data_9U0 # _chem_comp.id 9U0 _chem_comp.name "N6-({[(1S,2E)-cyclooct-2-en-1-yl]oxy}carbonyl)-L-lysine" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C15 H26 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-31 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9U0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AAO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9U0 C15 C1 C 0 1 N N N 263.535 34.516 138.425 4.303 0.666 -0.171 C15 9U0 1 9U0 C17 C2 C 0 1 N N N 263.600 36.685 136.996 6.272 2.053 0.125 C17 9U0 2 9U0 C20 C3 C 0 1 N N N 262.590 37.043 140.094 6.143 -1.268 -0.027 C20 9U0 3 9U0 C21 C4 C 0 1 N N N 263.414 35.762 140.462 4.735 -1.592 -0.571 C21 9U0 4 9U0 OXT O1 O 0 1 N Y N 257.328 34.834 147.258 -7.576 1.291 -1.297 OXT 9U0 5 9U0 C C5 C 0 1 N N N 257.159 35.732 146.255 -7.299 0.319 -0.414 C 9U0 6 9U0 O O2 O 0 1 N N N 257.513 37.047 146.422 -8.043 -0.627 -0.303 O 9U0 7 9U0 CA C6 C 0 1 N N S 256.611 35.173 144.961 -6.060 0.408 0.439 CA 9U0 8 9U0 N N1 N 0 1 N N N 256.104 36.223 144.074 -6.210 -0.464 1.612 N 9U0 9 9U0 CB C7 C 0 1 N N N 257.765 34.455 144.278 -4.846 -0.040 -0.377 CB 9U0 10 9U0 CG C8 C 0 1 N N N 257.471 34.108 142.823 -3.573 0.167 0.447 CG 9U0 11 9U0 CD C9 C 0 1 N N N 258.513 33.093 142.320 -2.359 -0.280 -0.370 CD 9U0 12 9U0 CE C10 C 0 1 N N N 259.940 33.666 142.137 -1.086 -0.073 0.454 CE 9U0 13 9U0 NZ N2 N 0 1 N N N 260.935 32.590 141.827 0.076 -0.502 -0.328 NZ 9U0 14 9U0 C11 C11 C 0 1 N N N 262.371 32.927 141.577 1.314 -0.411 0.199 C11 9U0 15 9U0 O12 O3 O 0 1 N N N 263.114 32.986 142.467 1.465 0.027 1.322 O12 9U0 16 9U0 O13 O4 O 0 1 N N N 263.122 33.220 140.371 2.382 -0.804 -0.519 O13 9U0 17 9U0 C14 C12 C 0 1 N N S 262.872 34.503 139.747 3.684 -0.678 0.112 C14 9U0 18 9U0 C16 C13 C 0 1 N N N 262.997 35.358 137.347 5.130 1.203 0.619 C16 9U0 19 9U0 C18 C14 C 0 1 N N N 262.901 37.918 137.568 7.364 0.959 -0.009 C18 9U0 20 9U0 C19 C15 C 0 1 N N N 263.198 38.072 139.086 6.839 -0.202 -0.880 C19 9U0 21 9U0 HC15 H1 H 0 0 N N N 264.411 33.909 138.252 4.036 1.184 -1.080 HC15 9U0 22 9U0 H3 H3 H 0 1 N N N 264.638 36.689 137.360 6.042 2.506 -0.839 H3 9U0 23 9U0 H4 H4 H 0 1 N N N 263.596 36.776 135.900 6.552 2.807 0.860 H4 9U0 24 9U0 H5 H5 H 0 1 N N N 262.400 37.585 141.032 6.055 -0.911 0.999 H5 9U0 25 9U0 H6 H6 H 0 1 N N N 261.635 36.701 139.669 6.745 -2.177 -0.036 H6 9U0 26 9U0 H7 H7 H 0 1 N N N 263.360 35.605 141.549 4.715 -1.425 -1.648 H7 9U0 27 9U0 H8 H8 H 0 1 N N N 264.462 35.916 140.166 4.498 -2.635 -0.362 H8 9U0 28 9U0 HXT H9 H 0 1 N Y N 257.703 35.270 148.014 -8.382 1.190 -1.822 HXT 9U0 29 9U0 HA H10 H 0 1 N N N 255.813 34.449 145.184 -5.917 1.437 0.768 HA 9U0 30 9U0 H H11 H 0 1 N N N 255.345 36.698 144.519 -6.343 -1.425 1.334 H11 9U0 31 9U0 H2 H12 H 0 1 N Y N 256.836 36.875 143.878 -5.419 -0.374 2.233 H12 9U0 32 9U0 HB2 H14 H 0 1 N N N 257.972 33.524 144.826 -4.947 -1.095 -0.630 H14 9U0 33 9U0 HB3 H15 H 0 1 N N N 258.652 35.105 144.311 -4.786 0.549 -1.292 H15 9U0 34 9U0 HG2 H16 H 0 1 N N N 257.522 35.020 142.210 -3.472 1.223 0.699 H16 9U0 35 9U0 HG3 H17 H 0 1 N N N 256.465 33.670 142.746 -3.632 -0.422 1.362 H17 9U0 36 9U0 HD2 H18 H 0 1 N N N 258.172 32.705 141.349 -2.460 -1.336 -0.623 H18 9U0 37 9U0 HD3 H19 H 0 1 N N N 258.566 32.268 143.046 -2.299 0.308 -1.285 H19 9U0 38 9U0 HE2 H20 H 0 1 N N N 260.242 34.174 143.065 -0.985 0.982 0.707 H20 9U0 39 9U0 HE3 H21 H 0 1 N N N 259.929 34.391 141.309 -1.146 -0.662 1.369 H21 9U0 40 9U0 HZ H22 H 0 1 N N N 260.636 31.637 141.787 -0.044 -0.851 -1.225 H22 9U0 41 9U0 H23 H23 H 0 1 N N N 261.789 34.633 139.603 3.623 -0.870 1.183 H23 9U0 42 9U0 H24 H24 H 0 1 N N N 262.140 35.010 136.790 5.014 1.048 1.681 H24 9U0 43 9U0 H26 H26 H 0 1 N N N 263.260 38.813 137.039 8.251 1.389 -0.474 H26 9U0 44 9U0 H27 H27 H 0 1 N N N 261.815 37.816 137.422 7.621 0.582 0.981 H27 9U0 45 9U0 H28 H28 H 0 1 N N N 264.291 38.030 139.205 7.678 -0.657 -1.408 H28 9U0 46 9U0 H29 H29 H 0 1 N N N 262.835 39.066 139.385 6.133 0.192 -1.611 H29 9U0 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9U0 C17 C16 SING N N 1 9U0 C17 C18 SING N N 2 9U0 C16 C15 DOUB N E 3 9U0 C18 C19 SING N N 4 9U0 C15 C14 SING N N 5 9U0 C19 C20 SING N N 6 9U0 C14 O13 SING N N 7 9U0 C14 C21 SING N N 8 9U0 C20 C21 SING N N 9 9U0 O13 C11 SING N N 10 9U0 C11 NZ SING N N 11 9U0 C11 O12 DOUB N N 12 9U0 NZ CE SING N N 13 9U0 CE CD SING N N 14 9U0 CD CG SING N N 15 9U0 CG CB SING N N 16 9U0 N CA SING N N 17 9U0 CB CA SING N N 18 9U0 CA C SING N N 19 9U0 C O DOUB N N 20 9U0 C OXT SING N N 21 9U0 C15 HC15 SING N N 22 9U0 C17 H3 SING N N 23 9U0 C17 H4 SING N N 24 9U0 C20 H5 SING N N 25 9U0 C20 H6 SING N N 26 9U0 C21 H7 SING N N 27 9U0 C21 H8 SING N N 28 9U0 OXT HXT SING N N 29 9U0 CA HA SING N N 30 9U0 N H SING N N 31 9U0 N H2 SING N N 32 9U0 CB HB2 SING N N 33 9U0 CB HB3 SING N N 34 9U0 CG HG2 SING N N 35 9U0 CG HG3 SING N N 36 9U0 CD HD2 SING N N 37 9U0 CD HD3 SING N N 38 9U0 CE HE2 SING N N 39 9U0 CE HE3 SING N N 40 9U0 NZ HZ SING N N 41 9U0 C14 H23 SING N N 42 9U0 C16 H24 SING N N 43 9U0 C18 H26 SING N N 44 9U0 C18 H27 SING N N 45 9U0 C19 H28 SING N N 46 9U0 C19 H29 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9U0 SMILES ACDLabs 12.01 "C=1C(CCCCCC=1)OC(NCCCCC(C(O)=O)N)=O" 9U0 InChI InChI 1.03 "InChI=1S/C15H26N2O4/c16-13(14(18)19)10-6-7-11-17-15(20)21-12-8-4-2-1-3-5-9-12/h4,8,12-13H,1-3,5-7,9-11,16H2,(H,17,20)(H,18,19)/t12-,13+/m1/s1" 9U0 InChIKey InChI 1.03 RIPRFLAPFPCYBY-OLZOCXBDSA-N 9U0 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)O[C@H]/1CCCCC\C=C/1)C(O)=O" 9U0 SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)O[CH]1CCCCCC=C1)C(O)=O" 9U0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CCC=CC(CC1)OC(=O)NCCCC[C@@H](C(=O)O)N" 9U0 SMILES "OpenEye OEToolkits" 2.0.6 "C1CCC=CC(CC1)OC(=O)NCCCCC(C(=O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9U0 "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-({[(1S,2E)-cyclooct-2-en-1-yl]oxy}carbonyl)-L-lysine" 9U0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-6-(cyclooct-2-en-1-yloxycarbonylamino)hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9U0 "Create component" 2018-07-31 PDBJ 9U0 "Initial release" 2019-04-17 RCSB ##