data_9UR # _chem_comp.id 9UR _chem_comp.name "(2S,5R,7R,8R,10S,12aR,14R,15R,15aR,16R)-7-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxyoctahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N10 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-27 _chem_comp.pdbx_modified_date 2022-10-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 674.411 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9UR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SHP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9UR C2 C1 C 0 1 Y N N -9.685 -1.408 -33.922 7.859 -0.256 0.128 C2 9UR 1 9UR N01 N1 N 0 1 N N N -8.693 1.896 -32.410 7.203 -3.605 -0.937 N01 9UR 2 9UR C6 C2 C 0 1 Y N N -8.884 0.861 -33.401 7.010 -2.321 -0.458 C6 9UR 3 9UR N1 N2 N 0 1 Y N N -9.484 -0.342 -32.970 8.034 -1.483 -0.328 N1 9UR 4 9UR N3 N3 N 0 1 Y N N -9.292 -1.259 -35.324 6.678 0.205 0.482 N3 9UR 5 9UR C4 C3 C 0 1 Y N N -8.666 0.027 -35.768 5.596 -0.563 0.391 C4 9UR 6 9UR C5 C4 C 0 1 Y N N -8.463 1.039 -34.881 5.730 -1.877 -0.089 C5 9UR 7 9UR N7 N4 N 0 1 Y N N -7.890 2.067 -35.526 4.494 -2.432 -0.080 N7 9UR 8 9UR C8 C5 C 0 1 Y N N -7.744 1.668 -36.817 3.632 -1.564 0.364 C8 9UR 9 9UR N9 N5 N 0 1 Y N N -8.238 0.419 -36.963 4.263 -0.395 0.668 N9 9UR 10 9UR "C1'" C6 C 0 1 N N R -8.242 -0.376 -38.152 3.633 0.819 1.194 "C1'" 9UR 11 9UR "C2'" C7 C 0 1 N N R -9.469 -0.332 -38.995 3.303 1.775 0.038 "C2'" 9UR 12 9UR "O2'" O1 O 0 1 N N N -9.334 -1.435 -39.883 4.119 2.946 0.113 "O2'" 9UR 13 9UR "C3'" C8 C 0 1 N N R -9.261 0.834 -39.814 1.818 2.142 0.236 "C3'" 9UR 14 9UR "C4'" C9 C 0 1 N N R -7.767 0.781 -40.112 1.420 1.472 1.559 "C4'" 9UR 15 9UR C16 C10 C 0 1 N N N -7.047 2.079 -40.374 0.047 0.813 1.430 C16 9UR 16 9UR O17 O2 O 0 1 N N N -7.263 2.997 -39.353 -0.878 1.460 2.308 O17 9UR 17 9UR P18 P1 P 0 1 N N N -7.013 4.585 -39.703 -2.233 0.764 2.829 P18 9UR 18 9UR O19 O3 O 0 1 N N N -6.528 5.170 -38.465 -1.941 -0.777 3.193 O19 9UR 19 9UR O20 O4 O 0 1 N N N -8.291 5.476 -40.196 -3.350 0.841 1.669 O20 9UR 20 9UR C21 C11 C 0 1 N N R -9.604 5.013 -40.038 -3.014 1.022 0.297 C21 9UR 21 9UR C22 C12 C 0 1 N N R -10.098 4.584 -41.359 -3.007 2.531 -0.064 C22 9UR 22 9UR O23 O5 O 0 1 N N N -9.587 5.439 -42.373 -3.828 3.269 0.844 O23 9UR 23 9UR C24 C13 C 0 1 N N R -11.580 4.755 -41.211 -3.602 2.571 -1.491 C24 9UR 24 9UR C25 C14 C 0 1 N N N -12.232 3.518 -40.725 -2.453 2.584 -2.504 C25 9UR 25 9UR O26 O6 O 0 1 N N N -12.008 3.392 -39.353 -1.333 1.888 -1.954 O26 9UR 26 9UR P27 P2 P 0 1 N N N -11.464 1.911 -38.900 0.125 2.546 -1.793 P27 9UR 27 9UR O28 O7 O 0 1 N N N -9.804 1.867 -39.022 1.035 1.622 -0.840 O28 9UR 28 9UR O29 O8 O 0 1 N N N -11.862 1.714 -37.471 0.819 2.671 -3.240 O29 9UR 29 9UR O30 O9 O 0 1 N N N -12.140 0.809 -39.607 -0.007 3.893 -1.192 O30 9UR 30 9UR O31 O10 O 0 1 N N N -11.797 5.800 -40.194 -4.370 1.374 -1.655 O31 9UR 31 9UR C32 C15 C 0 1 N N R -10.525 6.132 -39.625 -4.084 0.418 -0.631 C32 9UR 32 9UR N33 N6 N 0 1 Y N N -10.604 6.186 -38.200 -3.577 -0.817 -1.234 N33 9UR 33 9UR C34 C16 C 0 1 Y N N -11.079 5.261 -37.326 -2.971 -0.931 -2.451 C34 9UR 34 9UR N35 N7 N 0 1 Y N N -10.953 5.732 -36.060 -2.650 -2.175 -2.663 N35 9UR 35 9UR C36 C17 C 0 1 Y N N -10.185 7.212 -37.484 -3.619 -2.059 -0.679 C36 9UR 36 9UR C37 C18 C 0 1 Y N N -10.394 6.949 -36.176 -3.031 -2.919 -1.599 C37 9UR 37 9UR C38 C19 C 0 1 N N N -9.986 8.012 -35.136 -2.942 -4.342 -1.256 C38 9UR 38 9UR N39 N8 N 0 1 N N N -9.400 9.247 -35.535 -3.429 -4.749 -0.073 N39 9UR 39 9UR C40 C20 C 0 1 N N N -9.195 9.475 -36.938 -3.978 -3.901 0.770 C40 9UR 40 9UR N41 N9 N 0 1 N N N -8.609 10.701 -37.420 -4.457 -4.374 1.962 N41 9UR 41 9UR N42 N10 N 0 1 N N N -9.574 8.494 -37.931 -4.089 -2.573 0.502 N42 9UR 42 9UR O43 O11 O 0 1 N N N -10.165 7.788 -33.992 -2.435 -5.139 -2.029 O43 9UR 43 9UR O44 O12 O 0 1 N N N -5.961 4.742 -40.701 -2.720 1.472 4.034 O44 9UR 44 9UR "O4'" O13 O 0 1 N N N -7.174 0.118 -38.979 2.411 0.481 1.854 "O4'" 9UR 45 9UR H1 H1 H 0 1 N N N -10.134 -2.334 -33.593 8.718 0.392 0.219 H1 9UR 46 9UR H2 H2 H 0 1 N N N -9.035 1.579 -31.526 8.094 -3.903 -1.182 H2 9UR 47 9UR H3 H3 H 0 1 N N N -7.719 2.108 -32.333 6.449 -4.208 -1.028 H3 9UR 48 9UR H4 H4 H 0 1 N N N -7.301 2.259 -37.605 2.573 -1.744 0.475 H4 9UR 49 9UR H5 H5 H 0 1 N N N -8.038 -1.424 -37.888 4.308 1.309 1.896 H5 9UR 50 9UR H6 H6 H 0 1 N N N -10.403 -0.320 -38.414 3.446 1.276 -0.920 H6 9UR 51 9UR H7 H7 H 0 1 N N N -9.461 -2.245 -39.404 5.067 2.771 0.041 H7 9UR 52 9UR H8 H8 H 0 1 N N N -9.817 0.738 -40.758 1.700 3.223 0.307 H8 9UR 53 9UR H9 H9 H 0 1 N N N -7.632 0.142 -40.997 1.403 2.215 2.357 H9 9UR 54 9UR H10 H10 H 0 1 N N N -5.968 1.880 -40.453 -0.304 0.904 0.402 H10 9UR 55 9UR H11 H11 H 0 1 N N N -7.411 2.505 -41.320 0.124 -0.241 1.696 H11 9UR 56 9UR H12 H12 H 0 1 N N N -5.652 5.512 -38.598 -1.274 -0.899 3.882 H12 9UR 57 9UR H13 H13 H 0 1 N N N -9.662 4.187 -39.314 -2.038 0.592 0.078 H13 9UR 58 9UR H14 H14 H 0 1 N N N -9.847 3.530 -41.549 -1.989 2.921 -0.062 H14 9UR 59 9UR H15 H15 H 0 1 N N N -8.648 5.314 -42.450 -3.911 4.207 0.626 H15 9UR 60 9UR H16 H16 H 0 1 N N N -12.019 5.062 -42.172 -4.228 3.447 -1.612 H16 9UR 61 9UR H17 H17 H 0 1 N N N -13.314 3.571 -40.918 -2.772 2.092 -3.423 H17 9UR 62 9UR H18 H18 H 0 1 N N N -11.809 2.648 -41.249 -2.171 3.614 -2.720 H18 9UR 63 9UR H19 H19 H 0 1 N N N -12.428 0.954 -37.401 0.326 3.218 -3.867 H19 9UR 64 9UR H20 H20 H 0 1 N N N -10.154 7.085 -40.031 -4.989 0.205 -0.062 H20 9UR 65 9UR H21 H21 H 0 1 N N N -11.492 4.301 -37.597 -2.786 -0.115 -3.133 H21 9UR 66 9UR H22 H22 H 0 1 N N N -8.336 11.413 -36.773 -4.388 -5.318 2.171 H22 9UR 67 9UR H23 H23 H 0 1 N N N -8.475 10.839 -38.401 -4.865 -3.764 2.597 H23 9UR 68 9UR H24 H24 H 0 1 N N N -9.428 8.674 -38.904 -4.503 -1.984 1.152 H24 9UR 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9UR O23 C22 SING N N 1 9UR C22 C24 SING N N 2 9UR C22 C21 SING N N 3 9UR C24 C25 SING N N 4 9UR C24 O31 SING N N 5 9UR C25 O26 SING N N 6 9UR O44 P18 DOUB N N 7 9UR C16 "C4'" SING N N 8 9UR C16 O17 SING N N 9 9UR O20 C21 SING N N 10 9UR O20 P18 SING N N 11 9UR O31 C32 SING N N 12 9UR "C4'" "C3'" SING N N 13 9UR "C4'" "O4'" SING N N 14 9UR C21 C32 SING N N 15 9UR "O2'" "C2'" SING N N 16 9UR "C3'" O28 SING N N 17 9UR "C3'" "C2'" SING N N 18 9UR P18 O17 SING N N 19 9UR P18 O19 SING N N 20 9UR C32 N33 SING N N 21 9UR O30 P27 DOUB N N 22 9UR O26 P27 SING N N 23 9UR O28 P27 SING N N 24 9UR "C2'" "C1'" SING N N 25 9UR "O4'" "C1'" SING N N 26 9UR P27 O29 SING N N 27 9UR N33 C36 SING Y N 28 9UR N33 C34 SING Y N 29 9UR "C1'" N9 SING N N 30 9UR N42 C36 SING N N 31 9UR N42 C40 SING N N 32 9UR C36 C37 DOUB Y N 33 9UR N41 C40 SING N N 34 9UR C34 N35 DOUB Y N 35 9UR N9 C8 SING Y N 36 9UR N9 C4 SING Y N 37 9UR C40 N39 DOUB N N 38 9UR C8 N7 DOUB Y N 39 9UR C37 N35 SING Y N 40 9UR C37 C38 SING N N 41 9UR C4 N3 DOUB Y N 42 9UR C4 C5 SING Y N 43 9UR N39 C38 SING N N 44 9UR N7 C5 SING Y N 45 9UR N3 C2 SING Y N 46 9UR C38 O43 DOUB N N 47 9UR C5 C6 DOUB Y N 48 9UR C2 N1 DOUB Y N 49 9UR C6 N1 SING Y N 50 9UR C6 N01 SING N N 51 9UR C2 H1 SING N N 52 9UR N01 H2 SING N N 53 9UR N01 H3 SING N N 54 9UR C8 H4 SING N N 55 9UR "C1'" H5 SING N N 56 9UR "C2'" H6 SING N N 57 9UR "O2'" H7 SING N N 58 9UR "C3'" H8 SING N N 59 9UR "C4'" H9 SING N N 60 9UR C16 H10 SING N N 61 9UR C16 H11 SING N N 62 9UR O19 H12 SING N N 63 9UR C21 H13 SING N N 64 9UR C22 H14 SING N N 65 9UR O23 H15 SING N N 66 9UR C24 H16 SING N N 67 9UR C25 H17 SING N N 68 9UR C25 H18 SING N N 69 9UR O29 H19 SING N N 70 9UR C32 H20 SING N N 71 9UR C34 H21 SING N N 72 9UR N41 H22 SING N N 73 9UR N41 H23 SING N N 74 9UR N42 H24 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9UR SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OC3C(OC(COP(=O)(O)OC2C1O)C3O)n1cnc2c1NC(N)=NC2=O" 9UR InChI InChI 1.03 "InChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)18-11(32)12-7(41-18)2-39-45(36,37)43-13-10(31)6(1-38-44(34,35)42-12)40-19(13)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12+,13-,18-,19-/m1/s1" 9UR InChIKey InChI 1.03 XRILCFTWUCUKJR-BPNBKBNUSA-N 9UR SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@@H]4CO[P](O)(=O)O[C@@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cnc7c(N)ncnc67)c2N1" 9UR SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cnc7c(N)ncnc67)c2N1" 9UR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6NC(=NC7=O)N)O)O)O)N" 9UR SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6NC(=NC7=O)N)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9UR "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R,7R,8R,10S,12aR,14R,15R,15aR,16R)-7-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxyoctahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione" 9UR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9UR "Create component" 2021-10-27 RCSB 9UR "Initial release" 2022-10-19 RCSB #