data_9ZN # _chem_comp.id 9ZN _chem_comp.name "(2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-05 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9ZN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9ZN OAV O1 O 0 1 N N N 47.462 -8.085 -17.751 6.159 0.885 0.148 OAV 9ZN 1 9ZN PAU P1 P 0 1 N N N 46.176 -8.506 -16.965 4.642 1.426 0.128 PAU 9ZN 2 9ZN OAX O2 O 0 1 N N N 45.371 -9.163 -18.169 4.380 2.206 1.358 OAX 9ZN 3 9ZN OAW O3 O 0 1 N N N 45.424 -7.425 -16.242 4.425 2.366 -1.161 OAW 9ZN 4 9ZN OAT O4 O 0 1 N N N 46.474 -9.804 -16.041 3.628 0.177 0.058 OAT 9ZN 5 9ZN CAS C1 C 0 1 N N N 47.254 -10.804 -16.660 2.208 0.323 0.131 CAS 9ZN 6 9ZN CAR C2 C 0 1 Y N N 47.403 -11.726 -15.627 1.559 -1.033 0.035 CAR 9ZN 7 9ZN CAM C3 C 0 1 Y N N 48.468 -11.484 -14.777 2.329 -2.170 -0.094 CAM 9ZN 8 9ZN NAN N1 N 0 1 Y N N 48.745 -12.274 -13.709 1.773 -3.364 -0.178 NAN 9ZN 9 9ZN CAJ C4 C 0 1 Y N N 47.979 -13.359 -13.447 0.467 -3.532 -0.144 CAJ 9ZN 10 9ZN CAQ C5 C 0 1 N N N 48.278 -14.207 -12.333 -0.107 -4.922 -0.245 CAQ 9ZN 11 9ZN CAK C6 C 0 1 Y N N 46.906 -13.659 -14.293 -0.387 -2.445 -0.015 CAK 9ZN 12 9ZN OAP O5 O 0 1 N N N 46.183 -14.766 -13.950 -1.732 -2.625 0.021 OAP 9ZN 13 9ZN CAL C7 C 0 1 Y N N 46.548 -12.831 -15.376 0.165 -1.158 0.083 CAL 9ZN 14 9ZN CAO C8 C 0 1 N N N 45.491 -13.090 -16.262 -0.699 0.030 0.226 CAO 9ZN 15 9ZN N N2 N 0 1 N N N 45.196 -14.362 -16.328 -1.984 -0.107 0.268 N 9ZN 16 9ZN CA C9 C 0 1 N N R 44.306 -14.942 -17.289 -2.842 1.072 0.410 CA 9ZN 17 9ZN C C10 C 0 1 N N N 43.697 -16.189 -16.666 -3.660 0.950 1.669 C 9ZN 18 9ZN OXT O6 O 0 1 N N N 42.527 -16.414 -17.016 -3.539 -0.023 2.376 OXT 9ZN 19 9ZN O O7 O 0 1 N N N 44.353 -16.894 -15.849 -4.523 1.921 2.007 O 9ZN 20 9ZN CB C11 C 0 1 N N N 45.240 -15.241 -18.489 -3.777 1.171 -0.798 CB 9ZN 21 9ZN CG2 C12 C 0 1 N N N 44.632 -14.537 -19.714 -4.646 -0.085 -0.874 CG2 9ZN 22 9ZN CG1 C13 C 0 1 N N N 45.567 -16.747 -18.679 -4.673 2.403 -0.649 CG1 9ZN 23 9ZN SG S1 S 0 1 N N N 46.831 -14.550 -18.222 -2.792 1.319 -2.314 SG 9ZN 24 9ZN H1 H1 H 0 1 N N N 47.374 -8.338 -18.662 6.825 1.584 0.190 H1 9ZN 25 9ZN H2 H2 H 0 1 N N N 44.568 -7.314 -16.639 4.581 1.920 -2.004 H2 9ZN 26 9ZN H3 H3 H 0 1 N N N 46.730 -11.247 -17.520 1.939 0.789 1.078 H3 9ZN 27 9ZN H4 H4 H 0 1 N N N 48.227 -10.408 -16.988 1.865 0.949 -0.693 H4 9ZN 28 9ZN H5 H5 H 0 1 N N N 49.104 -10.633 -14.971 3.405 -2.082 -0.127 H5 9ZN 29 9ZN H6 H6 H 0 1 N N N 49.163 -13.822 -11.805 -0.207 -5.347 0.754 H6 9ZN 30 9ZN H7 H7 H 0 1 N N N 47.420 -14.225 -11.645 -1.087 -4.877 -0.720 H7 9ZN 31 9ZN H8 H8 H 0 1 N N N 48.481 -15.227 -12.693 0.557 -5.547 -0.841 H8 9ZN 32 9ZN H9 H9 H 0 1 N N N 46.584 -15.186 -13.198 -2.088 -2.754 0.911 H9 9ZN 33 9ZN H10 H10 H 0 1 N N N 44.979 -12.325 -16.826 -0.258 1.013 0.296 H10 9ZN 34 9ZN H14 H14 H 0 1 N N N 43.516 -14.238 -17.591 -2.223 1.968 0.464 H14 9ZN 35 9ZN H15 H15 H 0 1 N N N 43.814 -17.616 -15.549 -5.025 1.798 2.824 H15 9ZN 36 9ZN H16 H16 H 0 1 N N N 44.440 -13.481 -19.473 -4.008 -0.962 -0.980 H16 9ZN 37 9ZN H17 H17 H 0 1 N N N 45.335 -14.598 -20.558 -5.238 -0.174 0.037 H17 9ZN 38 9ZN H18 H18 H 0 1 N N N 43.687 -15.028 -19.987 -5.312 -0.015 -1.734 H18 9ZN 39 9ZN H19 H19 H 0 1 N N N 45.994 -17.150 -17.749 -5.339 2.474 -1.509 H19 9ZN 40 9ZN H20 H20 H 0 1 N N N 44.645 -17.294 -18.926 -5.264 2.314 0.262 H20 9ZN 41 9ZN H21 H21 H 0 1 N N N 46.293 -16.864 -19.497 -4.053 3.298 -0.595 H21 9ZN 42 9ZN H22 H22 H 0 1 N N N 47.241 -15.211 -17.180 -2.066 0.187 -2.315 H22 9ZN 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9ZN CG2 CB SING N N 1 9ZN CG1 CB SING N N 2 9ZN CB SG SING N N 3 9ZN CB CA SING N N 4 9ZN OAX PAU DOUB N N 5 9ZN OAV PAU SING N N 6 9ZN CA C SING N N 7 9ZN CA N SING N N 8 9ZN OXT C DOUB N N 9 9ZN PAU OAW SING N N 10 9ZN PAU OAT SING N N 11 9ZN C O SING N N 12 9ZN CAS OAT SING N N 13 9ZN CAS CAR SING N N 14 9ZN N CAO DOUB N N 15 9ZN CAO CAL SING N N 16 9ZN CAR CAL SING Y N 17 9ZN CAR CAM DOUB Y N 18 9ZN CAL CAK DOUB Y N 19 9ZN CAM NAN SING Y N 20 9ZN CAK OAP SING N N 21 9ZN CAK CAJ SING Y N 22 9ZN NAN CAJ DOUB Y N 23 9ZN CAJ CAQ SING N N 24 9ZN OAV H1 SING N N 25 9ZN OAW H2 SING N N 26 9ZN CAS H3 SING N N 27 9ZN CAS H4 SING N N 28 9ZN CAM H5 SING N N 29 9ZN CAQ H6 SING N N 30 9ZN CAQ H7 SING N N 31 9ZN CAQ H8 SING N N 32 9ZN OAP H9 SING N N 33 9ZN CAO H10 SING N N 34 9ZN CA H14 SING N N 35 9ZN O H15 SING N N 36 9ZN CG2 H16 SING N N 37 9ZN CG2 H17 SING N N 38 9ZN CG2 H18 SING N N 39 9ZN CG1 H19 SING N N 40 9ZN CG1 H20 SING N N 41 9ZN CG1 H21 SING N N 42 9ZN SG H22 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9ZN InChI InChI 1.03 "InChI=1S/C13H19N2O7PS/c1-7-10(16)9(5-15-11(12(17)18)13(2,3)24)8(4-14-7)6-22-23(19,20)21/h4-5,11,16,24H,6H2,1-3H3,(H,17,18)(H2,19,20,21)/b15-5+/t11-/m1/s1" 9ZN InChIKey InChI 1.03 QCEQCGHUNRWSKE-WFWRNDJQSA-N 9ZN SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@H](C(O)=O)C(C)(C)S)c1O" 9ZN SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](C(O)=O)C(C)(C)S)c1O" 9ZN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@H](C(=O)O)C(C)(C)S)O" 9ZN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(C(=O)O)C(C)(C)S)O" # _pdbx_chem_comp_identifier.comp_id 9ZN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9ZN "Create component" 2022-04-05 PDBJ 9ZN "Initial release" 2023-04-05 RCSB #