data_9TJ # _chem_comp.id 9TJ _chem_comp.name "3-{1-[(2R)-2-borono-2-{[(thiophen-2-yl)acetyl]amino}ethyl]-1H-1,2,3-triazol-4-yl}benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H17 B N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "boronic acid transition state inhibitor S03043" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9TJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W14 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9TJ C2 C1 C 0 1 N N R N N N 39.828 -11.450 -9.763 -1.566 -1.003 0.479 C2 9TJ 1 9TJ C6 C2 C 0 1 N N N N N N 40.992 -11.782 -8.830 -0.588 -0.760 1.630 C6 9TJ 2 9TJ C8 C3 C 0 1 Y N N N N N 42.481 -9.833 -8.025 1.679 0.253 1.278 C8 9TJ 3 9TJ B1 B1 B 0 1 N N N N N N 38.334 -11.484 -9.114 -1.247 -2.384 -0.196 B1 9TJ 4 9TJ O3 O1 O 0 1 N N N N N N 37.981 -10.150 -8.470 -1.313 -3.579 0.567 O3 9TJ 5 9TJ O4 O2 O 0 1 N N N N N N 38.165 -12.506 -8.010 -0.893 -2.437 -1.571 O4 9TJ 6 9TJ N5 N1 N 0 1 N N N N N N 40.091 -10.166 -10.401 -2.936 -1.017 0.997 N5 9TJ 7 9TJ N7 N2 N 0 1 Y N N N N N 41.435 -10.665 -8.010 0.782 -0.745 1.112 N7 9TJ 8 9TJ C9 C4 C 0 1 Y N N N N N 42.342 -9.019 -6.914 2.815 -0.150 0.637 C9 9TJ 9 9TJ N10 N3 N 0 1 Y N N N N N 41.261 -9.400 -6.236 2.544 -1.363 0.122 N10 9TJ 10 9TJ N11 N4 N 0 1 Y N N N N N 40.657 -10.457 -6.904 1.335 -1.680 0.423 N11 9TJ 11 9TJ C13 C5 C 0 1 Y N N N N N 43.241 -7.919 -6.470 4.092 0.600 0.530 C13 9TJ 12 9TJ C14 C6 C 0 1 Y N N N N N 43.892 -7.100 -7.417 5.128 0.102 -0.252 C14 9TJ 13 9TJ C15 C7 C 0 1 Y N N N N N 44.756 -6.049 -7.013 6.324 0.811 -0.349 C15 9TJ 14 9TJ C16 C8 C 0 1 Y N N N N N 44.930 -5.858 -5.637 6.474 2.017 0.341 C16 9TJ 15 9TJ C17 C9 C 0 1 Y N N N N N 44.274 -6.675 -4.677 5.441 2.504 1.115 C17 9TJ 16 9TJ C18 C10 C 0 1 Y N N N N N 43.410 -7.704 -5.083 4.252 1.806 1.209 C18 9TJ 17 9TJ C19 C11 C 0 1 N N N N N N 45.480 -5.173 -8.049 7.431 0.290 -1.177 C19 9TJ 18 9TJ O20 O3 O 0 1 N N N N N N 45.625 -5.612 -9.221 7.299 -0.759 -1.776 O20 9TJ 19 9TJ O21 O4 O 0 1 N N N N N N 45.917 -4.007 -7.798 8.585 0.977 -1.269 O21 9TJ 20 9TJ C22 C12 C 0 1 N N N N N N 40.926 -9.970 -11.430 -3.909 -0.345 0.349 C22 9TJ 21 9TJ O23 O5 O 0 1 N N N N N N 41.695 -10.807 -11.871 -3.650 0.271 -0.663 O23 9TJ 22 9TJ C24 C13 C 0 1 N N N N N N 40.861 -8.626 -12.113 -5.318 -0.360 0.882 C24 9TJ 23 9TJ C25 C14 C 0 1 Y N N N N N 42.219 -8.038 -12.371 -6.205 0.460 -0.020 C25 9TJ 24 9TJ C26 C15 C 0 1 Y N N N N N 43.047 -7.979 -13.489 -6.877 -0.009 -1.072 C26 9TJ 25 9TJ C27 C16 C 0 1 Y N N N N N 44.238 -7.286 -13.246 -7.629 0.933 -1.752 C27 9TJ 26 9TJ C28 C17 C 0 1 Y N N N N N 44.303 -6.806 -11.933 -7.567 2.168 -1.252 C28 9TJ 27 9TJ S29 S1 S 0 1 Y N N N N N 42.891 -7.213 -11.009 -6.517 2.182 0.159 S29 9TJ 28 9TJ H1 H1 H 0 1 N N N N N N 39.826 -12.217 -10.551 -1.465 -0.206 -0.258 H1 9TJ 29 9TJ H2 H2 H 0 1 N N N N N N 40.677 -12.597 -8.162 -0.809 0.199 2.099 H2 9TJ 30 9TJ H3 H3 H 0 1 N N N N N N 41.841 -12.118 -9.443 -0.689 -1.556 2.367 H3 9TJ 31 9TJ H4 H4 H 0 1 N N N N N N 43.275 -9.802 -8.757 1.526 1.182 1.806 H4 9TJ 32 9TJ H5 H5 H 0 1 N N N N N N 37.107 -10.198 -8.101 -1.100 -4.378 0.066 H5 9TJ 33 9TJ H6 H6 H 0 1 N N N N N N 37.275 -12.471 -7.679 -0.715 -3.330 -1.896 H6 9TJ 34 9TJ H7 H7 H 0 1 N N N N N N 39.609 -9.367 -10.041 -3.144 -1.510 1.806 H7 9TJ 35 9TJ H8 H8 H 0 1 N N N N N N 43.730 -7.276 -8.470 5.007 -0.831 -0.783 H8 9TJ 36 9TJ H9 H9 H 0 1 N N N N N N 45.581 -5.067 -5.295 7.400 2.569 0.268 H9 9TJ 37 9TJ H10 H10 H 0 1 N N N N N N 44.442 -6.502 -3.624 5.560 3.437 1.647 H10 9TJ 38 9TJ H11 H11 H 0 1 N N N N N N 42.890 -8.313 -4.358 3.445 2.195 1.814 H11 9TJ 39 9TJ H12 H12 H 0 1 N N N N N N 46.304 -3.638 -8.583 9.280 0.596 -1.823 H12 9TJ 40 9TJ H13 H13 H 0 1 N N N N N N 40.294 -7.934 -11.473 -5.684 -1.387 0.914 H13 9TJ 41 9TJ H14 H14 H 0 1 N N N N N N 40.341 -8.745 -13.075 -5.331 0.062 1.886 H14 9TJ 42 9TJ H15 H15 H 0 1 N N N N N N 42.797 -8.421 -14.442 -6.838 -1.047 -1.370 H15 9TJ 43 9TJ H16 H16 H 0 1 N N N N N N 45.014 -7.139 -13.983 -8.220 0.687 -2.621 H16 9TJ 44 9TJ H17 H17 H 0 1 N N N N N N 45.138 -6.245 -11.539 -8.085 3.028 -1.651 H17 9TJ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9TJ C26 C27 SING Y N 1 9TJ C26 C25 DOUB Y N 2 9TJ C27 C28 DOUB Y N 3 9TJ C25 C24 SING N N 4 9TJ C25 S29 SING Y N 5 9TJ C24 C22 SING N N 6 9TJ C28 S29 SING Y N 7 9TJ O23 C22 DOUB N N 8 9TJ C22 N5 SING N N 9 9TJ N5 C2 SING N N 10 9TJ C2 B1 SING N N 11 9TJ C2 C6 SING N N 12 9TJ O20 C19 DOUB N N 13 9TJ B1 O3 SING N N 14 9TJ B1 O4 SING N N 15 9TJ C6 N7 SING N N 16 9TJ C19 O21 SING N N 17 9TJ C19 C15 SING N N 18 9TJ C8 N7 SING Y N 19 9TJ C8 C9 DOUB Y N 20 9TJ N7 N11 SING Y N 21 9TJ C14 C15 DOUB Y N 22 9TJ C14 C13 SING Y N 23 9TJ C15 C16 SING Y N 24 9TJ C9 C13 SING N N 25 9TJ C9 N10 SING Y N 26 9TJ N11 N10 DOUB Y N 27 9TJ C13 C18 DOUB Y N 28 9TJ C16 C17 DOUB Y N 29 9TJ C18 C17 SING Y N 30 9TJ C2 H1 SING N N 31 9TJ C6 H2 SING N N 32 9TJ C6 H3 SING N N 33 9TJ C8 H4 SING N N 34 9TJ O3 H5 SING N N 35 9TJ O4 H6 SING N N 36 9TJ N5 H7 SING N N 37 9TJ C14 H8 SING N N 38 9TJ C16 H9 SING N N 39 9TJ C17 H10 SING N N 40 9TJ C18 H11 SING N N 41 9TJ O21 H12 SING N N 42 9TJ C24 H13 SING N N 43 9TJ C24 H14 SING N N 44 9TJ C26 H15 SING N N 45 9TJ C27 H16 SING N N 46 9TJ C28 H17 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9TJ SMILES ACDLabs 12.01 "C(B(O)O)(Cn2cc(c1cccc(c1)C(O)=O)nn2)NC(=O)Cc3sccc3" 9TJ InChI InChI 1.03 "InChI=1S/C17H17BN4O5S/c23-16(8-13-5-2-6-28-13)19-15(18(26)27)10-22-9-14(20-21-22)11-3-1-4-12(7-11)17(24)25/h1-7,9,15,26-27H,8,10H2,(H,19,23)(H,24,25)/t15-/m0/s1" 9TJ InChIKey InChI 1.03 WHXOLIBPKXZPTN-HNNXBMFYSA-N 9TJ SMILES_CANONICAL CACTVS 3.385 "OB(O)[C@H](Cn1cc(nn1)c2cccc(c2)C(O)=O)NC(=O)Cc3sccc3" 9TJ SMILES CACTVS 3.385 "OB(O)[CH](Cn1cc(nn1)c2cccc(c2)C(O)=O)NC(=O)Cc3sccc3" 9TJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "B([C@H](Cn1cc(nn1)c2cccc(c2)C(=O)O)NC(=O)Cc3cccs3)(O)O" 9TJ SMILES "OpenEye OEToolkits" 2.0.6 "B(C(Cn1cc(nn1)c2cccc(c2)C(=O)O)NC(=O)Cc3cccs3)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9TJ "SYSTEMATIC NAME" ACDLabs 12.01 "3-{1-[(2R)-2-borono-2-{[(thiophen-2-yl)acetyl]amino}ethyl]-1H-1,2,3-triazol-4-yl}benzoic acid" 9TJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[1-[(2~{R})-2-(dihydroxyboranyl)-2-(2-thiophen-2-ylethanoylamino)ethyl]-1,2,3-triazol-4-yl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9TJ "Create component" 2017-06-07 RCSB 9TJ "Initial release" 2017-11-29 RCSB 9TJ "Modify synonyms" 2020-06-05 PDBE 9TJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9TJ _pdbx_chem_comp_synonyms.name "boronic acid transition state inhibitor S03043" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 9TJ _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #