data_9TP # _chem_comp.id 9TP _chem_comp.name ;(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-(thiophen-2-ylmethylidene)-beta-D-glucopyranoside ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H32 O13 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Teniposide _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-07-01 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 656.654 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9TP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4L9Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9TP C1 C1 C 0 1 Y N N -12.612 -7.870 13.044 -1.061 -3.449 -0.159 C1 9TP 1 9TP C2 C2 C 0 1 Y N N -12.267 -6.608 12.504 -2.357 -3.615 -0.643 C2 9TP 2 9TP C3 C3 C 0 1 Y N N -12.257 -6.384 11.022 -3.111 -2.503 -0.972 C3 9TP 3 9TP C4 C4 C 0 1 Y N N -12.595 -7.501 10.171 -2.587 -1.227 -0.825 C4 9TP 4 9TP C5 C5 C 0 1 Y N N -12.968 -8.794 10.750 -1.309 -1.061 -0.336 C5 9TP 5 9TP C6 C6 C 0 1 Y N N -12.974 -8.996 12.179 -0.546 -2.174 -0.009 C6 9TP 6 9TP C7 C7 C 0 1 N N R -12.609 -7.230 8.561 -3.467 -0.062 -1.237 C7 9TP 7 9TP C8 C8 C 0 1 N N R -12.996 -8.392 7.776 -2.577 1.151 -1.419 C8 9TP 8 9TP C9 C9 C 0 1 N N R -12.514 -9.735 8.476 -1.801 1.326 -0.075 C9 9TP 9 9TP C10 C10 C 0 1 N N S -13.359 -9.937 9.787 -0.682 0.301 -0.112 C10 9TP 10 9TP O11 O11 O 0 1 N N N -12.540 -7.769 14.465 -0.528 -4.680 0.092 O11 9TP 11 9TP C12 C12 C 0 1 N N N -12.537 -6.346 14.762 -1.651 -5.580 0.148 C12 9TP 12 9TP O13 O13 O 0 1 N N N -11.976 -5.732 13.612 -2.635 -4.950 -0.695 O13 9TP 13 9TP C14 C14 C 0 1 N N N -12.799 -8.496 6.527 -3.266 2.477 -1.548 C14 9TP 14 9TP O15 O15 O 0 1 N N N -12.649 -10.078 6.317 -2.522 3.407 -0.905 O15 9TP 15 9TP C16 C16 C 0 1 N N N -12.556 -10.677 7.602 -1.356 2.786 -0.259 C16 9TP 16 9TP C17 C17 C 0 1 Y N N -11.359 -6.612 7.901 -4.488 0.212 -0.162 C17 9TP 17 9TP C18 C18 C 0 1 Y N N -11.620 -5.502 7.133 -5.738 0.691 -0.504 C18 9TP 18 9TP C19 C19 C 0 1 Y N N -10.605 -4.831 6.422 -6.680 0.944 0.482 C19 9TP 19 9TP C20 C20 C 0 1 Y N N -9.254 -5.330 6.500 -6.364 0.715 1.816 C20 9TP 20 9TP C21 C21 C 0 1 Y N N -8.988 -6.444 7.247 -5.106 0.233 2.156 C21 9TP 21 9TP C22 C22 C 0 1 Y N N -10.030 -7.123 7.964 -4.172 -0.023 1.163 C22 9TP 22 9TP O23 O23 O 0 1 N N N -12.766 -7.655 5.631 -4.306 2.681 -2.127 O23 9TP 23 9TP O24 O24 O 0 1 N N N -7.588 -6.928 7.298 -4.792 0.007 3.460 O24 9TP 24 9TP C25 C25 C 0 1 N N N -7.018 -7.324 6.049 -3.481 -0.489 3.736 C25 9TP 25 9TP O26 O26 O 0 1 N N N -8.181 -4.681 5.791 -7.285 0.963 2.787 O26 9TP 26 9TP O27 O27 O 0 1 N N N -10.999 -3.660 5.656 -7.909 1.416 0.145 O27 9TP 27 9TP C28 C28 C 0 1 N N N -12.400 -3.536 5.459 -8.163 1.629 -1.245 C28 9TP 28 9TP O29 O29 O 0 1 N N N -14.721 -9.764 9.487 0.216 0.603 -1.181 O29 9TP 29 9TP C30 C30 C 0 1 N N R -15.410 -10.903 9.549 1.558 0.167 -0.954 C30 9TP 30 9TP O31 O31 O 0 1 N N N -15.159 -11.770 8.329 2.111 0.889 0.152 O31 9TP 31 9TP C32 C32 C 0 1 N N R -15.703 -13.099 8.613 3.449 0.508 0.463 C32 9TP 32 9TP C33 C33 C 0 1 N N S -17.182 -13.151 8.682 4.350 0.829 -0.737 C33 9TP 33 9TP C34 C34 C 0 1 N N R -17.690 -12.088 9.709 3.854 0.035 -1.946 C34 9TP 34 9TP C35 C35 C 0 1 N N R -16.944 -10.719 9.599 2.393 0.417 -2.212 C35 9TP 35 9TP C36 C36 C 0 1 N N N -15.090 -14.134 7.779 3.974 1.271 1.679 C36 9TP 36 9TP O37 O37 O 0 1 N N N -15.319 -15.342 8.529 5.350 0.919 1.872 O37 9TP 37 9TP C38 C38 C 0 1 N N R -16.775 -15.597 8.458 6.187 1.175 0.744 C38 9TP 38 9TP O39 O39 O 0 1 N N N -17.682 -14.524 8.979 5.692 0.477 -0.404 O39 9TP 39 9TP C40 C40 C 0 1 Y N N -18.097 -16.166 8.993 7.588 0.709 1.046 C40 9TP 40 9TP S1 S41 S 0 1 Y N N -19.663 -15.736 8.657 8.469 -0.513 0.138 S41 9TP 41 9TP C42 C42 C 0 1 Y N N -20.506 -16.859 9.508 9.864 -0.335 1.194 C42 9TP 42 9TP C43 C43 C 0 1 Y N N -19.576 -17.778 10.163 9.607 0.586 2.124 C43 9TP 43 9TP C44 C44 C 0 1 Y N N -18.115 -17.372 9.829 8.353 1.166 2.039 C44 9TP 44 9TP O45 O45 O 0 1 N N N -19.090 -11.912 9.625 4.650 0.355 -3.089 O45 9TP 45 9TP O46 O46 O 0 1 N N N -17.261 -9.838 10.659 1.882 -0.375 -3.286 O46 9TP 46 9TP H1 H1 H 0 1 N N N -12.006 -5.420 10.605 -4.115 -2.630 -1.348 H1 9TP 47 9TP H2 H2 H 0 1 N N N -13.239 -9.954 12.601 0.459 -2.044 0.364 H2 9TP 48 9TP H3 H3 H 0 1 N N N -13.407 -6.486 8.418 -3.972 -0.293 -2.175 H3 9TP 49 9TP H4 H4 H 0 1 N N N -14.087 -8.438 7.906 -1.882 0.990 -2.243 H4 9TP 50 9TP H5 H5 H 0 1 N N N -11.477 -9.560 8.798 -2.444 1.194 0.795 H5 9TP 51 9TP H6 H6 H 0 1 N N N -13.140 -10.917 10.236 -0.144 0.309 0.836 H6 9TP 52 9TP H7 H7 H 0 1 N N N -13.562 -5.984 14.932 -1.378 -6.558 -0.250 H7 9TP 53 9TP H8 H8 H 0 1 N N N -11.922 -6.138 15.650 -2.019 -5.671 1.170 H8 9TP 54 9TP H9 H9 H 0 1 N N N -11.642 -11.286 7.665 -1.156 3.252 0.706 H9 9TP 55 9TP H10 H10 H 0 1 N N N -13.434 -11.314 7.782 -0.481 2.844 -0.905 H10 9TP 56 9TP H11 H11 H 0 1 N N N -12.633 -5.133 7.073 -5.982 0.869 -1.541 H11 9TP 57 9TP H12 H12 H 0 1 N N N -9.810 -8.008 8.543 -3.195 -0.402 1.426 H12 9TP 58 9TP H13 H13 H 0 1 N N N -5.984 -7.663 6.208 -3.340 -1.445 3.231 H13 9TP 59 9TP H14 H14 H 0 1 N N N -7.610 -8.145 5.620 -2.740 0.225 3.375 H14 9TP 60 9TP H15 H15 H 0 1 N N N -7.021 -6.469 5.357 -3.362 -0.624 4.811 H15 9TP 61 9TP H16 H16 H 0 1 N N N -7.367 -5.142 5.956 -7.850 0.206 2.996 H16 9TP 62 9TP H17 H17 H 0 1 N N N -12.610 -2.629 4.874 -7.453 2.356 -1.638 H17 9TP 63 9TP H18 H18 H 0 1 N N N -12.773 -4.417 4.916 -8.054 0.687 -1.783 H18 9TP 64 9TP H19 H19 H 0 1 N N N -12.903 -3.467 6.435 -9.178 2.006 -1.376 H19 9TP 65 9TP H20 H20 H 0 1 N N N -15.117 -11.480 10.438 1.559 -0.899 -0.727 H20 9TP 66 9TP H21 H21 H 0 1 N N N -15.369 -13.327 9.636 3.483 -0.563 0.665 H21 9TP 67 9TP H22 H22 H 0 1 N N N -17.576 -12.857 7.698 4.297 1.896 -0.956 H22 9TP 68 9TP H23 H23 H 0 1 N N N -17.456 -12.487 10.707 3.922 -1.032 -1.736 H23 9TP 69 9TP H24 H24 H 0 1 N N N -17.250 -10.259 8.648 2.337 1.472 -2.481 H24 9TP 70 9TP H25 H25 H 0 1 N N N -15.575 -14.184 6.793 3.890 2.343 1.505 H25 9TP 71 9TP H26 H26 H 0 1 N N N -14.014 -13.949 7.649 3.397 0.995 2.562 H26 9TP 72 9TP H27 H27 H 0 1 N N N -16.967 -15.558 7.376 6.200 2.245 0.538 H27 9TP 73 9TP H28 H28 H 0 1 N N N -21.583 -16.911 9.574 10.788 -0.888 1.103 H28 9TP 74 9TP H29 H29 H 0 1 N N N -19.862 -18.613 10.785 10.324 0.861 2.883 H29 9TP 75 9TP H30 H30 H 0 1 N N N -17.236 -17.902 10.165 8.018 1.928 2.727 H30 9TP 76 9TP H31 H31 H 0 1 N N N -19.367 -11.262 10.260 4.389 -0.115 -3.893 H31 9TP 77 9TP H32 H32 H 0 1 N N N -18.202 -9.717 10.700 0.961 -0.185 -3.512 H32 9TP 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9TP C1 C2 DOUB Y N 1 9TP C1 C6 SING Y N 2 9TP C1 O11 SING N N 3 9TP C2 C3 SING Y N 4 9TP C2 O13 SING N N 5 9TP C3 C4 DOUB Y N 6 9TP C4 C5 SING Y N 7 9TP C4 C7 SING N N 8 9TP C5 C6 DOUB Y N 9 9TP C5 C10 SING N N 10 9TP C7 C8 SING N N 11 9TP C7 C17 SING N N 12 9TP C8 C9 SING N N 13 9TP C8 C14 SING N N 14 9TP C9 C10 SING N N 15 9TP C9 C16 SING N N 16 9TP C10 O29 SING N N 17 9TP O11 C12 SING N N 18 9TP C12 O13 SING N N 19 9TP C14 O15 SING N N 20 9TP C14 O23 DOUB N N 21 9TP O15 C16 SING N N 22 9TP C17 C18 DOUB Y N 23 9TP C17 C22 SING Y N 24 9TP C18 C19 SING Y N 25 9TP C19 C20 DOUB Y N 26 9TP C19 O27 SING N N 27 9TP C20 C21 SING Y N 28 9TP C20 O26 SING N N 29 9TP C21 C22 DOUB Y N 30 9TP C21 O24 SING N N 31 9TP O24 C25 SING N N 32 9TP O27 C28 SING N N 33 9TP O29 C30 SING N N 34 9TP C30 O31 SING N N 35 9TP C30 C35 SING N N 36 9TP O31 C32 SING N N 37 9TP C32 C33 SING N N 38 9TP C32 C36 SING N N 39 9TP C33 C34 SING N N 40 9TP C33 O39 SING N N 41 9TP C34 C35 SING N N 42 9TP C34 O45 SING N N 43 9TP C35 O46 SING N N 44 9TP C36 O37 SING N N 45 9TP O37 C38 SING N N 46 9TP C38 O39 SING N N 47 9TP C38 C40 SING N N 48 9TP C40 S1 SING Y N 49 9TP C40 C44 DOUB Y N 50 9TP S1 C42 SING Y N 51 9TP C42 C43 DOUB Y N 52 9TP C43 C44 SING Y N 53 9TP C3 H1 SING N N 54 9TP C6 H2 SING N N 55 9TP C7 H3 SING N N 56 9TP C8 H4 SING N N 57 9TP C9 H5 SING N N 58 9TP C10 H6 SING N N 59 9TP C12 H7 SING N N 60 9TP C12 H8 SING N N 61 9TP C16 H9 SING N N 62 9TP C16 H10 SING N N 63 9TP C18 H11 SING N N 64 9TP C22 H12 SING N N 65 9TP C25 H13 SING N N 66 9TP C25 H14 SING N N 67 9TP C25 H15 SING N N 68 9TP O26 H16 SING N N 69 9TP C28 H17 SING N N 70 9TP C28 H18 SING N N 71 9TP C28 H19 SING N N 72 9TP C30 H20 SING N N 73 9TP C32 H21 SING N N 74 9TP C33 H22 SING N N 75 9TP C34 H23 SING N N 76 9TP C35 H24 SING N N 77 9TP C36 H25 SING N N 78 9TP C36 H26 SING N N 79 9TP C38 H27 SING N N 80 9TP C42 H28 SING N N 81 9TP C43 H29 SING N N 82 9TP C44 H30 SING N N 83 9TP O45 H31 SING N N 84 9TP O46 H32 SING N N 85 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9TP SMILES ACDLabs 12.01 "O=C1OCC8C1C(c2cc(OC)c(O)c(OC)c2)c4cc3OCOc3cc4C8OC6OC5COC(OC5C(O)C6O)c7sccc7" 9TP InChI InChI 1.03 "InChI=1S/C32H32O13S/c1-37-19-6-13(7-20(38-2)25(19)33)23-14-8-17-18(42-12-41-17)9-15(14)28(16-10-39-30(36)24(16)23)44-32-27(35)26(34)29-21(43-32)11-40-31(45-29)22-4-3-5-46-22/h3-9,16,21,23-24,26-29,31-35H,10-12H2,1-2H3/t16-,21+,23+,24-,26+,27+,28+,29+,31+,32-/m0/s1" 9TP InChIKey InChI 1.03 NRUKOCRGYNPUPR-QBPJDGROSA-N 9TP SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1O)[C@H]2[C@@H]3[C@H](COC3=O)[C@H](O[C@@H]4O[C@@H]5CO[C@H](O[C@H]5[C@H](O)[C@H]4O)c6sccc6)c7cc8OCOc8cc27" 9TP SMILES CACTVS 3.385 "COc1cc(cc(OC)c1O)[CH]2[CH]3[CH](COC3=O)[CH](O[CH]4O[CH]5CO[CH](O[CH]5[CH](O)[CH]4O)c6sccc6)c7cc8OCOc8cc27" 9TP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1O)OC)[C@@H]2c3cc4c(cc3[C@H]([C@@H]5[C@@H]2C(=O)OC5)O[C@H]6[C@@H]([C@H]([C@H]7[C@H](O6)CO[C@H](O7)c8cccs8)O)O)OCO4" 9TP SMILES "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1O)OC)C2c3cc4c(cc3C(C5C2C(=O)OC5)OC6C(C(C7C(O6)COC(O7)c8cccs8)O)O)OCO4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9TP "SYSTEMATIC NAME" ACDLabs 12.01 "(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl 4,6-O-(thiophen-2-ylmethylidene)-beta-D-glucopyranoside" 9TP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5S,5aR,8aR,9R)-5-[[(2R,4aR,6R,7R,8R,8aS)-7,8-bis(oxidanyl)-2-thiophen-2-yl-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxin-6-yl]oxy]-9-(3,5-dimethoxy-4-oxidanyl-phenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[6,5-f][1,3]benzodioxol-8-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9TP "Create component" 2013-07-01 RCSB 9TP "Initial release" 2013-07-24 RCSB 9TP "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9TP _pdbx_chem_comp_synonyms.name Teniposide _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##