data_A0I # _chem_comp.id A0I _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H17 N4 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-17 _chem_comp.pdbx_modified_date 2023-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A0I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PSZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A0I C1 C1 C 0 1 N N N N N N 134.184 129.442 124.867 -7.366 -0.920 -0.710 C1 A0I 1 A0I C2 C2 C 0 1 N N N N N N 135.145 130.040 125.587 -6.436 0.016 -1.010 C2 A0I 2 A0I C3 C3 C 0 1 N N N N N N 135.683 127.970 126.666 -5.054 -0.831 0.691 C3 A0I 3 A0I C4 C4 C 0 1 N N N N N N 133.979 128.050 125.065 -7.106 -1.833 0.333 C4 A0I 4 A0I C5 C5 C 0 1 N N R N N N 136.960 130.008 127.283 -4.258 1.061 -0.614 C5 A0I 5 A0I C6 C6 C 0 1 N N R N N N 138.366 129.421 127.093 -4.035 2.007 0.593 C6 A0I 6 A0I C7 C7 C 0 1 N N S N N N 138.875 130.276 125.930 -2.597 2.522 0.340 C7 A0I 7 A0I C8 C8 C 0 1 N N R N N N 138.326 131.646 126.329 -1.979 1.469 -0.599 C8 A0I 8 A0I C9 C9 C 0 1 N N N N N N 138.268 132.669 125.222 -0.729 0.866 0.045 C9 A0I 9 A0I N1 N1 N 0 1 N N N N N N 135.900 129.338 126.477 -5.274 0.053 -0.299 N1 A0I 10 A0I N2 N2 N 0 1 N N N N N N 134.718 127.357 125.942 -5.960 -1.758 0.999 N2 A0I 11 A0I N3 N3 N 0 1 N N N N N N 133.048 127.398 124.385 -8.034 -2.794 0.660 N3 A0I 12 A0I N4 N4 N 0 1 N N N N N N 139.296 132.482 122.185 2.544 0.236 -0.448 N4 A0I 13 A0I O1 O1 O 0 1 N N N N N N 136.379 127.357 127.484 -4.009 -0.784 1.317 O1 A0I 14 A0I O10 O2 O 0 1 N N N N N N 139.235 134.526 119.521 7.319 -0.785 -0.482 O10 A0I 15 A0I O11 O3 O 0 1 N N N N N N 136.818 131.947 121.744 1.091 -1.523 0.766 O11 A0I 16 A0I O12 O4 O 0 1 N N N N N N 140.291 130.293 125.799 -2.628 3.802 -0.294 O12 A0I 17 A0I O13 O5 O 0 1 N N N N N N 139.123 129.622 128.271 -4.973 3.085 0.577 O13 A0I 18 A0I O2 O6 O 0 1 N N N N N N 137.019 131.355 126.868 -2.967 0.444 -0.802 O2 A0I 19 A0I O3 O7 O 0 1 N N N N N N 137.596 132.113 124.073 -0.097 -0.023 -0.879 O3 A0I 20 A0I O4 O8 O 0 1 N N N N N N 137.440 134.216 122.792 1.529 -1.924 -1.687 O4 A0I 21 A0I O5 O9 O 0 1 N N N N N N 141.854 132.332 122.534 4.254 -1.573 -1.145 O5 A0I 22 A0I O6 O10 O 0 1 N N N N N N 140.545 134.193 123.753 3.827 -1.320 1.330 O6 A0I 23 A0I O7 O11 O 0 1 N N N N N N 140.955 134.237 121.337 5.187 0.483 -0.016 O7 A0I 24 A0I O8 O12 O 0 1 N N N N N N 139.204 136.011 121.578 6.999 0.116 1.854 O8 A0I 25 A0I O9 O13 O 0 1 N N N N N N 141.032 136.251 119.873 7.505 1.713 -0.173 O9 A0I 26 A0I P1 P1 P 0 1 N N N N N N 137.734 132.757 122.612 1.249 -0.835 -0.534 P1 A0I 27 A0I P2 P2 P 0 1 N N N N N N 140.682 133.267 122.581 3.975 -0.574 -0.089 P2 A0I 28 A0I P3 P3 P 0 1 N N N N N N 140.047 135.308 120.532 6.765 0.357 0.279 P3 A0I 29 A0I H1 H1 H 0 1 N N N N N N 133.587 130.000 124.161 -8.296 -0.965 -1.258 H1 A0I 30 A0I H2 H2 H 0 1 N N N N N N 135.323 131.097 125.459 -6.612 0.725 -1.805 H2 A0I 31 A0I H5 H3 H 0 1 N N N N N N 136.696 129.948 128.349 -4.545 1.629 -1.499 H5 A0I 32 A0I H6 H4 H 0 1 N N N N N N 138.309 128.361 126.803 -4.093 1.458 1.533 H6 A0I 33 A0I H7 H5 H 0 1 N N N N N N 138.396 129.947 124.996 -2.040 2.572 1.276 H7 A0I 34 A0I H8 H6 H 0 1 N N N N N N 138.964 132.045 127.132 -1.721 1.929 -1.553 H8 A0I 35 A0I H10 H7 H 0 1 N N N N N N 139.291 132.960 124.941 -0.037 1.665 0.312 H10 A0I 36 A0I H9 H8 H 0 1 N N N N N N 137.718 133.555 125.573 -1.012 0.316 0.942 H9 A0I 37 A0I H3 H9 H 0 1 N N N N N N 132.914 126.418 124.534 -8.871 -2.846 0.172 H3 A0I 38 A0I H4 H10 H 0 1 N N N N N N 132.479 127.885 123.723 -7.852 -3.420 1.378 H4 A0I 39 A0I H11 H11 H 0 1 N N N N N N 139.279 132.518 121.186 2.364 0.968 0.223 H11 A0I 40 A0I H12 H12 H 0 1 N N N N N N 140.597 129.428 125.551 -3.008 4.503 0.253 H12 A0I 41 A0I H13 H13 H 0 1 N N N N N N 138.777 129.076 128.967 -4.873 3.704 1.313 H13 A0I 42 A0I H14 H14 H 0 1 N N N N N N 136.661 134.446 122.299 1.643 -1.543 -2.568 H14 A0I 43 A0I H15 H15 H 0 1 N N N N N N 141.269 134.055 124.352 3.642 -0.725 2.070 H15 A0I 44 A0I H16 H16 H 0 1 N N N N N N 138.285 135.835 121.415 6.660 0.827 2.415 H16 A0I 45 A0I H17 H17 H 0 1 N N N N N N 140.958 136.177 118.929 8.460 1.708 -0.024 H17 A0I 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A0I O10 P3 DOUB N N 1 A0I O9 P3 SING N N 2 A0I P3 O7 SING N N 3 A0I P3 O8 SING N N 4 A0I O7 P2 SING N N 5 A0I O11 P1 DOUB N N 6 A0I N4 P2 SING N N 7 A0I N4 P1 SING N N 8 A0I O5 P2 DOUB N N 9 A0I P2 O6 SING N N 10 A0I P1 O4 SING N N 11 A0I P1 O3 SING N N 12 A0I O3 C9 SING N N 13 A0I N3 C4 SING N N 14 A0I C1 C4 SING N N 15 A0I C1 C2 DOUB N N 16 A0I C4 N2 DOUB N N 17 A0I C9 C8 SING N N 18 A0I C2 N1 SING N N 19 A0I O12 C7 SING N N 20 A0I C7 C8 SING N N 21 A0I C7 C6 SING N N 22 A0I N2 C3 SING N N 23 A0I C8 O2 SING N N 24 A0I N1 C3 SING N N 25 A0I N1 C5 SING N N 26 A0I C3 O1 DOUB N N 27 A0I O2 C5 SING N N 28 A0I C6 C5 SING N N 29 A0I C6 O13 SING N N 30 A0I C1 H1 SING N N 31 A0I C2 H2 SING N N 32 A0I C5 H5 SING N N 33 A0I C6 H6 SING N N 34 A0I C7 H7 SING N N 35 A0I C8 H8 SING N N 36 A0I C9 H10 SING N N 37 A0I C9 H9 SING N N 38 A0I N3 H3 SING N N 39 A0I N3 H4 SING N N 40 A0I N4 H11 SING N N 41 A0I O12 H12 SING N N 42 A0I O13 H13 SING N N 43 A0I O4 H14 SING N N 44 A0I O6 H15 SING N N 45 A0I O8 H16 SING N N 46 A0I O9 H17 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A0I InChI InChI 1.06 "InChI=1S/C9H17N4O13P3/c10-5-1-2-13(9(16)11-5)8-7(15)6(14)4(25-8)3-24-27(17,18)12-28(19,20)26-29(21,22)23/h1-2,4,6-8,14-15H,3H2,(H2,10,11,16)(H2,21,22,23)(H3,12,17,18,19,20)/t4-,6-,7-,8-/m1/s1" A0I InChIKey InChI 1.06 HVZVBWDHTKBLAI-XVFCMESISA-N A0I SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O" A0I SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O" A0I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)O" A0I SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A0I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A0I "Create component" 2023-07-17 PDBE A0I "Initial release" 2023-12-27 RCSB #