data_9YX # _chem_comp.id 9YX _chem_comp.name "(2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-17 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9YX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XEK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9YX OAM O1 O 0 1 N N N 32.801 -34.723 -39.482 4.184 -2.004 1.248 OAM 9YX 1 9YX PAL P1 P 0 1 N N N 31.859 -35.136 -38.345 4.412 -1.020 0.167 PAL 9YX 2 9YX OAO O2 O 0 1 N N N 31.967 -36.564 -37.828 5.809 -0.261 0.418 OAO 9YX 3 9YX OAN O3 O 0 1 N N N 30.476 -34.604 -38.671 4.463 -1.783 -1.251 OAN 9YX 4 9YX OAK O4 O 0 1 N N N 32.354 -34.212 -37.015 3.212 0.053 0.156 OAK 9YX 5 9YX CAJ C1 C 0 1 N N N 32.527 -32.734 -37.257 1.836 -0.320 0.059 CAJ 9YX 6 9YX CAA C2 C 0 1 Y N N 33.338 -32.330 -36.071 0.978 0.919 0.076 CAA 9YX 7 9YX CAB C3 C 0 1 Y N N 32.755 -31.563 -35.101 1.549 2.163 0.275 CAB 9YX 8 9YX NAC N1 N 0 1 Y N N 33.464 -31.117 -34.003 0.807 3.253 0.292 NAC 9YX 9 9YX CAD C4 C 0 1 Y N N 34.765 -31.433 -33.770 -0.499 3.207 0.122 CAD 9YX 10 9YX CAG C5 C 0 1 N N N 35.385 -30.965 -32.523 -1.300 4.483 0.150 CAG 9YX 11 9YX CAE C6 C 0 1 Y N N 35.368 -32.265 -34.713 -1.144 1.996 -0.083 CAE 9YX 12 9YX OAH O5 O 0 1 N N N 36.620 -32.647 -34.521 -2.491 1.953 -0.258 OAH 9YX 13 9YX CAF C7 C 0 1 Y N N 34.699 -32.703 -35.903 -0.391 0.826 -0.112 CAF 9YX 14 9YX CAI C8 C 0 1 N N S 35.311 -33.402 -36.978 -1.050 -0.510 -0.339 CAI 9YX 15 9YX N N2 N 0 1 N N N 36.675 -32.788 -37.280 -2.086 -0.781 0.697 N 9YX 16 9YX SAS S1 S 0 1 N N N 35.707 -35.172 -37.025 -2.080 -0.493 -1.865 SAS 9YX 17 9YX CB C9 C 0 1 N N N 36.978 -35.132 -38.330 -3.244 -1.790 -1.283 CB 9YX 18 9YX CA C10 C 0 1 N N S 37.495 -33.551 -38.271 -3.025 -1.810 0.243 CA 9YX 19 9YX C C11 C 0 1 N N N 38.998 -33.380 -37.882 -4.351 -1.595 0.927 C 9YX 20 9YX OXT O6 O 0 1 N N N 39.286 -32.800 -36.825 -5.350 -2.472 0.745 OXT 9YX 21 9YX O O7 O 0 1 N N N 39.890 -33.792 -38.649 -4.514 -0.632 1.638 O 9YX 22 9YX H1 H1 H 0 1 N N N 32.642 -37.026 -38.311 6.578 -0.847 0.437 H1 9YX 23 9YX H2 H2 H 0 1 N N N 30.502 -34.138 -39.499 4.610 -1.198 -2.007 H2 9YX 24 9YX H3 H3 H 0 1 N N N 33.066 -32.541 -38.196 1.671 -0.863 -0.872 H3 9YX 25 9YX H4 H4 H 0 1 N N N 31.558 -32.214 -37.277 1.571 -0.956 0.903 H4 9YX 26 9YX H5 H5 H 0 1 N N N 31.712 -31.299 -35.196 2.616 2.242 0.418 H5 9YX 27 9YX H6 H6 H 0 1 N N N 34.648 -30.395 -31.938 -1.365 4.893 -0.857 H6 9YX 28 9YX H7 H7 H 0 1 N N N 35.729 -31.830 -31.937 -2.303 4.274 0.523 H7 9YX 29 9YX H8 H8 H 0 1 N N N 36.243 -30.319 -32.760 -0.812 5.204 0.806 H8 9YX 30 9YX H9 H9 H 0 1 N N N 36.939 -32.289 -33.701 -2.770 2.030 -1.181 H9 9YX 31 9YX H10 H10 H 0 1 N N N 34.693 -33.247 -37.875 -0.310 -1.310 -0.373 H10 9YX 32 9YX H11 H11 H 0 1 N N N 37.190 -32.735 -36.424 -2.572 0.066 0.952 H11 9YX 33 9YX H13 H13 H 0 1 N N N 36.548 -35.374 -39.313 -4.272 -1.517 -1.520 H13 9YX 34 9YX H14 H14 H 0 1 N N N 37.800 -35.829 -38.108 -2.992 -2.756 -1.720 H14 9YX 35 9YX H15 H15 H 0 1 N N N 37.345 -33.122 -39.273 -2.638 -2.788 0.529 H15 9YX 36 9YX H16 H16 H 0 1 N N N 40.231 -32.746 -36.740 -6.182 -2.291 1.204 H16 9YX 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9YX OAM PAL DOUB N N 1 9YX OAN PAL SING N N 2 9YX O C DOUB N N 3 9YX PAL OAO SING N N 4 9YX PAL OAK SING N N 5 9YX CB CA SING N N 6 9YX CB SAS SING N N 7 9YX CA C SING N N 8 9YX CA N SING N N 9 9YX C OXT SING N N 10 9YX N CAI SING N N 11 9YX CAJ OAK SING N N 12 9YX CAJ CAA SING N N 13 9YX SAS CAI SING N N 14 9YX CAI CAF SING N N 15 9YX CAA CAF DOUB Y N 16 9YX CAA CAB SING Y N 17 9YX CAF CAE SING Y N 18 9YX CAB NAC DOUB Y N 19 9YX CAE OAH SING N N 20 9YX CAE CAD DOUB Y N 21 9YX NAC CAD SING Y N 22 9YX CAD CAG SING N N 23 9YX OAO H1 SING N N 24 9YX OAN H2 SING N N 25 9YX CAJ H3 SING N N 26 9YX CAJ H4 SING N N 27 9YX CAB H5 SING N N 28 9YX CAG H6 SING N N 29 9YX CAG H7 SING N N 30 9YX CAG H8 SING N N 31 9YX OAH H9 SING N N 32 9YX CAI H10 SING N N 33 9YX N H11 SING N N 34 9YX CB H13 SING N N 35 9YX CB H14 SING N N 36 9YX CA H15 SING N N 37 9YX OXT H16 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9YX InChI InChI 1.03 "InChI=1S/C11H15N2O7PS/c1-5-9(14)8(10-13-7(4-22-10)11(15)16)6(2-12-5)3-20-21(17,18)19/h2,7,10,13-14H,3-4H2,1H3,(H,15,16)(H2,17,18,19)/t7-,10+/m1/s1" 9YX InChIKey InChI 1.03 CXFXHBNEDOKOBZ-XCBNKYQSSA-N 9YX SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H]2N[C@H](CS2)C(O)=O)c1O" 9YX SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH]2N[CH](CS2)C(O)=O)c1O" 9YX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@H]2N[C@H](CS2)C(=O)O)O" 9YX SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C2NC(CS2)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id 9YX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9YX "Create component" 2022-04-17 PDBJ 9YX "Initial release" 2023-04-05 RCSB #