data_9VP # _chem_comp.id 9VP _chem_comp.name "5-acetamido-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H18 F N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-15 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 295.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9VP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W26 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9VP _pdbx_chem_comp_synonyms.name "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9VP O1B O1B O 0 1 N N N 22.159 19.989 64.524 -4.501 -0.755 -0.567 O1B 9VP 1 9VP C1 C1 C 0 1 N N N 23.301 20.130 63.985 -3.418 -0.116 -0.097 C1 9VP 2 9VP O1A O1A O 0 1 N N N 24.103 21.024 64.349 -3.542 0.742 0.745 O1A 9VP 3 9VP C2 C2 C 0 1 N N R 23.763 19.227 62.869 -2.049 -0.469 -0.619 C2 9VP 4 9VP C3 C3 C 0 1 N N R 23.121 17.870 63.071 -1.708 -1.909 -0.226 C3 9VP 5 9VP F1 F1 F 0 1 N N N 23.016 17.711 64.424 -1.772 -2.041 1.165 F1 9VP 6 9VP C4 C4 C 0 1 N N N 23.882 16.666 62.506 -0.292 -2.240 -0.708 C4 9VP 7 9VP O6 O6 O 0 1 N N N 25.141 19.113 63.177 -1.081 0.419 -0.056 O6 9VP 8 9VP C6 C6 C 0 1 N N R 25.881 18.166 62.401 0.255 0.187 -0.507 C6 9VP 9 9VP C7 C7 C 0 1 N N R 27.339 18.286 62.785 1.195 1.209 0.137 C7 9VP 10 9VP C8 C8 C 0 1 N N R 27.833 19.710 62.576 0.689 2.623 -0.157 C8 9VP 11 9VP C9 C9 C 0 1 N N N 29.307 19.835 62.979 1.629 3.645 0.486 C9 9VP 12 9VP O9 O9 O 0 1 N N N 30.161 19.581 61.856 1.096 4.959 0.311 O9 9VP 13 9VP O7 O7 O 0 1 N N N 27.477 17.987 64.171 1.230 1.000 1.550 O7 9VP 14 9VP C5 C5 C 0 1 N N R 25.392 16.745 62.636 0.688 -1.226 -0.109 C5 9VP 15 9VP N5 N5 N 0 1 N N N 25.910 15.985 61.499 2.036 -1.487 -0.622 N5 9VP 16 9VP C10 C10 C 0 1 N N N 26.955 15.167 61.541 2.819 -2.405 -0.021 C10 9VP 17 9VP O10 O10 O 0 1 N N N 27.615 14.942 62.552 2.409 -3.014 0.944 O10 9VP 18 9VP C11 C11 C 0 1 N N N 27.277 14.522 60.234 4.205 -2.673 -0.548 C11 9VP 19 9VP O8 O8 O 0 1 N N N 27.598 20.086 61.218 0.654 2.832 -1.571 O8 9VP 20 9VP H1 H1 H 0 1 N N N 22.046 20.644 65.203 -5.358 -0.495 -0.203 H1 9VP 21 9VP H2 H2 H 0 1 N N N 23.557 19.646 61.873 -2.039 -0.376 -1.705 H2 9VP 22 9VP H3 H3 H 0 1 N N N 22.123 17.889 62.610 -2.421 -2.591 -0.690 H3 9VP 23 9VP H4 H4 H 0 1 N N N 23.635 16.577 61.438 -0.022 -3.244 -0.382 H4 9VP 24 9VP H5 H5 H 0 1 N N N 23.540 15.766 63.038 -0.255 -2.185 -1.796 H5 9VP 25 9VP H6 H6 H 0 1 N N N 25.778 18.400 61.331 0.295 0.289 -1.591 H6 9VP 26 9VP H7 H7 H 0 1 N N N 27.939 17.596 62.174 2.197 1.089 -0.274 H7 9VP 27 9VP H8 H8 H 0 1 N N N 27.250 20.369 63.236 -0.313 2.743 0.253 H8 9VP 28 9VP H9 H9 H 0 1 N N N 29.528 19.106 63.773 1.725 3.430 1.550 H9 9VP 29 9VP H10 H10 H 0 1 N N N 29.494 20.852 63.353 2.609 3.585 0.013 H10 9VP 30 9VP H11 H11 H 0 1 N N N 31.069 19.663 62.123 1.641 5.659 0.695 H11 9VP 31 9VP H12 H12 H 0 1 N N N 28.390 18.060 64.422 0.370 1.092 1.982 H12 9VP 32 9VP H13 H13 H 0 1 N N N 25.739 16.350 63.602 0.687 -1.316 0.977 H13 9VP 33 9VP H14 H14 H 0 1 N N N 25.441 16.089 60.622 2.364 -1.000 -1.394 H14 9VP 34 9VP H15 H15 H 0 1 N N N 28.150 13.863 60.355 4.395 -2.036 -1.412 H15 9VP 35 9VP H16 H16 H 0 1 N N N 26.414 13.929 59.895 4.938 -2.459 0.230 H16 9VP 36 9VP H17 H17 H 0 1 N N N 27.504 15.298 59.488 4.285 -3.719 -0.844 H17 9VP 37 9VP H18 H18 H 0 1 N N N 27.903 20.975 61.078 1.514 2.740 -2.003 H18 9VP 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9VP C11 C10 SING N N 1 9VP O8 C8 SING N N 2 9VP N5 C10 SING N N 3 9VP N5 C5 SING N N 4 9VP C10 O10 DOUB N N 5 9VP O9 C9 SING N N 6 9VP C6 C5 SING N N 7 9VP C6 C7 SING N N 8 9VP C6 O6 SING N N 9 9VP C4 C5 SING N N 10 9VP C4 C3 SING N N 11 9VP C8 C7 SING N N 12 9VP C8 C9 SING N N 13 9VP C7 O7 SING N N 14 9VP C2 C3 SING N N 15 9VP C2 O6 SING N N 16 9VP C2 C1 SING N N 17 9VP C3 F1 SING N N 18 9VP C1 O1A DOUB N N 19 9VP C1 O1B SING N N 20 9VP O1B H1 SING N N 21 9VP C2 H2 SING N N 22 9VP C3 H3 SING N N 23 9VP C4 H4 SING N N 24 9VP C4 H5 SING N N 25 9VP C6 H6 SING N N 26 9VP C7 H7 SING N N 27 9VP C8 H8 SING N N 28 9VP C9 H9 SING N N 29 9VP C9 H10 SING N N 30 9VP O9 H11 SING N N 31 9VP O7 H12 SING N N 32 9VP C5 H13 SING N N 33 9VP N5 H14 SING N N 34 9VP C11 H15 SING N N 35 9VP C11 H16 SING N N 36 9VP C11 H17 SING N N 37 9VP O8 H18 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9VP SMILES ACDLabs 12.01 "OC(=O)C1C(F)CC(C(O1)C(O)C(CO)O)NC(=O)C" 9VP InChI InChI 1.03 "InChI=1S/C11H18FNO7/c1-4(15)13-6-2-5(12)9(11(18)19)20-10(6)8(17)7(16)3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8-,9+,10-/m1/s1" 9VP InChIKey InChI 1.03 AUOXJUOLLXNWIV-MMDZMLKVSA-N 9VP SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1C[C@@H](F)[C@H](O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O" 9VP SMILES CACTVS 3.385 "CC(=O)N[CH]1C[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)C(O)=O" 9VP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1C[C@H]([C@H](O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)F" 9VP SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1CC(C(OC1C(C(CO)O)O)C(=O)O)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9VP "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid" 9VP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},5~{R},6~{R})-5-acetamido-3-fluoranyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 9VP "CARBOHYDRATE ISOMER" D PDB ? 9VP "CARBOHYDRATE RING" pyranose PDB ? 9VP "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9VP "Create component" 2017-06-15 RCSB 9VP "Initial release" 2018-02-21 RCSB 9VP "Other modification" 2020-07-03 RCSB 9VP "Modify name" 2020-07-17 RCSB 9VP "Modify synonyms" 2020-07-17 RCSB 9VP "Modify internal type" 2020-07-17 RCSB 9VP "Modify linking type" 2020-07-17 RCSB ##