data_9WJ # _chem_comp.id 9WJ _chem_comp.name "4-acetamido-4,6-dideoxy-beta-D-mannopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose; 4-(acetylamino)-4-deoxy-beta-D-rhamnopyranose; 4-acetamido-4,6-dideoxy-beta-D-mannose; 4-acetamido-4,6-dideoxy-D-mannose; 4-acetamido-4,6-dideoxy-mannose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 205.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9WJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W6S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 9WJ "4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose" PDB ? 2 9WJ "4-(acetylamino)-4-deoxy-beta-D-rhamnopyranose" PDB ? 3 9WJ "4-acetamido-4,6-dideoxy-beta-D-mannose" PDB ? 4 9WJ "4-acetamido-4,6-dideoxy-D-mannose" PDB ? 5 9WJ "4-acetamido-4,6-dideoxy-mannose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9WJ O3 O3 O 0 1 N N N -19.806 -43.780 -4.364 0.170 -2.538 -0.084 O3 9WJ 1 9WJ C3 C3 C 0 1 N N S -20.232 -42.775 -5.283 0.553 -1.251 -0.573 C3 9WJ 2 9WJ C4 C4 C 0 1 N N S -21.302 -43.303 -6.249 -0.415 -0.191 -0.038 C4 9WJ 3 9WJ C7 C7 C 0 1 N N N -21.248 -45.359 -7.429 -2.839 -0.016 0.131 C7 9WJ 4 9WJ O7 O7 O 0 1 N N N -22.272 -45.680 -6.843 -2.694 0.598 1.166 O7 9WJ 5 9WJ C8 C8 C 0 1 N N N -20.542 -46.256 -8.402 -4.225 -0.288 -0.396 C8 9WJ 6 9WJ C6 C6 C 0 1 N N N -23.263 -42.763 -7.809 -0.879 2.262 0.078 C6 9WJ 7 9WJ C5 C5 C 0 1 N N R -22.090 -42.217 -7.000 0.048 1.192 -0.502 C5 9WJ 8 9WJ O5 O5 O 0 1 N N N -22.522 -41.215 -6.083 1.384 1.423 -0.049 O5 9WJ 9 9WJ C1 C1 C 0 1 N N R -21.273 -40.692 -5.615 2.341 0.490 -0.556 C1 9WJ 10 9WJ C2 C2 C 0 1 N N S -20.833 -41.643 -4.489 1.970 -0.921 -0.094 C2 9WJ 11 9WJ O2 O2 O 0 1 N N N -21.913 -42.247 -3.753 2.018 -0.985 1.333 O2 9WJ 12 9WJ N4 N4 N 0 1 N N N -20.695 -44.175 -7.223 -1.762 -0.455 -0.550 N4 9WJ 13 9WJ O1 O1 O 0 1 N Y N -21.352 -39.350 -5.115 3.640 0.826 -0.065 O1 9WJ 14 9WJ HO3 H1 H 0 1 N Y N -19.146 -43.420 -3.783 0.745 -3.258 -0.379 HO3 9WJ 15 9WJ H3 H2 H 0 1 N N N -19.378 -42.399 -5.865 0.527 -1.253 -1.663 H3 9WJ 16 9WJ H4 H3 H 0 1 N N N -22.024 -43.885 -5.657 -0.426 -0.225 1.051 H4 9WJ 17 9WJ H4A H4 H 0 1 N N N -21.088 -47.207 -8.487 -4.156 -0.847 -1.329 H4A 9WJ 18 9WJ H5A H5 H 0 1 N N N -20.501 -45.768 -9.387 -4.784 -0.870 0.336 H5A 9WJ 19 9WJ H6 H6 H 0 1 N N N -19.520 -46.450 -8.046 -4.737 0.658 -0.576 H6 9WJ 20 9WJ H61 H7 H 0 1 N N N -23.777 -41.933 -8.316 -0.851 2.216 1.167 H61 9WJ 21 9WJ H62 H8 H 0 1 N N N -22.891 -43.477 -8.559 -0.549 3.247 -0.253 H62 9WJ 22 9WJ H9 H9 H 0 1 N N N -23.967 -43.273 -7.135 -1.898 2.085 -0.267 H9 9WJ 23 9WJ H5 H10 H 0 1 N N N -21.394 -41.753 -7.715 0.020 1.238 -1.591 H5 9WJ 24 9WJ H1 H11 H 0 1 N N N -20.526 -40.743 -6.421 2.343 0.527 -1.645 H1 9WJ 25 9WJ H2 H12 H 0 1 N N N -20.088 -41.166 -3.835 2.673 -1.639 -0.516 H2 9WJ 26 9WJ HO2 H13 H 0 1 N Y N -21.559 -42.816 -3.080 2.888 -0.787 1.706 HO2 9WJ 27 9WJ H14 H14 H 0 1 N N N -19.879 -43.893 -7.728 -1.879 -0.946 -1.378 H14 9WJ 28 9WJ HO1 H15 H 0 1 N Y N -20.493 -39.069 -4.823 3.940 1.710 -0.319 HO1 9WJ 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9WJ C8 C7 SING N N 1 9WJ C6 C5 SING N N 2 9WJ C7 N4 SING N N 3 9WJ C7 O7 DOUB N N 4 9WJ N4 C4 SING N N 5 9WJ C5 C4 SING N N 6 9WJ C5 O5 SING N N 7 9WJ C4 C3 SING N N 8 9WJ O5 C1 SING N N 9 9WJ C1 C2 SING N N 10 9WJ C3 C2 SING N N 11 9WJ C3 O3 SING N N 12 9WJ C2 O2 SING N N 13 9WJ C1 O1 SING N N 14 9WJ O3 HO3 SING N N 15 9WJ C3 H3 SING N N 16 9WJ C4 H4 SING N N 17 9WJ C8 H4A SING N N 18 9WJ C8 H5A SING N N 19 9WJ C8 H6 SING N N 20 9WJ C6 H61 SING N N 21 9WJ C6 H62 SING N N 22 9WJ C6 H9 SING N N 23 9WJ C5 H5 SING N N 24 9WJ C1 H1 SING N N 25 9WJ C2 H2 SING N N 26 9WJ O2 HO2 SING N N 27 9WJ N4 H14 SING N N 28 9WJ O1 HO1 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9WJ SMILES ACDLabs 12.01 "OC1C(C(OC(C1NC(=O)C)C)O)O" 9WJ InChI InChI 1.03 "InChI=1S/C8H15NO5/c1-3-5(9-4(2)10)6(11)7(12)8(13)14-3/h3,5-8,11-13H,1-2H3,(H,9,10)/t3-,5-,6+,7+,8-/m1/s1" 9WJ InChIKey InChI 1.03 LMIZXKMXHCOVTQ-NDBSEGGWSA-N 9WJ SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1NC(C)=O" 9WJ SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1NC(C)=O" 9WJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)NC(=O)C" 9WJ SMILES "OpenEye OEToolkits" 2.0.6 "CC1C(C(C(C(O1)O)O)O)NC(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9WJ "SYSTEMATIC NAME" ACDLabs 12.01 "4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose" 9WJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(2~{R},3~{S},4~{S},5~{S},6~{R})-2-methyl-4,5,6-tris(oxidanyl)oxan-3-yl]ethanamide" 9WJ "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DRhap[4NAc]b # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 9WJ "CARBOHYDRATE ISOMER" D PDB ? 9WJ "CARBOHYDRATE RING" pyranose PDB ? 9WJ "CARBOHYDRATE ANOMER" beta PDB ? 9WJ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9WJ "Create component" 2017-06-19 RCSB 9WJ "Initial release" 2018-10-24 RCSB 9WJ "Other modification" 2020-07-03 RCSB 9WJ "Modify name" 2020-07-17 RCSB 9WJ "Modify synonyms" 2020-07-17 RCSB 9WJ "Modify internal type" 2020-07-17 RCSB 9WJ "Modify linking type" 2020-07-17 RCSB 9WJ "Modify atom id" 2020-07-17 RCSB 9WJ "Modify component atom id" 2020-07-17 RCSB 9WJ "Modify leaving atom flag" 2020-07-17 RCSB ##