data_9XB # _chem_comp.id 9XB _chem_comp.name "Pamamycin 607" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H61 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-24 _chem_comp.pdbx_modified_date 2018-04-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 607.861 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9XB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OJY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9XB C13 C1 C 0 1 N N N 16.189 -52.904 -11.086 -4.970 0.745 1.014 C13 9XB 1 9XB C15 C2 C 0 1 N N N 18.985 -49.560 -11.567 -2.227 4.246 0.777 C15 9XB 2 9XB C20 C3 C 0 1 N N S 16.074 -46.470 -13.861 0.199 1.369 3.325 C20 9XB 3 9XB C21 C4 C 0 1 N N N 15.001 -46.545 -14.942 -1.071 1.406 4.182 C21 9XB 4 9XB C22 C5 C 0 1 N N R 16.108 -45.140 -13.123 1.033 0.152 3.671 C22 9XB 5 9XB C24 C6 C 0 1 N N S 14.631 -43.531 -12.442 2.685 -1.277 2.972 C24 9XB 6 9XB C26 C7 C 0 1 N N N 16.439 -43.941 -13.993 0.297 -1.177 3.429 C26 9XB 7 9XB C28 C8 C 0 1 N N S 12.269 -44.173 -11.912 2.857 -1.737 0.494 C28 9XB 8 9XB C01 C9 C 0 1 N N N 10.817 -52.833 -10.054 -1.995 -3.922 -0.685 C01 9XB 9 9XB C02 C10 C 0 1 N N N 9.523 -52.739 -9.187 -1.660 -4.958 0.390 C02 9XB 10 9XB C03 C11 C 0 1 N N N 11.430 -51.397 -10.132 -3.129 -3.022 -0.191 C03 9XB 11 9XB C04 C12 C 0 1 N N R 12.619 -51.320 -11.139 -3.463 -1.986 -1.267 C04 9XB 12 9XB C06 C13 C 0 1 N N N 12.017 -49.315 -12.298 -5.343 -3.196 -2.197 C06 9XB 13 9XB C07 C14 C 0 1 N N N 13.055 -49.072 -10.155 -3.995 -1.773 -3.619 C07 9XB 14 9XB C08 C15 C 0 1 N N N 13.820 -52.115 -10.588 -4.509 -1.009 -0.726 C08 9XB 15 9XB C09 C16 C 0 1 N N S 14.993 -52.156 -11.586 -3.909 -0.209 0.432 C09 9XB 16 9XB C11 C17 C 0 1 N N R 16.880 -50.850 -12.061 -2.834 1.823 0.732 C11 9XB 17 9XB C12 C18 C 0 1 N N N 17.313 -52.294 -11.861 -4.343 2.152 0.864 C12 9XB 18 9XB C14 C19 C 0 1 N N R 17.581 -49.896 -11.056 -2.100 2.941 -0.011 C14 9XB 19 9XB C16 C20 C 0 1 N N S 16.740 -48.628 -10.806 -0.614 2.571 -0.154 C16 9XB 20 9XB C18 C21 C 0 1 N N N 15.840 -47.552 -12.802 -0.174 1.403 1.872 C18 9XB 21 9XB C25 C22 C 0 1 N N N 15.576 -42.858 -13.428 1.418 -2.154 3.007 C25 9XB 22 9XB C27 C23 C 0 1 N N N 13.163 -43.152 -12.662 3.606 -1.642 1.826 C27 9XB 23 9XB C30 C24 C 0 1 N N N 12.563 -45.429 -9.933 2.675 -0.456 -1.520 C30 9XB 24 9XB C32 C25 C 0 1 N N R 13.314 -45.569 -8.608 3.191 0.592 -2.479 C32 9XB 25 9XB C33 C26 C 0 1 N N N 12.850 -44.539 -7.571 4.626 0.241 -2.872 C33 9XB 26 9XB C34 C27 C 0 1 N N R 14.786 -45.345 -8.921 3.164 1.943 -1.770 C34 9XB 27 9XB C36 C28 C 0 1 N N S 16.676 -46.494 -9.556 1.583 3.454 -0.958 C36 9XB 28 9XB C37 C29 C 0 1 N N N 16.997 -45.680 -8.307 2.324 4.193 -2.081 C37 9XB 29 9XB C38 C30 C 0 1 N N N 15.675 -45.299 -7.730 3.161 3.101 -2.779 C38 9XB 30 9XB C39 C31 C 0 1 N N R 17.187 -47.919 -9.512 0.073 3.609 -1.045 C39 9XB 31 9XB C40 C32 C 0 1 N N N 16.647 -48.617 -8.247 -0.428 3.411 -2.476 C40 9XB 32 9XB C41 C33 C 0 1 N N N 10.772 -43.775 -11.869 3.048 -3.143 -0.086 C41 9XB 33 9XB C42 C34 C 0 1 N N N 10.235 -43.586 -13.311 4.538 -3.402 -0.317 C42 9XB 34 9XB C43 C35 C 0 1 N N N 10.374 -44.880 -14.178 4.719 -4.752 -1.013 C43 9XB 35 9XB N05 N1 N 0 1 N N N 13.019 -49.904 -11.387 -3.996 -2.667 -2.454 N05 9XB 36 9XB O10 O1 O 0 1 N N N 15.429 -50.813 -11.888 -2.822 0.601 -0.045 O10 9XB 37 9XB O17 O2 O 0 1 N N N 16.886 -47.722 -11.892 -0.010 2.541 1.166 O17 9XB 38 9XB O19 O3 O 0 1 N N N 14.830 -48.177 -12.720 -0.623 0.433 1.308 O19 9XB 39 9XB O23 O4 O 0 1 N N N 14.770 -44.964 -12.662 2.220 0.078 2.865 O23 9XB 40 9XB O29 O5 O 0 1 N N N 12.715 -44.211 -10.599 3.398 -0.763 -0.433 O29 9XB 41 9XB O31 O6 O 0 1 N N N 11.870 -46.282 -10.430 1.617 -0.993 -1.742 O31 9XB 42 9XB O35 O7 O 0 1 N N N 15.238 -46.491 -9.685 1.948 2.069 -1.011 O35 9XB 43 9XB H132 H1 H 0 0 N N N 16.100 -53.980 -11.298 -5.898 0.678 0.445 H132 9XB 44 9XB H131 H2 H 0 0 N N N 16.326 -52.754 -10.005 -5.152 0.518 2.065 H131 9XB 45 9XB H151 H3 H 0 0 N N N 19.483 -48.884 -10.856 -1.704 5.042 0.248 H151 9XB 46 9XB H152 H4 H 0 0 N N N 19.571 -50.486 -11.664 -3.280 4.508 0.878 H152 9XB 47 9XB H153 H5 H 0 0 N N N 18.910 -49.069 -12.548 -1.788 4.117 1.766 H153 9XB 48 9XB H201 H6 H 0 0 N N N 17.056 -46.641 -14.326 0.780 2.279 3.556 H201 9XB 49 9XB H213 H7 H 0 0 N N N 15.038 -47.531 -15.429 -0.797 1.451 5.236 H213 9XB 50 9XB H211 H8 H 0 0 N N N 14.011 -46.398 -14.486 -1.659 2.286 3.922 H211 9XB 51 9XB H212 H9 H 0 0 N N N 15.180 -45.760 -15.691 -1.660 0.508 3.998 H212 9XB 52 9XB H221 H10 H 0 0 N N N 16.814 -45.198 -12.282 1.341 0.196 4.726 H221 9XB 53 9XB H241 H11 H 0 0 N N N 14.925 -43.270 -11.415 3.208 -1.388 3.925 H241 9XB 54 9XB H262 H12 H 0 0 N N N 16.187 -44.137 -15.046 -0.177 -1.527 4.351 H262 9XB 55 9XB H261 H13 H 0 0 N N N 17.504 -43.678 -13.913 -0.429 -1.087 2.633 H261 9XB 56 9XB H281 H14 H 0 0 N N N 12.365 -45.156 -12.396 1.798 -1.539 0.660 H281 9XB 57 9XB H011 H15 H 0 0 N N N 10.568 -53.191 -11.064 -1.113 -3.315 -0.892 H011 9XB 58 9XB H012 H16 H 0 0 N N N 11.534 -53.523 -9.586 -2.306 -4.432 -1.597 H012 9XB 59 9XB H021 H17 H 0 0 N N N 9.061 -53.734 -9.108 -2.542 -5.565 0.596 H021 9XB 60 9XB H023 H18 H 0 0 N N N 9.781 -52.374 -8.182 -0.852 -5.599 0.038 H023 9XB 61 9XB H022 H19 H 0 0 N N N 8.815 -52.042 -9.659 -1.349 -4.448 1.302 H022 9XB 62 9XB H031 H20 H 0 0 N N N 11.792 -51.111 -9.133 -4.010 -3.629 0.015 H031 9XB 63 9XB H032 H21 H 0 0 N N N 10.647 -50.694 -10.453 -2.817 -2.512 0.720 H032 9XB 64 9XB H041 H22 H 0 0 N N N 12.301 -51.778 -12.087 -2.560 -1.439 -1.537 H041 9XB 65 9XB H062 H23 H 0 0 N N N 12.280 -48.267 -12.505 -6.011 -2.376 -1.935 H062 9XB 66 9XB H063 H24 H 0 0 N N N 12.001 -49.882 -13.241 -5.714 -3.695 -3.092 H063 9XB 67 9XB H061 H25 H 0 0 N N N 11.024 -49.358 -11.827 -5.302 -3.909 -1.374 H061 9XB 68 9XB H073 H26 H 0 0 N N N 13.794 -49.486 -9.454 -4.735 -0.985 -3.473 H073 9XB 69 9XB H072 H27 H 0 0 N N N 13.335 -48.041 -10.417 -3.007 -1.326 -3.734 H072 9XB 70 9XB H071 H28 H 0 0 N N N 12.061 -49.073 -9.683 -4.242 -2.342 -4.515 H071 9XB 71 9XB H082 H29 H 0 0 N N N 13.497 -53.145 -10.377 -4.813 -0.327 -1.520 H082 9XB 72 9XB H081 H30 H 0 0 N N N 14.163 -51.640 -9.657 -5.377 -1.565 -0.373 H081 9XB 73 9XB H091 H31 H 0 0 N N N 14.638 -52.639 -12.509 -3.556 -0.888 1.208 H091 9XB 74 9XB H111 H32 H 0 0 N N N 17.141 -50.536 -13.082 -2.391 1.658 1.714 H111 9XB 75 9XB H121 H33 H 0 0 N N N 17.442 -52.801 -12.829 -4.713 2.647 -0.034 H121 9XB 76 9XB H122 H34 H 0 0 N N N 18.253 -52.345 -11.292 -4.532 2.761 1.748 H122 9XB 77 9XB H141 H35 H 0 0 N N N 17.684 -50.430 -10.100 -2.539 3.069 -1.000 H141 9XB 78 9XB H161 H36 H 0 0 N N N 15.686 -48.923 -10.697 -0.528 1.589 -0.620 H161 9XB 79 9XB H252 H37 H 0 0 N N N 16.195 -42.109 -12.911 1.204 -2.572 2.032 H252 9XB 80 9XB H251 H38 H 0 0 N N N 15.004 -42.370 -14.231 1.522 -2.932 3.765 H251 9XB 81 9XB H271 H39 H 0 0 N N N 12.979 -42.141 -12.270 4.384 -0.878 1.742 H271 9XB 82 9XB H272 H40 H 0 0 N N N 12.931 -43.177 -13.737 4.094 -2.608 2.022 H272 9XB 83 9XB H321 H41 H 0 0 N N N 13.170 -46.584 -8.208 2.563 0.627 -3.363 H321 9XB 84 9XB H333 H42 H 0 0 N N N 13.416 -44.677 -6.638 4.641 -0.738 -3.352 H333 9XB 85 9XB H331 H43 H 0 0 N N N 13.025 -43.524 -7.959 5.007 0.992 -3.564 H331 9XB 86 9XB H332 H44 H 0 0 N N N 11.777 -44.676 -7.373 5.251 0.218 -1.980 H332 9XB 87 9XB H341 H45 H 0 0 N N N 14.899 -44.422 -9.509 4.019 2.033 -1.098 H341 9XB 88 9XB H361 H46 H 0 0 N N N 17.123 -45.989 -10.425 1.924 3.853 0.008 H361 9XB 89 9XB H371 H47 H 0 0 N N N 17.569 -46.286 -7.589 1.666 4.678 -2.787 H371 9XB 90 9XB H372 H48 H 0 0 N N N 17.575 -44.782 -8.571 2.997 4.940 -1.638 H372 9XB 91 9XB H381 H49 H 0 0 N N N 15.706 -44.289 -7.295 4.176 3.461 -2.949 H381 9XB 92 9XB H382 H50 H 0 0 N N N 15.352 -46.019 -6.964 2.690 2.798 -3.712 H382 9XB 93 9XB H391 H51 H 0 0 N N N 18.286 -47.909 -9.472 -0.209 4.607 -0.707 H391 9XB 94 9XB H401 H52 H 0 0 N N N 16.992 -48.076 -7.354 -1.509 3.548 -2.503 H401 9XB 95 9XB H402 H53 H 0 0 N N N 15.547 -48.621 -8.272 0.047 4.141 -3.131 H402 9XB 96 9XB H403 H54 H 0 0 N N N 17.017 -49.653 -8.214 -0.181 2.405 -2.812 H403 9XB 97 9XB H412 H55 H 0 0 N N N 10.661 -42.833 -11.312 2.655 -3.881 0.613 H412 9XB 98 9XB H411 H56 H 0 0 N N N 10.198 -44.568 -11.367 2.515 -3.221 -1.033 H411 9XB 99 9XB H421 H57 H 0 0 N N N 10.800 -42.776 -13.794 4.951 -2.612 -0.943 H421 9XB 100 9XB H422 H58 H 0 0 N N N 9.172 -43.310 -13.258 5.057 -3.415 0.642 H422 9XB 101 9XB H432 H59 H 0 0 N N N 9.979 -44.690 -15.187 5.781 -4.937 -1.177 H432 9XB 102 9XB H431 H60 H 0 0 N N N 11.435 -45.163 -14.247 4.306 -5.543 -0.386 H431 9XB 103 9XB H433 H61 H 0 0 N N N 9.806 -45.697 -13.710 4.200 -4.739 -1.971 H433 9XB 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9XB C21 C20 SING N N 1 9XB C43 C42 SING N N 2 9XB C26 C25 SING N N 3 9XB C26 C22 SING N N 4 9XB C20 C22 SING N N 5 9XB C20 C18 SING N N 6 9XB C25 C24 SING N N 7 9XB C42 C41 SING N N 8 9XB C22 O23 SING N N 9 9XB C18 O19 DOUB N N 10 9XB C18 O17 SING N N 11 9XB C27 C24 SING N N 12 9XB C27 C28 SING N N 13 9XB O23 C24 SING N N 14 9XB C06 N05 SING N N 15 9XB C11 O10 SING N N 16 9XB C11 C12 SING N N 17 9XB C11 C14 SING N N 18 9XB C28 C41 SING N N 19 9XB C28 O29 SING N N 20 9XB O17 C16 SING N N 21 9XB O10 C09 SING N N 22 9XB C12 C13 SING N N 23 9XB C09 C13 SING N N 24 9XB C09 C08 SING N N 25 9XB C15 C14 SING N N 26 9XB N05 C04 SING N N 27 9XB N05 C07 SING N N 28 9XB C04 C08 SING N N 29 9XB C04 C03 SING N N 30 9XB C14 C16 SING N N 31 9XB C16 C39 SING N N 32 9XB O29 C30 SING N N 33 9XB O31 C30 DOUB N N 34 9XB C03 C01 SING N N 35 9XB C01 C02 SING N N 36 9XB C30 C32 SING N N 37 9XB O35 C36 SING N N 38 9XB O35 C34 SING N N 39 9XB C36 C39 SING N N 40 9XB C36 C37 SING N N 41 9XB C39 C40 SING N N 42 9XB C34 C32 SING N N 43 9XB C34 C38 SING N N 44 9XB C32 C33 SING N N 45 9XB C37 C38 SING N N 46 9XB C13 H132 SING N N 47 9XB C13 H131 SING N N 48 9XB C15 H151 SING N N 49 9XB C15 H152 SING N N 50 9XB C15 H153 SING N N 51 9XB C20 H201 SING N N 52 9XB C21 H213 SING N N 53 9XB C21 H211 SING N N 54 9XB C21 H212 SING N N 55 9XB C22 H221 SING N N 56 9XB C24 H241 SING N N 57 9XB C26 H262 SING N N 58 9XB C26 H261 SING N N 59 9XB C28 H281 SING N N 60 9XB C01 H011 SING N N 61 9XB C01 H012 SING N N 62 9XB C02 H021 SING N N 63 9XB C02 H023 SING N N 64 9XB C02 H022 SING N N 65 9XB C03 H031 SING N N 66 9XB C03 H032 SING N N 67 9XB C04 H041 SING N N 68 9XB C06 H062 SING N N 69 9XB C06 H063 SING N N 70 9XB C06 H061 SING N N 71 9XB C07 H073 SING N N 72 9XB C07 H072 SING N N 73 9XB C07 H071 SING N N 74 9XB C08 H082 SING N N 75 9XB C08 H081 SING N N 76 9XB C09 H091 SING N N 77 9XB C11 H111 SING N N 78 9XB C12 H121 SING N N 79 9XB C12 H122 SING N N 80 9XB C14 H141 SING N N 81 9XB C16 H161 SING N N 82 9XB C25 H252 SING N N 83 9XB C25 H251 SING N N 84 9XB C27 H271 SING N N 85 9XB C27 H272 SING N N 86 9XB C32 H321 SING N N 87 9XB C33 H333 SING N N 88 9XB C33 H331 SING N N 89 9XB C33 H332 SING N N 90 9XB C34 H341 SING N N 91 9XB C36 H361 SING N N 92 9XB C37 H371 SING N N 93 9XB C37 H372 SING N N 94 9XB C38 H381 SING N N 95 9XB C38 H382 SING N N 96 9XB C39 H391 SING N N 97 9XB C40 H401 SING N N 98 9XB C40 H402 SING N N 99 9XB C40 H403 SING N N 100 9XB C41 H412 SING N N 101 9XB C41 H411 SING N N 102 9XB C42 H421 SING N N 103 9XB C42 H422 SING N N 104 9XB C43 H432 SING N N 105 9XB C43 H431 SING N N 106 9XB C43 H433 SING N N 107 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9XB InChI InChI 1.03 "InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3/t21-,22-,23+,24-,25-,26+,27+,28+,29-,30+,31-,32-,33+/m1/s1" 9XB InChIKey InChI 1.03 AHOIPAFUOXGGQB-IKNPUDIKSA-N 9XB SMILES_CANONICAL CACTVS 3.385 "CCC[C@H]1C[C@@H]2CC[C@@H](O2)[C@H](C)C(=O)O[C@@H]([C@H](C)[C@H]3CC[C@@H](C[C@@H](CCC)N(C)C)O3)[C@H](C)[C@@H]4CC[C@@H](O4)[C@@H](C)C(=O)O1" 9XB SMILES CACTVS 3.385 "CCC[CH]1C[CH]2CC[CH](O2)[CH](C)C(=O)O[CH]([CH](C)[CH]3CC[CH](C[CH](CCC)N(C)C)O3)[CH](C)[CH]4CC[CH](O4)[CH](C)C(=O)O1" 9XB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC[C@H]1C[C@@H]2CC[C@@H](O2)[C@@H](C(=O)O[C@H]([C@@H]([C@@H]3CC[C@@H](O3)[C@H](C(=O)O1)C)C)[C@H](C)[C@H]4CC[C@H](O4)C[C@@H](CCC)N(C)C)C" 9XB SMILES "OpenEye OEToolkits" 2.0.6 "CCCC1CC2CCC(O2)C(C(=O)OC(C(C3CCC(O3)C(C(=O)O1)C)C)C(C)C4CCC(O4)CC(CCC)N(C)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9XB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},2~{S},5~{S},6~{R},7~{S},10~{R},11~{R},14~{S},16~{S})-5-[(1~{R})-1-[(2~{R},5~{S})-5-[(2~{R})-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9XB "Create component" 2017-07-24 EBI 9XB "Modify name" 2017-08-01 EBI 9XB "Initial release" 2018-04-11 RCSB #