data_9VI # _chem_comp.id 9VI _chem_comp.name "N-[(1S)-1-(3-{4-chloro-3-[(methanesulfonyl)amino]-1-methyl-1H-indazol-7-yl}-4-oxo-3,4-dihydropyrido[2,3-d]pyrimidin-2-yl)-2-(3,5-difluorophenyl)ethyl]-2-[3-(trifluoromethyl)-6,7-dihydro-1H-indazol-1-yl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H27 Cl F5 N9 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-29 _chem_comp.pdbx_modified_date 2022-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 788.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9VI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SNL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9VI C10 C1 C 0 1 Y N N -19.534 26.851 -9.647 -2.721 2.056 -0.909 C10 9VI 1 9VI C13 C2 C 0 1 Y N N -19.899 24.571 -8.850 -3.160 0.874 -2.944 C13 9VI 2 9VI C15 C3 C 0 1 Y N N -17.620 25.475 -9.069 -3.247 -0.308 -0.850 C15 9VI 3 9VI C17 C4 C 0 1 N N N -15.442 25.712 -7.792 -4.695 -1.808 0.304 C17 9VI 4 9VI C20 C5 C 0 1 Y N N -13.234 25.973 -6.520 -6.086 -3.487 1.541 C20 9VI 5 9VI C21 C6 C 0 1 Y N N -11.838 25.812 -6.492 -6.132 -4.687 2.229 C21 9VI 6 9VI C22 C7 C 0 1 Y N N -11.193 25.268 -7.613 -4.968 -5.420 2.405 C22 9VI 7 9VI C24 C8 C 0 1 Y N N -13.219 25.053 -8.745 -3.704 -3.862 1.264 C24 9VI 8 9VI C26 C9 C 0 1 N N N -15.400 24.776 -10.064 -2.406 -2.324 0.113 C26 9VI 9 9VI C28 C10 C 0 1 N N N -16.360 22.883 -11.311 -0.780 -2.601 -1.739 C28 9VI 10 9VI C01 C11 C 0 1 N N N -16.220 28.348 -10.045 -2.855 0.253 2.267 C01 9VI 11 9VI C04 C12 C 0 1 Y N N -19.780 28.175 -10.125 -2.399 3.096 0.069 C04 9VI 12 9VI C07 C13 C 0 1 N N N -20.768 31.562 -9.923 -0.211 4.875 1.708 C07 9VI 13 9VI C11 C14 C 0 1 Y N N -20.412 25.795 -9.308 -2.844 2.038 -2.303 C11 9VI 14 9VI C14 C15 C 0 1 Y N N -18.492 24.425 -8.729 -3.362 -0.298 -2.227 C14 9VI 15 9VI C19 C16 C 0 1 Y N N -13.921 25.574 -7.686 -4.852 -3.065 1.048 C19 9VI 16 9VI C27 C17 C 0 1 N N S -16.133 24.360 -11.331 -1.044 -1.923 -0.393 C27 9VI 17 9VI C29 C18 C 0 1 Y N N -17.273 22.431 -12.438 0.526 -2.106 -2.303 C29 9VI 18 9VI C30 C19 C 0 1 Y N N -16.721 22.084 -13.655 0.548 -0.988 -3.117 C30 9VI 19 9VI C31 C20 C 0 1 Y N N -17.517 21.673 -14.695 1.749 -0.529 -3.631 C31 9VI 20 9VI C33 C21 C 0 1 Y N N -18.893 21.598 -14.515 2.928 -1.190 -3.330 C33 9VI 21 9VI C34 C22 C 0 1 Y N N -19.443 21.939 -13.296 2.905 -2.309 -2.516 C34 9VI 22 9VI C36 C23 C 0 1 Y N N -18.647 22.360 -12.247 1.703 -2.766 -2.003 C36 9VI 23 9VI C38 C24 C 0 1 N N N -15.686 25.603 -13.530 1.158 -1.694 0.624 C38 9VI 24 9VI C40 C25 C 0 1 N N N -14.685 25.860 -14.691 2.209 -2.122 1.616 C40 9VI 25 9VI C43 C26 C 0 1 Y N N -15.857 28.286 -17.084 5.350 -0.534 0.768 C43 9VI 26 9VI C44 C27 C 0 1 Y N N -16.583 27.145 -17.516 4.834 0.360 1.706 C44 9VI 27 9VI C45 C28 C 0 1 Y N N -16.230 26.108 -16.693 3.616 -0.127 2.126 C45 9VI 28 9VI C46 C29 C 0 1 N N N -16.862 24.691 -16.896 2.791 0.606 3.151 C46 9VI 29 9VI C47 C30 C 0 1 N N N -18.297 24.831 -17.452 3.732 1.356 4.095 C47 9VI 30 9VI C48 C31 C 0 1 N N N -18.394 25.715 -18.698 4.820 2.087 3.368 C48 9VI 31 9VI C49 C32 C 0 1 N N N -17.576 26.994 -18.671 5.370 1.628 2.247 C49 9VI 32 9VI C50 C33 C 0 1 N N N -15.879 29.702 -17.681 6.668 -0.405 0.049 C50 9VI 33 9VI C54 C34 C 0 1 Y N N -18.150 26.734 -9.549 -2.924 0.874 -0.174 C54 9VI 34 9VI F32 F1 F 0 1 N N N -16.937 21.346 -15.873 1.771 0.563 -4.426 F32 9VI 35 9VI F35 F2 F 0 1 N N N -20.794 21.869 -13.124 4.054 -2.955 -2.222 F35 9VI 36 9VI F51 F3 F 0 1 N N N -16.395 30.559 -16.786 6.791 -1.435 -0.890 F51 9VI 37 9VI F52 F4 F 0 1 N N N -16.621 29.720 -18.814 6.723 0.831 -0.605 F52 9VI 38 9VI F53 F5 F 0 1 N N N -14.601 30.061 -17.972 7.714 -0.489 0.974 F53 9VI 39 9VI N02 N1 N 0 1 Y N N -17.633 27.935 -9.959 -2.740 1.189 1.147 N02 9VI 40 9VI N03 N2 N 0 1 Y N N -18.618 28.789 -10.302 -2.418 2.546 1.254 N03 9VI 41 9VI N05 N3 N 0 1 N N N -21.130 28.709 -10.373 -2.120 4.436 -0.214 N05 9VI 42 9VI N16 N4 N 0 1 N N N -16.145 25.310 -8.955 -3.454 -1.495 -0.135 N16 9VI 43 9VI N23 N5 N 0 1 Y N N -11.878 24.913 -8.688 -3.811 -5.006 1.933 N23 9VI 44 9VI N25 N6 N 0 1 N N N -13.962 24.649 -9.972 -2.513 -3.435 0.777 N25 9VI 45 9VI N37 N7 N 0 1 N N N -15.270 24.705 -12.451 -0.023 -2.340 0.571 N37 9VI 46 9VI N41 N8 N 0 1 Y N N -15.344 26.606 -15.799 3.391 -1.269 1.474 N41 9VI 47 9VI N42 N9 N 0 1 Y N N -15.103 27.916 -16.021 4.486 -1.512 0.628 N42 9VI 48 9VI O08 O1 O 0 1 N N N -20.593 30.331 -12.330 -2.834 5.305 1.944 O08 9VI 49 9VI O09 O2 O 0 1 N N N -22.673 30.439 -11.466 -1.574 6.735 0.366 O09 9VI 50 9VI O18 O3 O 0 1 N N N -16.046 26.158 -6.918 -5.646 -1.079 0.087 O18 9VI 51 9VI O39 O4 O 0 1 N N N -16.743 26.098 -13.499 1.376 -0.767 -0.128 O39 9VI 52 9VI S06 S1 S 0 1 N N N -21.304 30.249 -11.059 -1.772 5.488 1.017 S06 9VI 53 9VI CL12 CL1 CL 0 0 N N N -22.153 26.078 -9.488 -2.596 3.494 -3.216 CL12 9VI 54 9VI H1 H1 H 0 1 N N N -20.561 23.757 -8.595 -3.253 0.865 -4.020 H1 9VI 55 9VI H2 H2 H 0 1 N N N -13.764 26.389 -5.676 -6.978 -2.897 1.389 H2 9VI 56 9VI H3 H3 H 0 1 N N N -11.270 26.103 -5.621 -7.069 -5.049 2.627 H3 9VI 57 9VI H4 H4 H 0 1 N N N -10.121 25.137 -7.598 -5.012 -6.355 2.943 H4 9VI 58 9VI H5 H5 H 0 1 N N N -16.819 22.607 -10.350 -0.730 -3.680 -1.599 H5 9VI 59 9VI H6 H6 H 0 1 N N N -15.391 22.374 -11.414 -1.589 -2.361 -2.431 H6 9VI 60 9VI H7 H7 H 0 1 N N N -16.162 29.385 -10.408 -1.884 -0.204 2.460 H7 9VI 61 9VI H8 H8 H 0 1 N N N -15.758 28.282 -9.049 -3.187 0.789 3.157 H8 9VI 62 9VI H9 H9 H 0 1 N N N -15.686 27.685 -10.742 -3.579 -0.523 2.020 H9 9VI 63 9VI H10 H10 H 0 1 N N N -21.320 31.475 -8.975 -0.350 3.856 2.070 H10 9VI 64 9VI H11 H11 H 0 1 N N N -19.690 31.462 -9.730 0.557 4.885 0.935 H11 9VI 65 9VI H12 H12 H 0 1 N N N -20.970 32.544 -10.376 0.096 5.515 2.535 H12 9VI 66 9VI H13 H13 H 0 1 N N N -18.084 23.492 -8.370 -3.610 -1.209 -2.751 H13 9VI 67 9VI H14 H14 H 0 1 N N N -17.093 24.892 -11.399 -1.006 -0.841 -0.517 H14 9VI 68 9VI H15 H15 H 0 1 N N N -15.651 22.137 -13.790 -0.371 -0.473 -3.352 H15 9VI 69 9VI H16 H16 H 0 1 N N N -19.529 21.274 -15.326 3.865 -0.833 -3.731 H16 9VI 70 9VI H17 H17 H 0 1 N N N -19.085 22.629 -11.297 1.685 -3.636 -1.363 H17 9VI 71 9VI H18 H18 H 0 1 N N N -14.319 24.895 -15.073 1.813 -2.029 2.627 H18 9VI 72 9VI H19 H19 H 0 1 N N N -13.837 26.450 -14.313 2.484 -3.160 1.427 H19 9VI 73 9VI H20 H20 H 0 1 N N N -16.894 24.164 -15.931 2.133 1.316 2.651 H20 9VI 74 9VI H21 H21 H 0 1 N N N -16.250 24.117 -17.607 2.194 -0.108 3.718 H21 9VI 75 9VI H22 H22 H 0 1 N N N -18.932 25.268 -16.667 3.151 2.074 4.673 H22 9VI 76 9VI H23 H23 H 0 1 N N N -18.669 23.828 -17.709 4.188 0.641 4.780 H23 9VI 77 9VI H24 H24 H 0 1 N N N -19.007 25.445 -19.545 5.172 3.025 3.771 H24 9VI 78 9VI H25 H25 H 0 1 N N N -17.689 27.757 -19.427 6.171 2.159 1.753 H25 9VI 79 9VI H26 H26 H 0 1 N N N -21.602 28.728 -9.492 -2.131 4.750 -1.132 H26 9VI 80 9VI H27 H27 H 0 1 N N N -14.352 24.311 -12.485 -0.197 -3.081 1.172 H27 9VI 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9VI F52 C50 SING N N 1 9VI C48 C49 DOUB N N 2 9VI C48 C47 SING N N 3 9VI C49 C44 SING N N 4 9VI F53 C50 SING N N 5 9VI C50 C43 SING N N 6 9VI C50 F51 SING N N 7 9VI C44 C43 SING Y N 8 9VI C44 C45 DOUB Y N 9 9VI C47 C46 SING N N 10 9VI C43 N42 DOUB Y N 11 9VI C46 C45 SING N N 12 9VI C45 N41 SING Y N 13 9VI N42 N41 SING Y N 14 9VI F32 C31 SING N N 15 9VI N41 C40 SING N N 16 9VI C31 C33 DOUB Y N 17 9VI C31 C30 SING Y N 18 9VI C40 C38 SING N N 19 9VI C33 C34 SING Y N 20 9VI C30 C29 DOUB Y N 21 9VI C38 O39 DOUB N N 22 9VI C38 N37 SING N N 23 9VI C34 F35 SING N N 24 9VI C34 C36 DOUB Y N 25 9VI N37 C27 SING N N 26 9VI C29 C36 SING Y N 27 9VI C29 C28 SING N N 28 9VI O08 S06 DOUB N N 29 9VI O09 S06 DOUB N N 30 9VI C27 C28 SING N N 31 9VI C27 C26 SING N N 32 9VI S06 N05 SING N N 33 9VI S06 C07 SING N N 34 9VI N05 C04 SING N N 35 9VI N03 C04 DOUB Y N 36 9VI N03 N02 SING Y N 37 9VI C04 C10 SING Y N 38 9VI C26 N25 DOUB N N 39 9VI C26 N16 SING N N 40 9VI C01 N02 SING N N 41 9VI N25 C24 SING N N 42 9VI N02 C54 SING Y N 43 9VI C10 C54 DOUB Y N 44 9VI C10 C11 SING Y N 45 9VI C54 C15 SING Y N 46 9VI CL12 C11 SING N N 47 9VI C11 C13 DOUB Y N 48 9VI C15 N16 SING N N 49 9VI C15 C14 DOUB Y N 50 9VI N16 C17 SING N N 51 9VI C13 C14 SING Y N 52 9VI C24 N23 DOUB Y N 53 9VI C24 C19 SING Y N 54 9VI N23 C22 SING Y N 55 9VI C17 C19 SING N N 56 9VI C17 O18 DOUB N N 57 9VI C19 C20 DOUB Y N 58 9VI C22 C21 DOUB Y N 59 9VI C20 C21 SING Y N 60 9VI C13 H1 SING N N 61 9VI C20 H2 SING N N 62 9VI C21 H3 SING N N 63 9VI C22 H4 SING N N 64 9VI C28 H5 SING N N 65 9VI C28 H6 SING N N 66 9VI C01 H7 SING N N 67 9VI C01 H8 SING N N 68 9VI C01 H9 SING N N 69 9VI C07 H10 SING N N 70 9VI C07 H11 SING N N 71 9VI C07 H12 SING N N 72 9VI C14 H13 SING N N 73 9VI C27 H14 SING N N 74 9VI C30 H15 SING N N 75 9VI C33 H16 SING N N 76 9VI C36 H17 SING N N 77 9VI C40 H18 SING N N 78 9VI C40 H19 SING N N 79 9VI C46 H20 SING N N 80 9VI C46 H21 SING N N 81 9VI C47 H22 SING N N 82 9VI C47 H23 SING N N 83 9VI C48 H24 SING N N 84 9VI C49 H25 SING N N 85 9VI N05 H26 SING N N 86 9VI N37 H27 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9VI SMILES ACDLabs 12.01 "CS(=O)(=O)Nc1nn(C)c2c1c(Cl)ccc2N1C(=O)c2cccnc2N=C1C(Cc1cc(F)cc(F)c1)NC(=O)Cn1nc(c2C=CCCc21)C(F)(F)F" 9VI InChI InChI 1.03 "InChI=1S/C34H27ClF5N9O4S/c1-47-28-25(10-9-22(35)27(28)31(45-47)46-54(2,52)53)49-32(43-30-21(33(49)51)7-5-11-41-30)23(14-17-12-18(36)15-19(37)13-17)42-26(50)16-48-24-8-4-3-6-20(24)29(44-48)34(38,39)40/h3,5-7,9-13,15,23H,4,8,14,16H2,1-2H3,(H,42,50)(H,45,46)/t23-/m0/s1" 9VI InChIKey InChI 1.03 ZBYBMYJJANJYNU-QHCPKHFHSA-N 9VI SMILES_CANONICAL CACTVS 3.385 "Cn1nc(N[S](C)(=O)=O)c2c(Cl)ccc(N3C(=O)c4cccnc4N=C3[C@H](Cc5cc(F)cc(F)c5)NC(=O)Cn6nc(c7C=CCCc67)C(F)(F)F)c12" 9VI SMILES CACTVS 3.385 "Cn1nc(N[S](C)(=O)=O)c2c(Cl)ccc(N3C(=O)c4cccnc4N=C3[CH](Cc5cc(F)cc(F)c5)NC(=O)Cn6nc(c7C=CCCc67)C(F)(F)F)c12" 9VI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2c(ccc(c2c(n1)NS(=O)(=O)C)Cl)N3C(=O)c4cccnc4N=C3[C@H](Cc5cc(cc(c5)F)F)NC(=O)Cn6c7c(c(n6)C(F)(F)F)C=CCC7" 9VI SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c2c(ccc(c2c(n1)NS(=O)(=O)C)Cl)N3C(=O)c4cccnc4N=C3C(Cc5cc(cc(c5)F)F)NC(=O)Cn6c7c(c(n6)C(F)(F)F)C=CCC7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9VI "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1S)-1-(3-{4-chloro-3-[(methanesulfonyl)amino]-1-methyl-1H-indazol-7-yl}-4-oxo-3,4-dihydropyrido[2,3-d]pyrimidin-2-yl)-2-(3,5-difluorophenyl)ethyl]-2-[3-(trifluoromethyl)-6,7-dihydro-1H-indazol-1-yl]acetamide" 9VI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-[3,5-bis(fluoranyl)phenyl]-1-[3-[4-chloranyl-1-methyl-3-(methylsulfonylamino)indazol-7-yl]-4-oxidanylidene-pyrido[2,3-d]pyrimidin-2-yl]ethyl]-2-[3-(trifluoromethyl)-6,7-dihydroindazol-1-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9VI "Create component" 2021-10-29 RCSB 9VI "Initial release" 2022-10-05 RCSB #