data_9XL # _chem_comp.id 9XL _chem_comp.name "(2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 Cl N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-01 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.999 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9XL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SOK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9XL C13 C1 C 0 1 N N R 14.692 12.994 35.941 0.910 -0.569 -0.973 C13 9XL 1 9XL C17 C2 C 0 1 N N N 15.833 8.509 35.742 -3.137 -1.122 -1.778 C17 9XL 2 9XL C20 C3 C 0 1 Y N N 15.333 4.940 35.958 -6.171 -2.895 -1.582 C20 9XL 3 9XL C21 C4 C 0 1 Y N N 15.038 3.703 36.490 -7.414 -3.294 -1.132 C21 9XL 4 9XL C22 C5 C 0 1 Y N N 14.668 3.580 37.810 -7.984 -2.687 -0.031 C22 9XL 5 9XL C24 C6 C 0 1 N N N 14.184 4.580 40.048 -7.918 -1.015 1.814 C24 9XL 6 9XL C28 C7 C 0 1 N N N 14.389 10.998 33.789 -2.049 1.630 -1.633 C28 9XL 7 9XL C02 C8 C 0 1 Y N N 13.253 18.237 40.246 8.005 -0.679 0.250 C02 9XL 8 9XL C04 C9 C 0 1 Y N N 11.993 18.107 38.323 7.146 -2.816 0.184 C04 9XL 9 9XL C06 C10 C 0 1 Y N N 13.832 16.699 38.500 5.630 -1.092 0.119 C06 9XL 10 9XL C07 C11 C 0 1 Y N N 14.116 17.233 39.745 6.703 -0.180 0.183 C07 9XL 11 9XL C08 C12 C 0 1 Y N N 15.275 16.557 40.206 6.104 1.154 0.160 C08 9XL 12 9XL C09 C13 C 0 1 Y N N 15.628 15.656 39.199 4.775 0.982 0.087 C09 9XL 13 9XL C11 C14 C 0 1 N N R 14.745 15.009 36.947 3.126 -0.915 -0.015 C11 9XL 14 9XL C12 C15 C 0 1 N N N 14.142 13.832 37.121 2.411 -0.447 -1.307 C12 9XL 15 9XL C14 C16 C 0 1 N N N 14.745 11.605 36.305 0.136 0.586 -1.613 C14 9XL 16 9XL C16 C17 C 0 1 N N N 16.159 9.905 35.136 -1.813 -0.697 -2.260 C16 9XL 17 9XL C18 C18 C 0 1 N N N 15.583 7.467 36.176 -4.194 -1.460 -1.394 C18 9XL 18 9XL C19 C19 C 0 1 Y N N 15.253 6.050 36.753 -5.482 -1.873 -0.926 C19 9XL 19 9XL C23 C20 C 0 1 Y N N 14.591 4.692 38.588 -7.306 -1.664 0.635 C23 9XL 20 9XL C27 C21 C 0 1 Y N N 14.877 5.936 38.056 -6.051 -1.257 0.186 C27 9XL 21 9XL C29 C22 C 0 1 N N N 13.198 10.140 33.507 -1.791 2.596 -0.476 C29 9XL 22 9XL C30 C23 C 0 1 N N S 12.803 10.045 32.020 -2.676 3.834 -0.639 C30 9XL 23 9XL C32 C24 C 0 1 N N N 12.616 8.581 31.679 -2.513 4.729 0.563 C32 9XL 24 9XL C35 C25 C 0 1 N N R 16.149 13.599 35.690 0.793 -0.496 0.559 C35 9XL 25 9XL C37 C26 C 0 1 N N S 16.276 14.610 36.518 2.227 -0.334 1.104 C37 9XL 26 9XL N03 N1 N 0 1 Y N N 12.220 18.633 39.506 8.177 -1.992 0.245 N03 9XL 27 9XL N05 N2 N 0 1 Y N N 12.773 17.151 37.813 5.902 -2.394 0.125 N05 9XL 28 9XL N10 N3 N 0 1 Y N N 14.751 15.776 38.207 4.478 -0.356 0.062 N10 9XL 29 9XL N15 N4 N 0 1 N N N 14.876 10.633 35.145 -1.304 0.384 -1.405 N15 9XL 30 9XL N25 N5 N 0 1 N N N 13.295 5.572 40.627 -9.132 -1.409 2.247 N25 9XL 31 9XL N31 N6 N 0 1 N N N 11.566 10.704 31.780 -2.279 4.564 -1.850 N31 9XL 32 9XL O26 O1 O 0 1 N N N 14.586 3.691 40.702 -7.326 -0.124 2.393 O26 9XL 33 9XL O33 O2 O 0 1 N N N 13.621 7.881 31.396 -1.792 5.697 0.502 O33 9XL 34 9XL O34 O3 O 0 1 N N N 11.476 8.081 31.693 -3.169 4.452 1.700 O34 9XL 35 9XL O36 O4 O 0 1 N N N 16.187 14.018 34.312 0.212 -1.701 1.063 O36 9XL 36 9XL O38 O5 O 0 1 N N N 16.901 15.725 35.902 2.390 -1.077 2.313 O38 9XL 37 9XL CL1 CL1 CL 0 0 N N N 13.539 18.971 41.874 9.366 0.395 0.331 CL1 9XL 38 9XL H1 H1 H 0 1 N N N 14.073 13.154 35.046 0.524 -1.522 -1.334 H1 9XL 39 9XL H2 H2 H 0 1 N N N 15.625 5.032 34.922 -5.729 -3.377 -2.442 H2 9XL 40 9XL H3 H3 H 0 1 N N N 15.098 2.823 35.866 -7.943 -4.085 -1.644 H3 9XL 41 9XL H4 H4 H 0 1 N N N 14.441 2.609 38.224 -8.957 -3.003 0.316 H4 9XL 42 9XL H5 H5 H 0 1 N N N 15.175 10.811 33.042 -3.115 1.410 -1.693 H5 9XL 43 9XL H6 H6 H 0 1 N N N 14.104 12.060 33.763 -1.719 2.085 -2.567 H6 9XL 44 9XL H7 H7 H 0 1 N N N 11.150 18.459 37.746 7.333 -3.880 0.182 H7 9XL 45 9XL H8 H8 H 0 1 N N N 15.783 16.709 41.147 6.630 2.097 0.195 H8 9XL 46 9XL H9 H9 H 0 1 N N N 16.469 14.978 39.222 4.047 1.779 0.054 H9 9XL 47 9XL H10 H10 H 0 1 N N N 14.299 15.602 36.135 3.157 -2.004 0.036 H10 9XL 48 9XL H11 H11 H 0 1 N N N 13.048 13.933 37.061 2.670 -1.096 -2.143 H11 9XL 49 9XL H12 H12 H 0 1 N N N 14.416 13.384 38.088 2.670 0.588 -1.532 H12 9XL 50 9XL H13 H13 H 0 1 N N N 13.821 11.361 36.850 0.441 1.526 -1.154 H13 9XL 51 9XL H14 H14 H 0 1 N N N 15.610 11.461 36.968 0.348 0.618 -2.682 H14 9XL 52 9XL H15 H15 H 0 1 N N N 16.538 9.802 34.109 -1.125 -1.542 -2.225 H15 9XL 53 9XL H16 H16 H 0 1 N N N 16.905 10.429 35.751 -1.897 -0.340 -3.287 H16 9XL 54 9XL H17 H17 H 0 1 N N N 14.802 6.818 38.675 -5.523 -0.466 0.697 H17 9XL 55 9XL H18 H18 H 0 1 N N N 12.342 10.551 34.062 -2.025 2.104 0.468 H18 9XL 56 9XL H19 H19 H 0 1 N N N 13.416 9.124 33.868 -0.743 2.896 -0.479 H19 9XL 57 9XL H20 H20 H 0 1 N N N 13.606 10.472 31.401 -3.718 3.527 -0.725 H20 9XL 58 9XL H21 H21 H 0 1 N N N 16.890 12.807 35.873 0.185 0.361 0.847 H21 9XL 59 9XL H22 H22 H 0 1 N N N 16.814 14.328 37.435 2.455 0.720 1.268 H22 9XL 60 9XL H24 H24 H 0 1 N N N 13.023 5.500 41.586 -9.533 -0.983 3.020 H24 9XL 61 9XL H25 H25 H 0 1 N N N 12.955 6.327 40.066 -9.604 -2.120 1.785 H25 9XL 62 9XL H26 H26 H 0 1 N N N 11.658 11.676 31.997 -1.316 4.859 -1.795 H26 9XL 63 9XL H27 H27 H 0 1 N N N 11.314 10.600 30.818 -2.439 4.007 -2.676 H27 9XL 64 9XL H29 H29 H 0 1 N N N 11.531 7.160 31.468 -3.033 5.055 2.444 H29 9XL 65 9XL H30 H30 H 0 1 N N N 17.040 14.387 34.116 0.112 -1.717 2.025 H30 9XL 66 9XL H31 H31 H 0 1 N N N 16.975 16.434 36.530 1.808 -0.792 3.031 H31 9XL 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9XL O33 C32 DOUB N N 1 9XL C32 O34 SING N N 2 9XL C32 C30 SING N N 3 9XL N31 C30 SING N N 4 9XL C30 C29 SING N N 5 9XL C29 C28 SING N N 6 9XL C28 N15 SING N N 7 9XL O36 C35 SING N N 8 9XL C16 N15 SING N N 9 9XL C16 C17 SING N N 10 9XL N15 C14 SING N N 11 9XL C35 C13 SING N N 12 9XL C35 C37 SING N N 13 9XL C17 C18 TRIP N N 14 9XL O38 C37 SING N N 15 9XL C13 C14 SING N N 16 9XL C13 C12 SING N N 17 9XL C20 C21 DOUB Y N 18 9XL C20 C19 SING Y N 19 9XL C18 C19 SING N N 20 9XL C21 C22 SING Y N 21 9XL C37 C11 SING N N 22 9XL C19 C27 DOUB Y N 23 9XL C11 C12 SING N N 24 9XL C11 N10 SING N N 25 9XL C22 C23 DOUB Y N 26 9XL N05 C04 DOUB Y N 27 9XL N05 C06 SING Y N 28 9XL C27 C23 SING Y N 29 9XL N10 C06 SING Y N 30 9XL N10 C09 SING Y N 31 9XL C04 N03 SING Y N 32 9XL C06 C07 DOUB Y N 33 9XL C23 C24 SING N N 34 9XL C09 C08 DOUB Y N 35 9XL N03 C02 DOUB Y N 36 9XL C07 C08 SING Y N 37 9XL C07 C02 SING Y N 38 9XL C24 N25 SING N N 39 9XL C24 O26 DOUB N N 40 9XL C02 CL1 SING N N 41 9XL C13 H1 SING N N 42 9XL C20 H2 SING N N 43 9XL C21 H3 SING N N 44 9XL C22 H4 SING N N 45 9XL C28 H5 SING N N 46 9XL C28 H6 SING N N 47 9XL C04 H7 SING N N 48 9XL C08 H8 SING N N 49 9XL C09 H9 SING N N 50 9XL C11 H10 SING N N 51 9XL C12 H11 SING N N 52 9XL C12 H12 SING N N 53 9XL C14 H13 SING N N 54 9XL C14 H14 SING N N 55 9XL C16 H15 SING N N 56 9XL C16 H16 SING N N 57 9XL C27 H17 SING N N 58 9XL C29 H18 SING N N 59 9XL C29 H19 SING N N 60 9XL C30 H20 SING N N 61 9XL C35 H21 SING N N 62 9XL C37 H22 SING N N 63 9XL N25 H24 SING N N 64 9XL N25 H25 SING N N 65 9XL N31 H26 SING N N 66 9XL N31 H27 SING N N 67 9XL O34 H29 SING N N 68 9XL O36 H30 SING N N 69 9XL O38 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9XL SMILES ACDLabs 12.01 "NC(=O)c1cccc(c1)C#CCN(CCC(N)C(=O)O)CC1CC(C(O)C1O)n1ccc2c1ncnc2Cl" 9XL InChI InChI 1.03 "InChI=1S/C26H29ClN6O5/c27-23-18-6-10-33(25(18)31-14-30-23)20-12-17(21(34)22(20)35)13-32(9-7-19(28)26(37)38)8-2-4-15-3-1-5-16(11-15)24(29)36/h1,3,5-6,10-11,14,17,19-22,34-35H,7-9,12-13,28H2,(H2,29,36)(H,37,38)/t17-,19+,20-,21-,22+/m1/s1" 9XL InChIKey InChI 1.03 JIYDUPLVTSNGNC-BLCKVISQSA-N 9XL SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CC#Cc1cccc(c1)C(N)=O)C[C@H]2C[C@H]([C@H](O)[C@@H]2O)n3ccc4c(Cl)ncnc34)C(O)=O" 9XL SMILES CACTVS 3.385 "N[CH](CCN(CC#Cc1cccc(c1)C(N)=O)C[CH]2C[CH]([CH](O)[CH]2O)n3ccc4c(Cl)ncnc34)C(O)=O" 9XL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)C#CCN(CC[C@@H](C(=O)O)N)C[C@H]2C[C@H]([C@@H]([C@@H]2O)O)n3ccc4c3ncnc4Cl" 9XL SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)C#CCN(CCC(C(=O)O)N)CC2CC(C(C2O)O)n3ccc4c3ncnc4Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9XL "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid" 9XL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[3-(3-aminocarbonylphenyl)prop-2-ynyl-[[(1~{R},2~{R},3~{S},4~{R})-4-(4-chloranylpyrrolo[2,3-d]pyrimidin-7-yl)-2,3-bis(oxidanyl)cyclopentyl]methyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9XL "Create component" 2021-11-01 RCSB 9XL "Initial release" 2022-11-02 RCSB #