data_9VF # _chem_comp.id 9VF _chem_comp.name "(2S)-2-azanyl-6-(trimethylsilylmethoxycarbonylamino)hexanoic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H24 N2 O4 Si" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-16 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9VF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ABK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9VF CE C1 C 0 1 N N N 125.390 32.498 14.320 -0.214 0.337 0.488 CE 9VF 1 9VF CB C2 C 0 1 N N N 122.995 33.264 17.406 -3.990 0.270 -0.260 CB 9VF 2 9VF C1 C3 C 0 1 N N N 130.606 33.484 10.712 5.183 -0.689 -2.035 C1 9VF 3 9VF C3 C4 C 0 1 N N N 129.189 31.111 11.448 3.940 -1.700 0.551 C3 9VF 4 9VF C4 C5 C 0 1 N N N 128.012 34.175 11.853 6.810 -0.690 0.536 C4 9VF 5 9VF C5 C6 C 0 1 N N N 129.963 32.776 13.812 4.506 1.268 0.194 C5 9VF 6 9VF C7 C7 C 0 1 N N N 127.684 31.857 14.342 2.157 0.855 0.267 C7 9VF 7 9VF CG C8 C 0 1 N N N 125.045 32.751 15.784 -1.520 0.643 -0.248 CG 9VF 8 9VF CD C9 C 0 1 N N N 123.537 32.646 16.096 -2.684 -0.036 0.476 CD 9VF 9 9VF CA C10 C 0 1 N N S 123.221 34.778 17.614 -5.155 -0.409 0.464 CA 9VF 10 9VF C C11 C 0 1 N N N 122.070 35.846 17.539 -6.453 -0.009 -0.187 C 9VF 11 9VF NZ N1 N 0 1 N N N 126.754 32.924 14.130 0.901 0.987 -0.205 NZ 9VF 12 9VF N N2 N 0 1 N N N 123.917 35.038 18.836 -4.997 -1.867 0.385 N 9VF 13 9VF O6 O1 O 0 1 N N N 129.089 31.940 14.610 3.181 1.453 -0.370 O6 9VF 14 9VF O8 O2 O 0 1 N N N 127.172 30.794 14.310 2.364 0.197 1.267 O8 9VF 15 9VF OXT O3 O 0 1 N Y N 122.349 37.020 18.180 -7.010 1.178 0.100 OXT 9VF 16 9VF O O4 O 0 1 N N N 120.853 35.764 16.877 -6.993 -0.756 -0.969 O 9VF 17 9VF SI SI1 SI 0 0 N N N 129.384 32.884 12.019 5.110 -0.453 -0.189 SI 9VF 18 9VF HE2 H1 H 0 1 N N N 124.719 33.077 13.668 -0.275 0.713 1.509 HE2 9VF 19 9VF HE3 H2 H 0 1 N N N 125.293 31.427 14.088 -0.051 -0.741 0.507 HE3 9VF 20 9VF HB2 H3 H 0 1 N N N 121.910 33.084 17.434 -4.153 1.347 -0.278 HB2 9VF 21 9VF HB3 H4 H 0 1 N N N 123.476 32.739 18.244 -3.928 -0.106 -1.281 HB3 9VF 22 9VF H11 H5 H 0 1 N N N 130.846 34.542 10.892 4.189 -0.550 -2.459 H11 9VF 23 9VF H12 H6 H 0 1 N N N 131.527 32.884 10.768 5.868 0.041 -2.468 H12 9VF 24 9VF H13 H7 H 0 1 N N N 130.158 33.375 9.713 5.536 -1.695 -2.259 H13 9VF 25 9VF H31 H8 H 0 1 N N N 128.488 30.586 12.114 4.293 -2.707 0.327 H31 9VF 26 9VF H32 H9 H 0 1 N N N 128.798 31.098 10.420 3.897 -1.562 1.631 H32 9VF 27 9VF H33 H10 H 0 1 N N N 130.167 30.608 11.475 2.946 -1.561 0.127 H33 9VF 28 9VF H41 H11 H 0 1 N N N 127.209 33.951 12.570 7.494 0.040 0.103 H41 9VF 29 9VF H42 H12 H 0 1 N N N 128.422 35.174 12.062 6.767 -0.552 1.616 H42 9VF 30 9VF H43 H13 H 0 1 N N N 127.608 34.151 10.830 7.163 -1.697 0.312 H43 9VF 31 9VF H51 H14 H 0 1 N N N 130.978 32.353 13.834 5.191 1.997 -0.238 H51 9VF 32 9VF H52 H15 H 0 1 N N N 129.979 33.788 14.243 4.464 1.406 1.275 H52 9VF 33 9VF HG2 H16 H 0 1 N N N 125.579 32.011 16.399 -1.682 1.720 -0.266 HG2 9VF 34 9VF HG3 H17 H 0 1 N N N 125.385 33.763 16.050 -1.458 0.267 -1.269 HG3 9VF 35 9VF HD2 H18 H 0 1 N N N 123.002 33.131 15.266 -2.746 0.340 1.497 HD2 9VF 36 9VF HD3 H19 H 0 1 N N N 123.287 31.575 16.118 -2.522 -1.114 0.495 HD3 9VF 37 9VF HA H20 H 0 1 N N N 123.913 35.067 16.809 -5.162 -0.101 1.509 HA 9VF 38 9VF HZ H21 H 0 1 N N N 127.019 33.855 13.880 0.736 1.512 -1.004 HZ 9VF 39 9VF H H22 H 0 1 N N N 124.048 36.024 18.942 -5.718 -2.338 0.910 H 9VF 40 9VF H2 H23 H 0 1 N Y N 123.382 34.688 19.605 -4.987 -2.179 -0.575 H2 9VF 41 9VF HXT H25 H 0 1 N Y N 121.626 37.625 18.063 -7.843 1.391 -0.342 HXT 9VF 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9VF C1 SI SING N N 1 9VF C3 SI SING N N 2 9VF C4 SI SING N N 3 9VF SI C5 SING N N 4 9VF C5 O6 SING N N 5 9VF NZ CE SING N N 6 9VF NZ C7 SING N N 7 9VF O8 C7 DOUB N N 8 9VF CE CG SING N N 9 9VF C7 O6 SING N N 10 9VF CG CD SING N N 11 9VF CD CB SING N N 12 9VF O C DOUB N N 13 9VF CB CA SING N N 14 9VF C CA SING N N 15 9VF C OXT SING N N 16 9VF CA N SING N N 17 9VF CE HE2 SING N N 18 9VF CE HE3 SING N N 19 9VF CB HB2 SING N N 20 9VF CB HB3 SING N N 21 9VF C1 H11 SING N N 22 9VF C1 H12 SING N N 23 9VF C1 H13 SING N N 24 9VF C3 H31 SING N N 25 9VF C3 H32 SING N N 26 9VF C3 H33 SING N N 27 9VF C4 H41 SING N N 28 9VF C4 H42 SING N N 29 9VF C4 H43 SING N N 30 9VF C5 H51 SING N N 31 9VF C5 H52 SING N N 32 9VF CG HG2 SING N N 33 9VF CG HG3 SING N N 34 9VF CD HD2 SING N N 35 9VF CD HD3 SING N N 36 9VF CA HA SING N N 37 9VF NZ HZ SING N N 38 9VF N H SING N N 39 9VF N H2 SING N N 40 9VF OXT HXT SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9VF InChI InChI 1.03 "InChI=1S/C11H24N2O4Si/c1-18(2,3)8-17-11(16)13-7-5-4-6-9(12)10(14)15/h9H,4-8,12H2,1-3H3,(H,13,16)(H,14,15)/t9-/m0/s1" 9VF InChIKey InChI 1.03 WFRSGOQCYVJZDV-VIFPVBQESA-N 9VF SMILES_CANONICAL CACTVS 3.385 "C[Si](C)(C)COC(=O)NCCCC[C@H](N)C(O)=O" 9VF SMILES CACTVS 3.385 "C[Si](C)(C)COC(=O)NCCCC[CH](N)C(O)=O" 9VF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[Si](C)(C)COC(=O)NCCCC[C@@H](C(=O)O)N" 9VF SMILES "OpenEye OEToolkits" 2.0.6 "C[Si](C)(C)COC(=O)NCCCCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id 9VF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-(trimethylsilylmethoxycarbonylamino)hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9VF "Create component" 2018-08-16 PDBJ 9VF "Initial release" 2019-04-17 RCSB ##