chem_comp_synonyms.name Tetrodotoxin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##