data_9XR # _chem_comp.id 9XR _chem_comp.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylanilino)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H29 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-01 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 677.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9XR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SNE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9XR O7N O1 O 0 1 N N N -2.951 56.542 21.053 -7.658 -2.933 1.185 O7N 9XR 1 9XR C7N C1 C 0 1 N N N -4.058 56.037 20.827 -7.814 -3.447 0.095 C7N 9XR 2 9XR N7N N1 N 0 1 N N N -5.177 56.719 21.017 -8.223 -4.728 0.006 N7N 9XR 3 9XR C3N C2 C 0 1 Y N N -4.086 54.627 20.339 -7.561 -2.664 -1.134 C3N 9XR 4 9XR C2N C3 C 0 1 Y N N -5.154 54.152 19.584 -7.133 -1.340 -1.045 C2N 9XR 5 9XR C4N C4 C 0 1 Y N N -3.027 53.794 20.658 -7.745 -3.251 -2.388 C4N 9XR 6 9XR C5N C5 C 0 1 Y N N -3.019 52.489 20.208 -7.508 -2.519 -3.533 C5N 9XR 7 9XR C6N C6 C 0 1 Y N N -4.072 52.015 19.432 -7.089 -1.204 -3.445 C6N 9XR 8 9XR C1N C7 C 0 1 Y N N -5.130 52.859 19.106 -6.893 -0.615 -2.202 C1N 9XR 9 9XR C1D C8 C 0 1 N N S -7.516 52.886 18.484 -6.405 1.381 -0.816 C1D 9XR 10 9XR O4D O2 O 0 1 N N N -7.728 53.769 17.379 -5.079 1.279 -0.282 O4D 9XR 11 9XR C2D C9 C 0 1 N N R -8.670 51.870 18.447 -6.728 2.882 -0.977 C2D 9XR 12 9XR O2D O3 O 0 1 N N N -8.303 50.563 18.072 -6.489 3.312 -2.319 O2D 9XR 13 9XR C3D C10 C 0 1 N N S -9.622 52.426 17.411 -5.724 3.544 0.006 C3D 9XR 14 9XR O3D O4 O 0 1 N N N -9.483 51.755 16.170 -5.387 4.867 -0.414 O3D 9XR 15 9XR C4D C11 C 0 1 N N R -9.148 53.848 17.239 -4.511 2.589 -0.126 C4D 9XR 16 9XR C5D C12 C 0 1 N N N -9.736 54.751 18.319 -3.650 2.647 1.137 C5D 9XR 17 9XR O5D O5 O 0 1 N N N -9.011 55.969 18.377 -2.510 1.800 0.976 O5D 9XR 18 9XR PN P1 P 0 1 N N N -8.842 56.721 19.777 -1.386 1.617 2.114 PN 9XR 19 9XR O1N O6 O 0 1 N N N -8.272 55.812 20.822 -0.621 3.016 2.342 O1N 9XR 20 9XR O2N O7 O 0 1 N N N -8.156 58.030 19.479 -2.027 1.193 3.379 O2N 9XR 21 9XR O3 O8 O 0 1 N N N -10.385 56.988 20.076 -0.327 0.497 1.647 O3 9XR 22 9XR PA P2 P 0 1 N N N -11.122 57.811 21.265 0.741 -0.424 2.423 PA 9XR 23 9XR O1A O9 O 0 1 N N N -10.776 57.171 22.576 -0.016 -1.680 3.088 O1A 9XR 24 9XR O2A O10 O 0 1 N N N -12.573 57.912 20.880 1.401 0.371 3.483 O2A 9XR 25 9XR O5B O11 O 0 1 N N N -10.407 59.251 21.236 1.848 -0.955 1.382 O5B 9XR 26 9XR C5B C13 C 0 1 N N N -10.578 60.144 20.150 2.992 -1.713 1.781 C5B 9XR 27 9XR C4B C14 C 0 1 N N R -10.827 61.523 20.734 3.833 -2.054 0.549 C4B 9XR 28 9XR C3B C15 C 0 1 N N S -9.826 61.990 21.790 5.011 -2.961 0.954 C3B 9XR 29 9XR O3B O12 O 0 1 N N N -8.617 62.547 21.276 4.941 -4.210 0.262 O3B 9XR 30 9XR C2B C16 C 0 1 N N R -10.609 63.079 22.481 6.267 -2.169 0.518 C2B 9XR 31 9XR O2B O13 O 0 1 N N N -10.741 64.251 21.658 7.241 -3.038 -0.065 O2B 9XR 32 9XR C1B C17 C 0 1 N N R -11.976 62.452 22.538 5.688 -1.199 -0.542 C1B 9XR 33 9XR O4B O14 O 0 1 N N N -12.105 61.575 21.393 4.391 -0.853 -0.009 O4B 9XR 34 9XR N9A N2 N 0 1 Y N N -12.339 61.639 23.720 6.530 -0.006 -0.665 N9A 9XR 35 9XR C4A C18 C 0 1 Y N N -13.148 62.051 24.681 7.646 0.122 -1.452 C4A 9XR 36 9XR C5A C19 C 0 1 Y N N -13.332 60.884 25.535 8.118 1.429 -1.247 C5A 9XR 37 9XR N7A N3 N 0 1 Y N N -12.674 59.843 25.001 7.280 2.021 -0.361 N7A 9XR 38 9XR C8A C20 C 0 1 Y N N -12.078 60.323 23.901 6.345 1.182 -0.023 C8A 9XR 39 9XR N3A N4 N 0 1 Y N N -13.708 63.238 24.999 8.301 -0.677 -2.289 N3A 9XR 40 9XR C2A C21 C 0 1 Y N N -14.455 63.294 26.101 9.377 -0.252 -2.918 C2A 9XR 41 9XR N1A N5 N 0 1 Y N N -14.677 62.255 26.929 9.857 0.967 -2.757 N1A 9XR 42 9XR C6A C22 C 0 1 Y N N -14.161 61.040 26.716 9.270 1.836 -1.941 C6A 9XR 43 9XR N6A N6 N 0 1 N N N -14.381 60.025 27.554 9.781 3.112 -1.778 N6A 9XR 44 9XR N8N N7 N 0 1 N N N -6.193 52.309 18.430 -6.469 0.714 -2.118 N8N 9XR 45 9XR H71N H1 H 0 0 N N N -5.138 57.661 21.349 -8.392 -5.240 0.812 H71N 9XR 46 9XR H72N H2 H 0 0 N N N -6.061 56.292 20.828 -8.347 -5.138 -0.864 H72N 9XR 47 9XR H2N H3 H 0 1 N N N -5.997 54.793 19.374 -6.990 -0.881 -0.078 H2N 9XR 48 9XR H4N H4 H 0 1 N N N -2.209 54.165 21.258 -8.072 -4.277 -2.461 H4N 9XR 49 9XR H5N H5 H 0 1 N N N -2.196 51.836 20.458 -7.650 -2.974 -4.502 H5N 9XR 50 9XR H6N1 H6 H 0 0 N N N -4.069 50.993 19.083 -6.904 -0.637 -4.345 H6N1 9XR 51 9XR H1D H7 H 0 1 N N N -7.611 53.459 19.418 -7.116 0.922 -0.129 H1D 9XR 52 9XR H2D H8 H 0 1 N N N -9.168 51.865 19.428 -7.756 3.092 -0.682 H2D 9XR 53 9XR HO2N H9 H 0 0 N N N -7.705 50.204 18.717 -7.034 2.862 -2.979 HO2N 9XR 54 9XR H3D H10 H 0 1 N N N -10.657 52.402 17.782 -6.114 3.545 1.024 H3D 9XR 55 9XR HO3N H11 H 0 0 N N N -9.778 50.856 16.261 -6.141 5.472 -0.450 HO3N 9XR 56 9XR H4D H12 H 0 1 N N N -9.430 54.223 16.244 -3.917 2.851 -1.002 H4D 9XR 57 9XR H51N H13 H 0 0 N N N -10.789 54.964 18.083 -3.319 3.672 1.305 H51N 9XR 58 9XR H52N H14 H 0 0 N N N -9.674 54.243 19.293 -4.235 2.310 1.992 H52N 9XR 59 9XR H1 H15 H 0 1 N N N -7.491 56.206 21.193 -0.177 3.354 1.553 H1 9XR 60 9XR H2 H16 H 0 1 N N N -11.573 56.898 23.015 -0.472 -2.247 2.451 H2 9XR 61 9XR H52A H17 H 0 0 N N N -11.438 59.833 19.539 3.590 -1.128 2.479 H52A 9XR 62 9XR H51A H18 H 0 0 N N N -9.671 60.157 19.527 2.667 -2.634 2.265 H51A 9XR 63 9XR H4B H19 H 0 1 N N N -10.816 62.251 19.909 3.214 -2.556 -0.195 H4B 9XR 64 9XR H3B H20 H 0 1 N N N -9.619 61.171 22.494 5.016 -3.122 2.032 H3B 9XR 65 9XR HO3A H21 H 0 0 N N N -8.057 62.809 21.997 5.659 -4.820 0.479 HO3A 9XR 66 9XR H2B H22 H 0 1 N N N -10.213 63.298 23.484 6.692 -1.620 1.358 H2B 9XR 67 9XR HO2A H23 H 0 0 N N N -11.238 64.912 22.125 7.568 -3.722 0.536 HO2A 9XR 68 9XR H1B H24 H 0 1 N N N -12.717 63.259 22.441 5.588 -1.698 -1.506 H1B 9XR 69 9XR H8A H25 H 0 1 N N N -11.463 59.731 23.239 5.541 1.395 0.667 H8A 9XR 70 9XR H2A H26 H 0 1 N N N -14.915 64.239 26.348 9.885 -0.926 -3.591 H2A 9XR 71 9XR H61A H27 H 0 0 N N N -14.961 60.334 28.308 9.344 3.737 -1.179 H61A 9XR 72 9XR H62A H28 H 0 0 N N N -14.838 59.282 27.065 10.577 3.381 -2.263 H62A 9XR 73 9XR HN8N H29 H 0 0 N N N -6.283 51.371 18.765 -6.218 1.195 -2.922 HN8N 9XR 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9XR O3D C3D SING N N 1 9XR C4D O4D SING N N 2 9XR C4D C3D SING N N 3 9XR C4D C5D SING N N 4 9XR O4D C1D SING N N 5 9XR C3D C2D SING N N 6 9XR O2D C2D SING N N 7 9XR C5D O5D SING N N 8 9XR O5D PN SING N N 9 9XR N8N C1D SING N N 10 9XR N8N C1N SING N N 11 9XR C2D C1D SING N N 12 9XR C1N C6N DOUB Y N 13 9XR C1N C2N SING Y N 14 9XR C6N C5N SING Y N 15 9XR O2N PN DOUB N N 16 9XR C2N C3N DOUB Y N 17 9XR PN O3 SING N N 18 9XR PN O1N SING N N 19 9XR O3 PA SING N N 20 9XR C5B C4B SING N N 21 9XR C5B O5B SING N N 22 9XR C5N C4N DOUB Y N 23 9XR C3N C4N SING Y N 24 9XR C3N C7N SING N N 25 9XR C4B O4B SING N N 26 9XR C4B C3B SING N N 27 9XR C7N N7N SING N N 28 9XR C7N O7N DOUB N N 29 9XR O2A PA DOUB N N 30 9XR O5B PA SING N N 31 9XR PA O1A SING N N 32 9XR O3B C3B SING N N 33 9XR O4B C1B SING N N 34 9XR O2B C2B SING N N 35 9XR C3B C2B SING N N 36 9XR C2B C1B SING N N 37 9XR C1B N9A SING N N 38 9XR N9A C8A SING Y N 39 9XR N9A C4A SING Y N 40 9XR C8A N7A DOUB Y N 41 9XR C4A N3A DOUB Y N 42 9XR C4A C5A SING Y N 43 9XR N3A C2A SING Y N 44 9XR N7A C5A SING Y N 45 9XR C5A C6A DOUB Y N 46 9XR C2A N1A DOUB Y N 47 9XR C6A N1A SING Y N 48 9XR C6A N6A SING N N 49 9XR N7N H71N SING N N 50 9XR N7N H72N SING N N 51 9XR C2N H2N SING N N 52 9XR C4N H4N SING N N 53 9XR C5N H5N SING N N 54 9XR C6N H6N1 SING N N 55 9XR C1D H1D SING N N 56 9XR C2D H2D SING N N 57 9XR O2D HO2N SING N N 58 9XR C3D H3D SING N N 59 9XR O3D HO3N SING N N 60 9XR C4D H4D SING N N 61 9XR C5D H51N SING N N 62 9XR C5D H52N SING N N 63 9XR O1N H1 SING N N 64 9XR O1A H2 SING N N 65 9XR C5B H52A SING N N 66 9XR C5B H51A SING N N 67 9XR C4B H4B SING N N 68 9XR C3B H3B SING N N 69 9XR O3B HO3A SING N N 70 9XR C2B H2B SING N N 71 9XR O2B HO2A SING N N 72 9XR C1B H1B SING N N 73 9XR C8A H8A SING N N 74 9XR C2A H2A SING N N 75 9XR N6A H61A SING N N 76 9XR N6A H62A SING N N 77 9XR N8N HN8N SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9XR SMILES ACDLabs 12.01 "NC(=O)c1cc(ccc1)NC1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O" 9XR InChI InChI 1.03 "InChI=1S/C22H29N7O14P2/c23-18-13-20(26-7-25-18)29(8-27-13)22-17(33)15(31)12(42-22)6-40-45(37,38)43-44(35,36)39-5-11-14(30)16(32)21(41-11)28-10-3-1-2-9(4-10)19(24)34/h1-4,7-8,11-12,14-17,21-22,28,30-33H,5-6H2,(H2,24,34)(H,35,36)(H,37,38)(H2,23,25,26)/t11-,12-,14-,15-,16-,17-,21+,22-/m1/s1" 9XR InChIKey InChI 1.03 OJEGJAIQKNCBOQ-ZLPBMXMUSA-N 9XR SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1cccc(N[C@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O)c1" 9XR SMILES CACTVS 3.385 "NC(=O)c1cccc(N[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O)c1" 9XR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)N[C@@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N" 9XR SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)NC2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9XR "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylanilino)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 9XR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{S})-5-[(3-aminocarbonylphenyl)amino]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9XR "Create component" 2021-11-01 RCSB 9XR "Initial release" 2022-04-13 RCSB ##