data_9YB # _chem_comp.id 9YB _chem_comp.name "(3~{R})-3-[[1-(2-hydroxyethyl)-5-[(4-methoxynaphthalen-1-yl)methyl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-3-yl]carbonylamino]-3-phenyl-propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H32 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-01 _chem_comp.pdbx_modified_date 2019-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9YB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OML _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9YB C4 C1 C 0 1 Y N N 42.575 21.575 29.822 -6.410 -0.415 -1.360 C4 9YB 1 9YB C5 C2 C 0 1 Y N N 42.795 20.268 29.293 -5.089 -0.375 -1.800 C5 9YB 2 9YB C6 C3 C 0 1 Y N N 42.915 22.511 27.599 -5.944 1.329 0.220 C6 9YB 3 9YB C11 C4 C 0 1 Y N N 43.109 21.147 27.131 -4.600 1.362 -0.227 C11 9YB 4 9YB C7 C5 C 0 1 Y N N 43.019 23.583 26.747 -6.352 2.202 1.241 C7 9YB 5 9YB C8 C6 C 0 1 Y N N 43.226 23.387 25.431 -5.454 3.067 1.787 C8 9YB 6 9YB C9 C7 C 0 1 Y N N 43.347 22.123 24.936 -4.132 3.100 1.348 C9 9YB 7 9YB C10 C8 C 0 1 Y N N 43.306 21.034 25.772 -3.701 2.268 0.360 C10 9YB 8 9YB C12 C9 C 0 1 Y N N 43.052 20.066 27.982 -4.192 0.491 -1.252 C12 9YB 9 9YB C13 C10 C 0 1 N N N 43.262 18.646 27.549 -2.768 0.515 -1.744 C13 9YB 10 9YB C3 C11 C 0 1 Y N N 42.679 22.673 29.020 -6.845 0.419 -0.369 C3 9YB 11 9YB C1 C12 C 0 1 N N N 42.240 24.277 30.713 -8.991 -0.576 -0.600 C1 9YB 12 9YB O2 O1 O 0 1 N N N 42.543 23.982 29.345 -8.138 0.371 0.045 O2 9YB 13 9YB N14 N1 N 0 1 N N N 44.742 18.119 27.653 -1.917 -0.241 -0.815 N14 9YB 14 9YB C15 C13 C 0 1 N N N 45.171 17.733 28.984 -0.489 -0.043 -1.127 C15 9YB 15 9YB C16 C14 C 0 1 Y N N 46.579 17.283 29.090 0.316 -0.933 -0.221 C16 9YB 16 9YB C17 C15 C 0 1 N N N 45.665 18.866 26.901 -2.275 -1.666 -0.813 C17 9YB 17 9YB C18 C16 C 0 1 N N N 47.158 18.306 26.965 -1.663 -2.355 0.415 C18 9YB 18 9YB C19 C17 C 0 1 Y N N 47.439 17.576 28.138 -0.206 -1.973 0.479 C19 9YB 19 9YB N20 N2 N 0 1 Y N N 48.685 17.108 28.584 0.797 -2.527 1.175 N20 9YB 20 9YB C21 C18 C 0 1 N N N 49.932 17.298 27.764 0.662 -3.681 2.068 C21 9YB 21 9YB C22 C19 C 0 1 N N N 50.513 15.937 27.463 0.892 -4.969 1.275 C22 9YB 22 9YB O23 O2 O 0 1 N N N 49.574 15.484 26.451 0.761 -6.094 2.146 O23 9YB 23 9YB N24 N3 N 0 1 Y N N 48.570 16.575 29.607 1.896 -1.895 0.943 N24 9YB 24 9YB C25 C20 C 0 1 Y N N 47.268 16.630 30.089 1.683 -0.904 0.095 C25 9YB 25 9YB C26 C21 C 0 1 N N N 46.823 16.106 31.262 2.687 0.050 -0.419 C26 9YB 26 9YB O27 O3 O 0 1 N N N 45.676 16.323 31.725 2.354 0.922 -1.199 O27 9YB 27 9YB N28 N4 N 0 1 N N N 47.682 15.453 32.057 3.972 -0.046 -0.024 N28 9YB 28 9YB C29 C22 C 0 1 N N R 47.436 14.931 33.395 4.988 0.827 -0.616 C29 9YB 29 9YB C30 C23 C 0 1 N N N 46.164 14.011 33.611 6.355 0.146 -0.536 C30 9YB 30 9YB C37 C24 C 0 1 N N N 46.592 12.640 33.078 6.354 -1.087 -1.403 C37 9YB 31 9YB O39 O4 O 0 1 N N N 46.036 12.251 32.021 5.338 -1.435 -1.957 O39 9YB 32 9YB O38 O5 O 0 1 N N N 47.541 12.064 33.688 7.482 -1.798 -1.559 O38 9YB 33 9YB C31 C25 C 0 1 Y N N 47.565 15.944 34.390 5.031 2.131 0.139 C31 9YB 34 9YB C32 C26 C 0 1 Y N N 47.746 17.299 34.015 4.920 2.136 1.516 C32 9YB 35 9YB C33 C27 C 0 1 Y N N 48.016 18.192 35.093 4.960 3.332 2.209 C33 9YB 36 9YB C34 C28 C 0 1 Y N N 47.986 17.791 36.370 5.110 4.523 1.523 C34 9YB 37 9YB C35 C29 C 0 1 Y N N 47.794 16.448 36.764 5.222 4.518 0.145 C35 9YB 38 9YB C36 C30 C 0 1 Y N N 47.614 15.535 35.712 5.187 3.321 -0.547 C36 9YB 39 9YB H1 H1 H 0 1 N N N 42.324 21.695 30.866 -7.100 -1.112 -1.812 H1 9YB 40 9YB H2 H2 H 0 1 N N N 42.755 19.418 29.958 -4.771 -1.042 -2.587 H2 9YB 41 9YB H3 H3 H 0 1 N N N 42.934 24.588 27.134 -7.374 2.188 1.591 H3 9YB 42 9YB H4 H4 H 0 1 N N N 43.296 24.235 24.765 -5.770 3.737 2.572 H4 9YB 43 9YB H5 H5 H 0 1 N N N 43.477 21.976 23.874 -3.439 3.796 1.797 H5 9YB 44 9YB H6 H6 H 0 1 N N N 43.433 20.049 25.347 -2.673 2.305 0.030 H6 9YB 45 9YB H7 H7 H 0 1 N N N 42.945 18.561 26.499 -2.717 0.062 -2.734 H7 9YB 46 9YB H8 H8 H 0 1 N N N 42.628 18.003 28.177 -2.420 1.547 -1.798 H8 9YB 47 9YB H9 H9 H 0 1 N N N 42.156 25.366 30.844 -9.033 -0.360 -1.667 H9 9YB 48 9YB H10 H10 H 0 1 N N N 41.288 23.800 30.989 -8.598 -1.582 -0.448 H10 9YB 49 9YB H11 H11 H 0 1 N N N 43.043 23.891 31.358 -9.993 -0.510 -0.176 H11 9YB 50 9YB H13 H13 H 0 1 N N N 45.041 18.600 29.648 -0.300 -0.310 -2.167 H13 9YB 51 9YB H14 H14 H 0 1 N N N 44.525 16.910 29.324 -0.217 0.998 -0.958 H14 9YB 52 9YB H15 H15 H 0 1 N N N 45.666 19.898 27.281 -3.360 -1.766 -0.782 H15 9YB 53 9YB H16 H16 H 0 1 N N N 45.339 18.862 25.850 -1.894 -2.136 -1.720 H16 9YB 54 9YB H17 H17 H 0 1 N N N 47.319 17.647 26.099 -2.172 -2.019 1.318 H17 9YB 55 9YB H18 H18 H 0 1 N N N 47.851 19.158 26.912 -1.758 -3.436 0.317 H18 9YB 56 9YB H19 H19 H 0 1 N N N 50.661 17.897 28.329 1.400 -3.610 2.867 H19 9YB 57 9YB H20 H20 H 0 1 N N N 49.684 17.813 26.824 -0.339 -3.693 2.498 H20 9YB 58 9YB H21 H21 H 0 1 N N N 50.506 15.285 28.349 0.154 -5.040 0.476 H21 9YB 59 9YB H22 H22 H 0 1 N N N 51.537 16.008 27.068 1.893 -4.957 0.845 H22 9YB 60 9YB H23 H23 H 0 1 N N N 49.819 14.614 26.157 0.894 -6.947 1.710 H23 9YB 61 9YB H24 H24 H 0 1 N N N 48.600 15.307 31.688 4.224 -0.694 0.653 H24 9YB 62 9YB H25 H25 H 0 1 N N N 48.277 14.247 33.581 4.738 1.020 -1.660 H25 9YB 63 9YB H26 H26 H 0 1 N N N 45.303 14.397 33.045 7.125 0.835 -0.885 H26 9YB 64 9YB H27 H27 H 0 1 N N N 45.904 13.950 34.678 6.561 -0.136 0.496 H27 9YB 65 9YB H28 H28 H 0 1 N N N 47.783 11.272 33.222 7.431 -2.581 -2.125 H28 9YB 66 9YB H29 H29 H 0 1 N N N 47.684 17.630 32.989 4.802 1.206 2.052 H29 9YB 67 9YB H30 H30 H 0 1 N N N 48.252 19.223 34.873 4.872 3.336 3.285 H30 9YB 68 9YB H31 H31 H 0 1 N N N 48.116 18.535 37.142 5.141 5.457 2.064 H31 9YB 69 9YB H32 H32 H 0 1 N N N 47.786 16.145 37.801 5.339 5.448 -0.391 H32 9YB 70 9YB H33 H33 H 0 1 N N N 47.511 14.485 35.941 5.278 3.317 -1.623 H33 9YB 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9YB C9 C8 DOUB Y N 1 9YB C9 C10 SING Y N 2 9YB C8 C7 SING Y N 3 9YB C10 C11 DOUB Y N 4 9YB O23 C22 SING N N 5 9YB C7 C6 DOUB Y N 6 9YB C17 C18 SING N N 7 9YB C17 N14 SING N N 8 9YB C18 C19 SING N N 9 9YB C11 C6 SING Y N 10 9YB C11 C12 SING Y N 11 9YB C22 C21 SING N N 12 9YB C13 N14 SING N N 13 9YB C13 C12 SING N N 14 9YB C6 C3 SING Y N 15 9YB N14 C15 SING N N 16 9YB C21 N20 SING N N 17 9YB C12 C5 DOUB Y N 18 9YB C19 N20 SING Y N 19 9YB C19 C16 DOUB Y N 20 9YB N20 N24 SING Y N 21 9YB C15 C16 SING N N 22 9YB C3 O2 SING N N 23 9YB C3 C4 DOUB Y N 24 9YB C16 C25 SING Y N 25 9YB C5 C4 SING Y N 26 9YB O2 C1 SING N N 27 9YB N24 C25 DOUB Y N 28 9YB C25 C26 SING N N 29 9YB C26 O27 DOUB N N 30 9YB C26 N28 SING N N 31 9YB O39 C37 DOUB N N 32 9YB N28 C29 SING N N 33 9YB C37 C30 SING N N 34 9YB C37 O38 SING N N 35 9YB C29 C30 SING N N 36 9YB C29 C31 SING N N 37 9YB C32 C31 DOUB Y N 38 9YB C32 C33 SING Y N 39 9YB C31 C36 SING Y N 40 9YB C33 C34 DOUB Y N 41 9YB C36 C35 DOUB Y N 42 9YB C34 C35 SING Y N 43 9YB C4 H1 SING N N 44 9YB C5 H2 SING N N 45 9YB C7 H3 SING N N 46 9YB C8 H4 SING N N 47 9YB C9 H5 SING N N 48 9YB C10 H6 SING N N 49 9YB C13 H7 SING N N 50 9YB C13 H8 SING N N 51 9YB C1 H9 SING N N 52 9YB C1 H10 SING N N 53 9YB C1 H11 SING N N 54 9YB C15 H13 SING N N 55 9YB C15 H14 SING N N 56 9YB C17 H15 SING N N 57 9YB C17 H16 SING N N 58 9YB C18 H17 SING N N 59 9YB C18 H18 SING N N 60 9YB C21 H19 SING N N 61 9YB C21 H20 SING N N 62 9YB C22 H21 SING N N 63 9YB C22 H22 SING N N 64 9YB O23 H23 SING N N 65 9YB N28 H24 SING N N 66 9YB C29 H25 SING N N 67 9YB C30 H26 SING N N 68 9YB C30 H27 SING N N 69 9YB O38 H28 SING N N 70 9YB C32 H29 SING N N 71 9YB C33 H30 SING N N 72 9YB C34 H31 SING N N 73 9YB C35 H32 SING N N 74 9YB C36 H33 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9YB InChI InChI 1.03 "InChI=1S/C30H32N4O5/c1-39-27-12-11-21(22-9-5-6-10-23(22)27)18-33-14-13-26-24(19-33)29(32-34(26)15-16-35)30(38)31-25(17-28(36)37)20-7-3-2-4-8-20/h2-12,25,35H,13-19H2,1H3,(H,31,38)(H,36,37)/t25-/m1/s1" 9YB InChIKey InChI 1.03 FEINFPMXJVPOSJ-RUZDIDTESA-N 9YB SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CN2CCc3n(CCO)nc(C(=O)N[C@H](CC(O)=O)c4ccccc4)c3C2)c5ccccc15" 9YB SMILES CACTVS 3.385 "COc1ccc(CN2CCc3n(CCO)nc(C(=O)N[CH](CC(O)=O)c4ccccc4)c3C2)c5ccccc15" 9YB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(c2c1cccc2)CN3CCc4c(c(nn4CCO)C(=O)N[C@H](CC(=O)O)c5ccccc5)C3" 9YB SMILES "OpenEye OEToolkits" 2.0.6 "COc1ccc(c2c1cccc2)CN3CCc4c(c(nn4CCO)C(=O)NC(CC(=O)O)c5ccccc5)C3" # _pdbx_chem_comp_identifier.comp_id 9YB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-[[1-(2-hydroxyethyl)-5-[(4-methoxynaphthalen-1-yl)methyl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-3-yl]carbonylamino]-3-phenyl-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9YB "Create component" 2017-08-01 EBI 9YB "Initial release" 2019-03-06 RCSB ##