data_9UY # _chem_comp.id 9UY _chem_comp.name "3-[5-[[(3~{R},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Billeverdin IXa, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-13 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.678 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9UY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5VIV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9UY O2D O1 O 0 1 N N N 7.643 3.674 -10.173 -2.066 4.781 -0.712 O2D 9UY 1 9UY CGD C1 C 0 1 N N N 7.035 2.602 -10.266 -1.098 4.319 0.095 CGD 9UY 2 9UY O1D O2 O 0 1 N N N 7.260 1.788 -11.194 -0.906 4.840 1.168 O1D 9UY 3 9UY CBD C2 C 0 1 N N N 5.942 2.297 -9.257 -0.250 3.151 -0.339 CBD 9UY 4 9UY CAD C3 C 0 1 N N N 4.564 2.495 -9.930 0.770 2.828 0.755 CAD 9UY 5 9UY C3D C4 C 0 1 Y N N 3.474 2.407 -8.902 1.619 1.661 0.322 C3D 9UY 6 9UY C2D C5 C 0 1 Y N N 2.665 3.515 -8.397 2.829 1.730 -0.396 C2D 9UY 7 9UY CMD C6 C 0 1 N N N 2.706 4.948 -8.793 3.513 2.986 -0.873 CMD 9UY 8 9UY C1D C7 C 0 1 Y N N 1.760 2.896 -7.424 3.263 0.466 -0.580 C1D 9UY 9 9UY CHD C8 C 0 1 N N N 0.806 3.727 -6.644 4.523 0.060 -1.299 CHD 9UY 10 9UY C4C C9 C 0 1 N N N 0.145 3.435 -5.498 5.687 0.114 -0.344 C4C 9UY 11 9UY C3C C10 C 0 1 N N R -0.903 4.358 -4.931 7.119 -0.224 -0.698 C3C 9UY 12 9UY CAC C11 C 0 1 N N N -0.178 5.575 -4.429 7.232 -1.661 -1.139 CAC 9UY 13 9UY CBC C12 C 0 1 N N N 0.490 5.499 -3.299 7.700 -1.946 -2.329 CBC 9UY 14 9UY C2C C13 C 0 1 N N R -1.492 3.576 -3.766 7.873 -0.000 0.630 C2C 9UY 15 9UY CMC C14 C 0 1 N N N -2.986 3.249 -3.811 8.924 1.100 0.478 CMC 9UY 16 9UY C1C C15 C 0 1 N N N -0.589 2.381 -3.708 6.768 0.438 1.571 C1C 9UY 17 9UY OC O3 O 0 1 N N N -0.619 1.581 -2.799 6.908 0.725 2.741 OC 9UY 18 9UY NC N1 N 0 1 N N N 0.249 2.353 -4.739 5.612 0.461 0.893 NC 9UY 19 9UY C4D C16 C 0 1 Y N N 2.983 1.244 -8.174 1.362 0.357 0.555 C4D 9UY 20 9UY ND N2 N 0 1 Y N N 1.968 1.557 -7.303 2.365 -0.381 -0.001 ND 9UY 21 9UY CHA C17 C 0 1 N N N 3.557 -0.092 -8.431 0.171 -0.189 1.299 CHA 9UY 22 9UY C1A C18 C 0 1 Y N N 3.192 -1.391 -7.847 -0.992 -0.331 0.351 C1A 9UY 23 9UY C2A C19 C 0 1 Y N N 3.787 -2.645 -8.317 -1.233 -1.388 -0.451 C2A 9UY 24 9UY CAA C20 C 0 1 N N N 4.814 -2.884 -9.386 -0.394 -2.635 -0.559 CAA 9UY 25 9UY CBA C21 C 0 1 N N N 6.151 -2.908 -8.671 -0.890 -3.673 0.451 CBA 9UY 26 9UY CGA C22 C 0 1 N N N 7.338 -3.199 -9.535 -0.051 -4.920 0.342 CGA 9UY 27 9UY O2A O4 O 0 1 N N N 7.175 -3.314 -10.761 0.850 -4.974 -0.461 O2A 9UY 28 9UY O1A O5 O 0 1 N N N 8.405 -3.282 -8.994 -0.305 -5.971 1.137 O1A 9UY 29 9UY C3A C23 C 0 1 Y N N 3.195 -3.658 -7.477 -2.414 -1.113 -1.168 C3A 9UY 30 9UY CMA C24 C 0 1 N N N 3.420 -5.125 -7.564 -3.071 -2.011 -2.184 CMA 9UY 31 9UY C4A C25 C 0 1 Y N N 2.326 -2.889 -6.589 -2.850 0.102 -0.777 C4A 9UY 32 9UY NA N3 N 0 1 Y N N 2.320 -1.560 -6.837 -1.984 0.585 0.159 NA 9UY 33 9UY CHB C26 C 0 1 N N N 1.488 -3.447 -5.525 -4.084 0.804 -1.283 CHB 9UY 34 9UY C1B C27 C 0 1 N N N 1.883 -4.583 -4.640 -5.284 0.338 -0.500 C1B 9UY 35 9UY C2B C28 C 0 1 N N N 0.900 -5.258 -3.763 -6.607 0.787 -0.715 C2B 9UY 36 9UY CMB C29 C 0 1 N N N -0.544 -4.868 -3.604 -7.052 1.793 -1.744 CMB 9UY 37 9UY C3B C30 C 0 1 N N N 1.656 -6.367 -3.153 -7.407 0.140 0.184 C3B 9UY 38 9UY CAB C31 C 0 1 N N N 1.036 -7.298 -2.143 -8.809 0.273 0.341 CAB 9UY 39 9UY CBB C32 C 0 1 N N N 1.481 -8.419 -1.577 -9.450 -0.441 1.281 CBB 9UY 40 9UY C4B C33 C 0 1 N N N 3.010 -6.171 -3.743 -6.478 -0.743 0.972 C4B 9UY 41 9UY OB O6 O 0 1 N N N 3.998 -6.924 -3.502 -6.781 -1.492 1.876 OB 9UY 42 9UY NB N4 N 0 1 N N N 3.114 -5.140 -4.623 -5.243 -0.544 0.471 NB 9UY 43 9UY H1 H1 H 0 1 N N N 8.264 3.750 -10.888 -2.584 5.532 -0.391 H1 9UY 44 9UY H2 H2 H 0 1 N N N 6.038 1.257 -8.913 -0.886 2.283 -0.510 H2 9UY 45 9UY H3 H3 H 0 1 N N N 6.034 2.977 -8.398 0.274 3.405 -1.260 H3 9UY 46 9UY H4 H4 H 0 1 N N N 4.532 3.484 -10.411 1.407 3.696 0.926 H4 9UY 47 9UY H5 H5 H 0 1 N N N 4.413 1.713 -10.689 0.247 2.575 1.677 H5 9UY 48 9UY H6 H6 H 0 1 N N N 2.020 5.116 -9.637 4.199 3.339 -0.104 H6 9UY 49 9UY H7 H7 H 0 1 N N N 2.399 5.573 -7.941 4.068 2.773 -1.786 H7 9UY 50 9UY H8 H8 H 0 1 N N N 3.730 5.216 -9.094 2.765 3.753 -1.073 H8 9UY 51 9UY H9 H9 H 0 1 N N N 1.374 4.638 -6.404 4.412 -0.955 -1.681 H9 9UY 52 9UY H10 H10 H 0 1 N N N 0.009 3.970 -7.362 4.703 0.743 -2.130 H10 9UY 53 9UY H11 H11 H 0 1 N N N -1.670 4.615 -5.677 7.492 0.445 -1.473 H11 9UY 54 9UY H12 H12 H 0 1 N N N -0.205 6.499 -4.988 6.928 -2.455 -0.474 H12 9UY 55 9UY H13 H13 H 0 1 N N N 1.017 6.364 -2.924 8.005 -1.151 -2.994 H13 9UY 56 9UY H14 H14 H 0 1 N N N 0.512 4.572 -2.746 7.781 -2.975 -2.645 H14 9UY 57 9UY H15 H15 H 0 1 N N N -1.317 4.167 -2.855 8.330 -0.928 0.976 H15 9UY 58 9UY H16 H16 H 0 1 N N N -3.266 2.685 -2.909 8.436 2.032 0.190 H16 9UY 59 9UY H17 H17 H 0 1 N N N -3.565 4.184 -3.853 9.443 1.241 1.427 H17 9UY 60 9UY H18 H18 H 0 1 N N N -3.202 2.643 -4.704 9.642 0.813 -0.290 H18 9UY 61 9UY H19 H19 H 0 1 N N N 1.479 0.926 -6.700 2.430 -1.348 0.016 H19 9UY 62 9UY H20 H20 H 0 1 N N N 3.434 -0.237 -9.514 0.420 -1.164 1.718 H20 9UY 63 9UY H21 H21 H 0 1 N N N 4.625 0.021 -8.195 -0.099 0.494 2.105 H21 9UY 64 9UY H22 H22 H 0 1 N N N 4.791 -2.073 -10.129 -0.476 -3.042 -1.567 H22 9UY 65 9UY H23 H23 H 0 1 N N N 4.630 -3.846 -9.887 0.647 -2.392 -0.349 H23 9UY 66 9UY H24 H24 H 0 1 N N N 6.103 -3.680 -7.889 -0.808 -3.266 1.459 H24 9UY 67 9UY H25 H25 H 0 1 N N N 6.304 -1.923 -8.205 -1.931 -3.916 0.240 H25 9UY 68 9UY H26 H26 H 0 1 N N N 9.078 -3.445 -9.644 0.259 -6.749 1.031 H26 9UY 69 9UY H27 H27 H 0 1 N N N 4.260 -5.407 -6.912 -3.784 -2.666 -1.683 H27 9UY 70 9UY H28 H28 H 0 1 N N N 2.512 -5.655 -7.241 -3.593 -1.403 -2.923 H28 9UY 71 9UY H29 H29 H 0 1 N N N 3.655 -5.399 -8.603 -2.311 -2.614 -2.681 H29 9UY 72 9UY H30 H30 H 0 1 N N N 1.784 -0.856 -6.371 -2.059 1.439 0.612 H30 9UY 73 9UY H31 H31 H 0 1 N N N 1.273 -2.607 -4.848 -3.966 1.881 -1.161 H31 9UY 74 9UY H32 H32 H 0 1 N N N 0.559 -3.767 -6.019 -4.226 0.572 -2.339 H32 9UY 75 9UY H33 H33 H 0 1 N N N -1.031 -5.547 -2.888 -7.307 1.277 -2.670 H33 9UY 76 9UY H34 H34 H 0 1 N N N -0.606 -3.835 -3.230 -7.926 2.329 -1.375 H34 9UY 77 9UY H35 H35 H 0 1 N N N -1.052 -4.937 -4.578 -6.245 2.501 -1.934 H35 9UY 78 9UY H36 H36 H 0 1 N N N 0.049 -7.002 -1.818 -9.362 0.949 -0.295 H36 9UY 79 9UY H37 H37 H 0 1 N N N 0.865 -8.944 -0.862 -8.897 -1.116 1.916 H37 9UY 80 9UY H38 H38 H 0 1 N N N 2.458 -8.802 -1.833 -10.519 -0.340 1.400 H38 9UY 81 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9UY O1D CGD DOUB N N 1 9UY O2A CGA DOUB N N 2 9UY CGD O2D SING N N 3 9UY CGD CBD SING N N 4 9UY CAD CBD SING N N 5 9UY CAD C3D SING N N 6 9UY CGA O1A SING N N 7 9UY CGA CBA SING N N 8 9UY CAA CBA SING N N 9 9UY CAA C2A SING N N 10 9UY C3D C2D SING Y N 11 9UY C3D C4D DOUB Y N 12 9UY CMD C2D SING N N 13 9UY CHA C4D SING N N 14 9UY CHA C1A SING N N 15 9UY C2D C1D DOUB Y N 16 9UY C2A C1A DOUB Y N 17 9UY C2A C3A SING Y N 18 9UY C4D ND SING Y N 19 9UY C1A NA SING Y N 20 9UY CMA C3A SING N N 21 9UY C3A C4A DOUB Y N 22 9UY C1D ND SING Y N 23 9UY C1D CHD SING N N 24 9UY NA C4A SING Y N 25 9UY CHD C4C SING N N 26 9UY C4A CHB SING N N 27 9UY CHB C1B SING N N 28 9UY C4C C3C SING N N 29 9UY C4C NC DOUB N N 30 9UY C3C CAC SING N N 31 9UY C3C C2C SING N N 32 9UY NC C1C SING N N 33 9UY C1B NB DOUB N N 34 9UY C1B C2B SING N N 35 9UY NB C4B SING N N 36 9UY CAC CBC DOUB N N 37 9UY CMC C2C SING N N 38 9UY C2C C1C SING N N 39 9UY C2B CMB SING N N 40 9UY C2B C3B DOUB N N 41 9UY C4B OB DOUB N N 42 9UY C4B C3B SING N N 43 9UY C1C OC DOUB N N 44 9UY C3B CAB SING N N 45 9UY CAB CBB DOUB N N 46 9UY O2D H1 SING N N 47 9UY CBD H2 SING N N 48 9UY CBD H3 SING N N 49 9UY CAD H4 SING N N 50 9UY CAD H5 SING N N 51 9UY CMD H6 SING N N 52 9UY CMD H7 SING N N 53 9UY CMD H8 SING N N 54 9UY CHD H9 SING N N 55 9UY CHD H10 SING N N 56 9UY C3C H11 SING N N 57 9UY CAC H12 SING N N 58 9UY CBC H13 SING N N 59 9UY CBC H14 SING N N 60 9UY C2C H15 SING N N 61 9UY CMC H16 SING N N 62 9UY CMC H17 SING N N 63 9UY CMC H18 SING N N 64 9UY ND H19 SING N N 65 9UY CHA H20 SING N N 66 9UY CHA H21 SING N N 67 9UY CAA H22 SING N N 68 9UY CAA H23 SING N N 69 9UY CBA H24 SING N N 70 9UY CBA H25 SING N N 71 9UY O1A H26 SING N N 72 9UY CMA H27 SING N N 73 9UY CMA H28 SING N N 74 9UY CMA H29 SING N N 75 9UY NA H30 SING N N 76 9UY CHB H31 SING N N 77 9UY CHB H32 SING N N 78 9UY CMB H33 SING N N 79 9UY CMB H34 SING N N 80 9UY CMB H35 SING N N 81 9UY CAB H36 SING N N 82 9UY CBB H37 SING N N 83 9UY CBB H38 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9UY InChI InChI 1.03 "InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,19-20,34-35H,1-2,9-15H2,3-6H3,(H,38,39)(H,40,41)/t19-,20-/m1/s1" 9UY InChIKey InChI 1.03 IAVYOZQSRLDKLE-WOJBJXKFSA-N 9UY SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1[C@@H](C=C)C(=NC1=O)Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C" 9UY SMILES CACTVS 3.385 "C[CH]1[CH](C=C)C(=NC1=O)Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C" 9UY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c([nH]c1CC2=NC(=O)[C@@H]([C@H]2C=C)C)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O" 9UY SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(c([nH]c1CC2=NC(=O)C(C2C=C)C)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id 9UY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "3-[5-[[(3~{R},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9UY "Create component" 2017-06-13 RCSB 9UY "Modify synonyms" 2017-06-13 RCSB 9UY "Initial release" 2017-06-21 RCSB 9UY "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9UY _pdbx_chem_comp_synonyms.name "Billeverdin IXa, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##