data_9WE # _chem_comp.id 9WE _chem_comp.name "1-(pyridin-3-ylmethyl)-3-(1-pyrimidin-2-ylpiperidin-4-yl)urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-19 _chem_comp.pdbx_modified_date 2018-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 312.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9WE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OIP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9WE C10 C1 C 0 1 Y N N 38.814 49.009 -79.034 -4.624 -1.329 -0.974 C10 9WE 1 9WE C13 C2 C 0 1 N N N 44.263 53.439 -82.084 1.660 2.106 -1.195 C13 9WE 2 9WE C17 C3 C 0 1 N N N 42.091 54.646 -82.377 1.987 2.314 1.271 C17 9WE 3 9WE C20 C4 C 0 1 Y N N 46.106 57.472 -80.256 4.353 -2.576 -0.951 C20 9WE 4 9WE C21 C5 C 0 1 Y N N 45.450 58.678 -80.134 5.333 -2.816 0.000 C21 9WE 5 9WE C22 C6 C 0 1 Y N N 44.350 58.848 -80.949 5.595 -1.835 0.943 C22 9WE 6 9WE O01 O1 O 0 1 N N N 40.668 51.573 -83.189 -1.545 2.614 -0.833 O01 9WE 7 9WE C02 C7 C 0 1 N N N 41.066 51.572 -82.021 -1.324 1.620 -0.169 C02 9WE 8 9WE N03 N1 N 0 1 N N N 40.514 50.779 -81.067 -2.303 0.717 0.037 N03 9WE 9 9WE C04 C8 C 0 1 N N N 39.396 49.876 -81.333 -3.633 0.933 -0.539 C04 9WE 10 9WE C05 C9 C 0 1 Y N N 38.457 49.733 -80.159 -4.536 -0.213 -0.163 C05 9WE 11 9WE C06 C10 C 0 1 Y N N 37.204 50.327 -80.150 -5.289 -0.162 1.000 C06 9WE 12 9WE C07 C11 C 0 1 Y N N 36.370 50.177 -79.054 -6.106 -1.239 1.305 C07 9WE 13 9WE C08 C12 C 0 1 Y N N 36.824 49.433 -77.987 -6.143 -2.321 0.446 C08 9WE 14 9WE N09 N2 N 0 1 Y N N 38.035 48.861 -77.953 -5.413 -2.336 -0.652 N09 9WE 15 9WE N11 N3 N 0 1 N N N 42.121 52.319 -81.607 -0.101 1.420 0.360 N11 9WE 16 9WE C12 C13 C 0 1 N N N 42.799 53.301 -82.467 0.963 2.402 0.136 C12 9WE 17 9WE C14 C14 C 0 1 N N N 44.929 54.539 -82.905 2.311 0.723 -1.128 C14 9WE 18 9WE N15 N4 N 0 1 N N N 44.227 55.823 -82.734 3.283 0.690 -0.028 N15 9WE 19 9WE C16 C15 C 0 1 N N N 42.837 55.701 -83.186 2.629 0.924 1.266 C16 9WE 20 9WE C18 C16 C 0 1 Y N N 44.632 56.781 -81.851 3.984 -0.503 -0.021 C18 9WE 21 9WE N19 N5 N 0 1 Y N N 45.716 56.497 -81.095 3.706 -1.423 -0.933 N19 9WE 22 9WE N23 N6 N 0 1 Y N N 43.923 57.922 -81.827 4.907 -0.705 0.908 N23 9WE 23 9WE H30 H1 H 0 1 N N N 39.783 48.532 -79.027 -4.045 -1.375 -1.884 H30 9WE 24 9WE H34 H2 H 0 1 N N N 44.778 52.485 -82.272 0.928 2.125 -2.001 H34 9WE 25 9WE H33 H3 H 0 1 N N N 44.335 53.691 -81.016 2.425 2.860 -1.380 H33 9WE 26 9WE H40 H4 H 0 1 N N N 42.048 54.962 -81.324 2.758 3.071 1.124 H40 9WE 27 9WE H39 H5 H 0 1 N N N 41.069 54.544 -82.772 1.489 2.483 2.225 H39 9WE 28 9WE H41 H6 H 0 1 N N N 46.980 57.301 -79.645 4.124 -3.320 -1.699 H41 9WE 29 9WE H42 H7 H 0 1 N N N 45.777 59.442 -79.444 5.879 -3.747 0.006 H42 9WE 30 9WE H43 H8 H 0 1 N N N 43.801 59.776 -80.878 6.352 -1.990 1.698 H43 9WE 31 9WE H24 H9 H 0 1 N N N 40.889 50.814 -80.141 -2.128 -0.077 0.566 H24 9WE 32 9WE H25 H10 H 0 1 N N N 38.828 50.266 -82.190 -4.048 1.865 -0.154 H25 9WE 33 9WE H26 H11 H 0 1 N N N 39.799 48.883 -81.581 -3.554 0.993 -1.624 H26 9WE 34 9WE H27 H12 H 0 1 N N N 36.877 50.908 -81.000 -5.240 0.697 1.653 H27 9WE 35 9WE H28 H13 H 0 1 N N N 35.390 50.631 -79.036 -6.706 -1.234 2.203 H28 9WE 36 9WE H29 H14 H 0 1 N N N 36.171 49.305 -77.136 -6.777 -3.165 0.677 H29 9WE 37 9WE H31 H15 H 0 1 N N N 42.453 52.196 -80.672 0.075 0.627 0.890 H31 9WE 38 9WE H32 H16 H 0 1 N N N 42.748 52.955 -83.510 0.535 3.404 0.108 H32 9WE 39 9WE H35 H17 H 0 1 N N N 44.909 54.257 -83.968 1.544 -0.032 -0.957 H35 9WE 40 9WE H36 H18 H 0 1 N N N 45.972 54.653 -82.575 2.821 0.516 -2.069 H36 9WE 41 9WE H38 H19 H 0 1 N N N 42.333 56.671 -83.064 3.369 0.863 2.063 H38 9WE 42 9WE H37 H20 H 0 1 N N N 42.828 55.413 -84.248 1.860 0.168 1.425 H37 9WE 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9WE O01 C02 DOUB N N 1 9WE C16 N15 SING N N 2 9WE C16 C17 SING N N 3 9WE C14 N15 SING N N 4 9WE C14 C13 SING N N 5 9WE N15 C18 SING N N 6 9WE C12 C17 SING N N 7 9WE C12 C13 SING N N 8 9WE C12 N11 SING N N 9 9WE C02 N11 SING N N 10 9WE C02 N03 SING N N 11 9WE C18 N23 DOUB Y N 12 9WE C18 N19 SING Y N 13 9WE N23 C22 SING Y N 14 9WE C04 N03 SING N N 15 9WE C04 C05 SING N N 16 9WE N19 C20 DOUB Y N 17 9WE C22 C21 DOUB Y N 18 9WE C20 C21 SING Y N 19 9WE C05 C06 DOUB Y N 20 9WE C05 C10 SING Y N 21 9WE C06 C07 SING Y N 22 9WE C07 C08 DOUB Y N 23 9WE C10 N09 DOUB Y N 24 9WE C08 N09 SING Y N 25 9WE C10 H30 SING N N 26 9WE C13 H34 SING N N 27 9WE C13 H33 SING N N 28 9WE C17 H40 SING N N 29 9WE C17 H39 SING N N 30 9WE C20 H41 SING N N 31 9WE C21 H42 SING N N 32 9WE C22 H43 SING N N 33 9WE N03 H24 SING N N 34 9WE C04 H25 SING N N 35 9WE C04 H26 SING N N 36 9WE C06 H27 SING N N 37 9WE C07 H28 SING N N 38 9WE C08 H29 SING N N 39 9WE N11 H31 SING N N 40 9WE C12 H32 SING N N 41 9WE C14 H35 SING N N 42 9WE C14 H36 SING N N 43 9WE C16 H38 SING N N 44 9WE C16 H37 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9WE InChI InChI 1.03 "InChI=1S/C16H20N6O/c23-16(20-12-13-3-1-6-17-11-13)21-14-4-9-22(10-5-14)15-18-7-2-8-19-15/h1-3,6-8,11,14H,4-5,9-10,12H2,(H2,20,21,23)" 9WE InChIKey InChI 1.03 GHIMGULMAMLLAJ-UHFFFAOYSA-N 9WE SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccnc1)NC2CCN(CC2)c3ncccn3" 9WE SMILES CACTVS 3.385 "O=C(NCc1cccnc1)NC2CCN(CC2)c3ncccn3" 9WE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)NC2CCN(CC2)c3ncccn3" 9WE SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)NC2CCN(CC2)c3ncccn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9WE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-(pyridin-3-ylmethyl)-3-(1-pyrimidin-2-ylpiperidin-4-yl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9WE "Create component" 2017-07-19 EBI 9WE "Initial release" 2018-02-14 RCSB #