data_9VW # _chem_comp.id 9VW _chem_comp.name "1-cyclohexyl-3-(pyridin-3-ylmethyl)urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-19 _chem_comp.pdbx_modified_date 2018-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 233.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9VW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OIL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9VW C13 C1 C 0 1 Y N N 35.953 48.758 -77.377 5.669 0.317 -0.801 C13 9VW 1 9VW C20 C2 C 0 1 N N N 42.126 52.307 -81.706 -2.816 0.267 0.113 C20 9VW 2 9VW C22 C3 C 0 1 N N N 41.668 53.738 -81.435 -3.648 1.419 -0.453 C22 9VW 3 9VW C28 C4 C 0 1 N N N 43.999 54.578 -81.852 -5.631 -0.092 -0.616 C28 9VW 4 9VW O01 O1 O 0 1 N N N 39.922 50.711 -82.580 -0.720 -0.748 1.473 O01 9VW 5 9VW C02 C5 C 0 1 N N N 40.268 50.687 -81.392 -0.436 -0.106 0.481 C02 9VW 6 9VW N03 N1 N 0 1 N N N 39.654 49.934 -80.452 0.855 0.058 0.130 N03 9VW 7 9VW C05 C6 C 0 1 N N N 38.528 49.060 -80.736 1.916 -0.540 0.944 C05 9VW 8 9VW C08 C7 C 0 1 Y N N 37.585 48.958 -79.565 3.257 -0.212 0.340 C08 9VW 9 9VW C09 C8 C 0 1 Y N N 36.390 49.663 -79.527 3.936 0.936 0.719 C09 9VW 10 9VW C11 C9 C 0 1 Y N N 35.556 49.561 -78.427 5.167 1.198 0.138 C11 9VW 11 9VW N15 N2 N 0 1 Y N N 37.114 48.076 -77.368 4.991 -0.761 -1.145 N15 9VW 12 9VW C16 C10 C 0 1 Y N N 37.904 48.198 -78.448 3.820 -1.044 -0.609 C16 9VW 13 9VW N18 N3 N 0 1 N N N 41.328 51.376 -80.912 -1.413 0.444 -0.269 N18 9VW 14 9VW C25 C11 C 0 1 N N N 42.527 54.748 -82.187 -5.114 1.234 -0.055 C25 9VW 15 9VW C31 C12 C 0 1 N N N 44.460 53.160 -82.130 -4.799 -1.244 -0.050 C31 9VW 16 9VW C34 C13 C 0 1 N N N 43.601 52.138 -81.381 -3.333 -1.059 -0.449 C34 9VW 17 9VW H1 H1 H 0 1 N N N 35.300 48.672 -76.521 6.625 0.515 -1.262 H1 9VW 18 9VW H2 H2 H 0 1 N N N 41.978 52.092 -82.774 -2.899 0.258 1.199 H2 9VW 19 9VW H3 H3 H 0 1 N N N 41.741 53.939 -80.356 -3.279 2.364 -0.053 H3 9VW 20 9VW H4 H4 H 0 1 N N N 40.622 53.846 -81.758 -3.565 1.428 -1.540 H4 9VW 21 9VW H5 H5 H 0 1 N N N 44.590 55.275 -82.464 -6.675 -0.224 -0.333 H5 9VW 22 9VW H6 H6 H 0 1 N N N 44.154 54.804 -80.787 -5.548 -0.083 -1.703 H6 9VW 23 9VW H7 H7 H 0 1 N N N 39.992 49.981 -79.512 1.081 0.570 -0.662 H7 9VW 24 9VW H8 H8 H 0 1 N N N 37.978 49.459 -81.601 1.866 -0.140 1.957 H8 9VW 25 9VW H9 H9 H 0 1 N N N 38.909 48.056 -80.974 1.786 -1.622 0.974 H9 9VW 26 9VW H10 H10 H 0 1 N N N 36.110 50.293 -80.358 3.515 1.611 1.450 H10 9VW 27 9VW H11 H11 H 0 1 N N N 34.619 50.096 -78.391 5.727 2.079 0.415 H11 9VW 28 9VW H12 H12 H 0 1 N N N 38.847 47.671 -78.447 3.298 -1.940 -0.910 H12 9VW 29 9VW H13 H13 H 0 1 N N N 41.581 51.240 -79.954 -1.186 0.957 -1.060 H13 9VW 30 9VW H14 H14 H 0 1 N N N 42.211 55.764 -81.909 -5.196 1.226 1.032 H14 9VW 31 9VW H15 H15 H 0 1 N N N 42.387 54.603 -83.268 -5.706 2.055 -0.458 H15 9VW 32 9VW H16 H16 H 0 1 N N N 44.388 52.965 -83.210 -4.882 -1.253 1.036 H16 9VW 33 9VW H17 H17 H 0 1 N N N 45.506 53.054 -81.807 -5.168 -2.189 -0.450 H17 9VW 34 9VW H18 H18 H 0 1 N N N 43.917 51.125 -81.670 -3.251 -1.051 -1.535 H18 9VW 35 9VW H19 H19 H 0 1 N N N 43.747 52.273 -80.299 -2.741 -1.880 -0.045 H19 9VW 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9VW O01 C02 DOUB N N 1 9VW C25 C28 SING N N 2 9VW C25 C22 SING N N 3 9VW C31 C28 SING N N 4 9VW C31 C34 SING N N 5 9VW C20 C22 SING N N 6 9VW C20 C34 SING N N 7 9VW C20 N18 SING N N 8 9VW C02 N18 SING N N 9 9VW C02 N03 SING N N 10 9VW C05 N03 SING N N 11 9VW C05 C08 SING N N 12 9VW C08 C09 DOUB Y N 13 9VW C08 C16 SING Y N 14 9VW C09 C11 SING Y N 15 9VW C16 N15 DOUB Y N 16 9VW C11 C13 DOUB Y N 17 9VW C13 N15 SING Y N 18 9VW C13 H1 SING N N 19 9VW C20 H2 SING N N 20 9VW C22 H3 SING N N 21 9VW C22 H4 SING N N 22 9VW C28 H5 SING N N 23 9VW C28 H6 SING N N 24 9VW N03 H7 SING N N 25 9VW C05 H8 SING N N 26 9VW C05 H9 SING N N 27 9VW C09 H10 SING N N 28 9VW C11 H11 SING N N 29 9VW C16 H12 SING N N 30 9VW N18 H13 SING N N 31 9VW C25 H14 SING N N 32 9VW C25 H15 SING N N 33 9VW C31 H16 SING N N 34 9VW C31 H17 SING N N 35 9VW C34 H18 SING N N 36 9VW C34 H19 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9VW InChI InChI 1.03 "InChI=1S/C13H19N3O/c17-13(16-12-6-2-1-3-7-12)15-10-11-5-4-8-14-9-11/h4-5,8-9,12H,1-3,6-7,10H2,(H2,15,16,17)" 9VW InChIKey InChI 1.03 XXSTXXTVGPRZSU-UHFFFAOYSA-N 9VW SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccnc1)NC2CCCCC2" 9VW SMILES CACTVS 3.385 "O=C(NCc1cccnc1)NC2CCCCC2" 9VW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)NC2CCCCC2" 9VW SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)NC2CCCCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9VW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-cyclohexyl-3-(pyridin-3-ylmethyl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9VW "Create component" 2017-07-19 EBI 9VW "Initial release" 2018-02-14 RCSB #