data_A1A06 # _chem_comp.id A1A06 _chem_comp.name "(2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 F3 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-05 _chem_comp.pdbx_modified_date 2025-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.668 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9COS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A06 C02 C1 C 0 1 N N N N N N -11.228 -37.109 -10.804 -7.260 -3.430 -0.278 C02 A1A06 1 A1A06 C05 C2 C 0 1 N N N N N N -12.546 -37.942 -10.613 -5.992 -2.969 0.392 C05 A1A06 2 A1A06 C08 C3 C 0 1 N N N N N N -14.031 -35.911 -10.864 -4.223 -1.326 0.724 C08 A1A06 3 A1A06 C09 C4 C 0 1 N N N N N N -14.777 -35.003 -9.783 -3.839 0.031 0.193 C09 A1A06 4 A1A06 C12 C5 C 0 1 N N S N N N -16.735 -34.414 -8.175 -2.356 1.964 0.136 C12 A1A06 5 A1A06 C13 C6 C 0 1 N N N N N N -16.558 -35.027 -6.733 -0.848 2.165 0.296 C13 A1A06 6 A1A06 C15 C7 C 0 1 N N R N N N -14.695 -32.540 -5.824 1.773 1.258 -0.310 C15 A1A06 7 A1A06 C16 C8 C 0 1 N N N N N N -13.648 -32.183 -4.736 2.205 2.639 -0.808 C16 A1A06 8 A1A06 C17 C9 C 0 1 Y N N N N N -13.410 -30.683 -4.454 3.601 2.934 -0.323 C17 A1A06 9 A1A06 C18 C10 C 0 1 Y N N N N N -12.732 -29.847 -5.365 3.798 3.439 0.949 C18 A1A06 10 A1A06 C19 C11 C 0 1 Y N N N N N -12.508 -28.484 -5.108 5.078 3.710 1.394 C19 A1A06 11 A1A06 C20 C12 C 0 1 Y N N N N N -12.961 -27.913 -3.917 6.162 3.475 0.567 C20 A1A06 12 A1A06 C21 C13 C 0 1 Y N N N N N -13.634 -28.717 -2.993 5.964 2.970 -0.704 C21 A1A06 13 A1A06 C22 C14 C 0 1 Y N N N N N -13.854 -30.081 -3.256 4.684 2.695 -1.147 C22 A1A06 14 A1A06 C23 C15 C 0 1 N N N N N N -16.023 -31.696 -5.689 2.633 0.201 -0.954 C23 A1A06 15 A1A06 C26 C16 C 0 1 N N N N N N -17.858 -30.166 -6.717 4.661 -1.147 -1.039 C26 A1A06 16 A1A06 C27 C17 C 0 1 N N N N N N -17.758 -28.875 -5.822 5.950 -1.317 -0.233 C27 A1A06 17 A1A06 C28 C18 C 0 1 N N N N N N -17.909 -27.492 -6.543 6.823 -2.390 -0.886 C28 A1A06 18 A1A06 C29 C19 C 0 1 Y N N N N N -18.579 -27.480 -7.929 8.093 -2.557 -0.092 C29 A1A06 19 A1A06 C30 C20 C 0 1 Y N N N N N -17.871 -27.507 -9.145 8.155 -3.472 0.948 C30 A1A06 20 A1A06 C31 C21 C 0 1 Y N N N N N -18.527 -27.492 -10.391 9.345 -3.592 1.651 C31 A1A06 21 A1A06 C32 C22 C 0 1 Y N N N N N -19.931 -27.448 -10.404 10.420 -2.800 1.295 C32 A1A06 22 A1A06 C34 C23 C 0 1 Y N N N N N -19.984 -27.436 -8.064 9.211 -1.804 -0.394 C34 A1A06 23 A1A06 C35 C24 C 0 1 N N N N N N -18.277 -34.227 -8.531 -3.102 3.047 0.918 C35 A1A06 24 A1A06 C36 C25 C 0 1 Y N N N N N -18.673 -33.015 -9.396 -4.582 2.923 0.661 C36 A1A06 25 A1A06 C37 C26 C 0 1 Y N N N N N -19.599 -32.036 -8.964 -5.360 2.124 1.477 C37 A1A06 26 A1A06 C38 C27 C 0 1 Y N N N N N -19.952 -30.934 -9.760 -6.717 2.010 1.242 C38 A1A06 27 A1A06 C39 C28 C 0 1 Y N N N N N -19.392 -30.778 -11.031 -7.296 2.695 0.190 C39 A1A06 28 A1A06 C40 C29 C 0 1 Y N N N N N -18.477 -31.726 -11.489 -6.518 3.494 -0.626 C40 A1A06 29 A1A06 C41 C30 C 0 1 Y N N N N N -18.132 -32.821 -10.680 -5.161 3.613 -0.387 C41 A1A06 30 A1A06 F01 F1 F 0 1 N N N N N N -10.076 -37.802 -10.650 -7.617 -4.689 0.214 F01 A1A06 31 A1A06 F03 F2 F 0 1 N N N N N N -11.091 -36.067 -9.926 -8.287 -2.517 -0.012 F03 A1A06 32 A1A06 F04 F3 F 0 1 N N N N N N -11.099 -36.540 -12.026 -7.055 -3.510 -1.660 F04 A1A06 33 A1A06 N07 N1 N 0 1 N N N N N N -13.805 -37.355 -10.640 -5.456 -1.774 0.072 N07 A1A06 34 A1A06 N11 N2 N 0 1 N N N N N N -16.023 -35.276 -9.191 -2.730 0.644 0.652 N11 A1A06 35 A1A06 N25 N3 N 0 1 N N N N N N -16.605 -30.998 -6.775 3.825 -0.119 -0.413 N25 A1A06 36 A1A06 N33 N4 N 0 1 Y N N N N N -20.643 -27.421 -9.249 10.324 -1.940 0.300 N33 A1A06 37 A1A06 O06 O1 O 0 1 N N N N N N -12.316 -39.131 -10.435 -5.453 -3.673 1.219 O06 A1A06 38 A1A06 O10 O2 O 0 1 N N N N N N -14.182 -33.972 -9.467 -4.527 0.570 -0.647 O10 A1A06 39 A1A06 O24 O3 O 0 1 N N N N N N -16.580 -31.632 -4.592 2.252 -0.362 -1.959 O24 A1A06 40 A1A06 S14 S1 S 0 1 N N N N N N -15.034 -34.444 -5.784 0.036 0.974 -0.748 S14 A1A06 41 A1A06 H1 H1 H 0 1 N N N N N N -13.038 -35.462 -11.014 -3.424 -2.038 0.516 H1 A1A06 42 A1A06 H2 H2 H 0 1 N N N N N N -14.614 -35.829 -11.793 -4.383 -1.263 1.800 H2 A1A06 43 A1A06 H3 H3 H 0 1 N N N N N N -16.271 -33.417 -8.175 -2.621 2.029 -0.919 H3 A1A06 44 A1A06 H4 H4 H 0 1 N N N N N N -17.447 -34.764 -6.141 -0.583 3.179 -0.005 H4 A1A06 45 A1A06 H5 H5 H 0 1 N N N N N N -16.496 -36.121 -6.835 -0.570 2.012 1.339 H5 A1A06 46 A1A06 H6 H6 H 0 1 N N N N N N -14.258 -32.348 -6.815 1.888 1.210 0.772 H6 A1A06 47 A1A06 H7 H7 H 0 1 N N N N N N -13.976 -32.649 -3.795 2.188 2.654 -1.898 H7 A1A06 48 A1A06 H8 H8 H 0 1 N N N N N N -12.687 -32.619 -5.046 1.519 3.395 -0.424 H8 A1A06 49 A1A06 H9 H9 H 0 1 N N N N N N -12.373 -30.269 -6.292 2.952 3.623 1.594 H9 A1A06 50 A1A06 H10 H10 H 0 1 N N N N N N -11.985 -27.877 -5.832 5.233 4.105 2.387 H10 A1A06 51 A1A06 H11 H11 H 0 1 N N N N N N -12.794 -26.866 -3.713 7.162 3.688 0.915 H11 A1A06 52 A1A06 H12 H12 H 0 1 N N N N N N -13.989 -28.287 -2.068 6.811 2.787 -1.349 H12 A1A06 53 A1A06 H13 H13 H 0 1 N N N N N N -14.374 -30.682 -2.525 4.530 2.296 -2.139 H13 A1A06 54 A1A06 H14 H14 H 0 1 N N N N N N -18.107 -29.853 -7.742 4.906 -0.846 -2.057 H14 A1A06 55 A1A06 H15 H15 H 0 1 N N N N N N -18.668 -30.795 -6.319 4.119 -2.093 -1.060 H15 A1A06 56 A1A06 H16 H16 H 0 1 N N N N N N -18.548 -28.939 -5.059 6.492 -0.371 -0.211 H16 A1A06 57 A1A06 H17 H17 H 0 1 N N N N N N -16.773 -28.887 -5.332 5.705 -1.618 0.786 H17 A1A06 58 A1A06 H18 H18 H 0 1 N N N N N N -16.900 -27.071 -6.662 6.281 -3.336 -0.907 H18 A1A06 59 A1A06 H19 H19 H 0 1 N N N N N N -18.503 -26.841 -5.885 7.068 -2.089 -1.904 H19 A1A06 60 A1A06 H20 H20 H 0 1 N N N N N N -16.792 -27.540 -9.122 7.298 -4.077 1.204 H20 A1A06 61 A1A06 H21 H21 H 0 1 N N N N N N -17.965 -27.514 -11.313 9.429 -4.294 2.467 H21 A1A06 62 A1A06 H22 H22 H 0 1 N N N N N N -20.453 -27.435 -11.349 11.350 -2.887 1.837 H22 A1A06 63 A1A06 H23 H23 H 0 1 N N N N N N -20.575 -27.413 -7.160 9.172 -1.092 -1.205 H23 A1A06 64 A1A06 H24 H24 H 0 1 N N N N N N -18.825 -34.145 -7.581 -2.906 2.926 1.983 H24 A1A06 65 A1A06 H25 H25 H 0 1 N N N N N N -18.602 -35.132 -9.065 -2.758 4.030 0.595 H25 A1A06 66 A1A06 H26 H26 H 0 1 N N N N N N -20.050 -32.140 -7.988 -4.907 1.588 2.299 H26 A1A06 67 A1A06 H27 H27 H 0 1 N N N N N N -20.658 -30.206 -9.389 -7.325 1.385 1.879 H27 A1A06 68 A1A06 H28 H28 H 0 1 N N N N N N -19.664 -29.936 -11.650 -8.357 2.606 0.006 H28 A1A06 69 A1A06 H29 H29 H 0 1 N N N N N N -18.033 -31.618 -12.468 -6.970 4.030 -1.448 H29 A1A06 70 A1A06 H30 H30 H 0 1 N N N N N N -17.423 -33.543 -11.059 -4.553 4.238 -1.024 H30 A1A06 71 A1A06 H31 H31 H 0 1 N N N N N N -14.603 -37.942 -10.500 -5.887 -1.211 -0.590 H31 A1A06 72 A1A06 H32 H32 H 0 1 N N N N N N -16.481 -36.120 -9.469 -2.179 0.213 1.324 H32 A1A06 73 A1A06 H33 H33 H 0 1 N N N N N N -16.142 -31.064 -7.659 4.130 0.331 0.390 H33 A1A06 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A06 F04 C02 SING N N 1 A1A06 C40 C39 DOUB Y N 2 A1A06 C40 C41 SING Y N 3 A1A06 C39 C38 SING Y N 4 A1A06 C08 N07 SING N N 5 A1A06 C08 C09 SING N N 6 A1A06 C02 F01 SING N N 7 A1A06 C02 C05 SING N N 8 A1A06 C02 F03 SING N N 9 A1A06 C41 C36 DOUB Y N 10 A1A06 N07 C05 SING N N 11 A1A06 C05 O06 DOUB N N 12 A1A06 C32 C31 DOUB Y N 13 A1A06 C32 N33 SING Y N 14 A1A06 C31 C30 SING Y N 15 A1A06 C09 O10 DOUB N N 16 A1A06 C09 N11 SING N N 17 A1A06 C38 C37 DOUB Y N 18 A1A06 C36 C37 SING Y N 19 A1A06 C36 C35 SING N N 20 A1A06 N33 C34 DOUB Y N 21 A1A06 N11 C12 SING N N 22 A1A06 C30 C29 DOUB Y N 23 A1A06 C35 C12 SING N N 24 A1A06 C12 C13 SING N N 25 A1A06 C34 C29 SING Y N 26 A1A06 C29 C28 SING N N 27 A1A06 N25 C26 SING N N 28 A1A06 N25 C23 SING N N 29 A1A06 C13 S14 SING N N 30 A1A06 C26 C27 SING N N 31 A1A06 C28 C27 SING N N 32 A1A06 C15 S14 SING N N 33 A1A06 C15 C23 SING N N 34 A1A06 C15 C16 SING N N 35 A1A06 C23 O24 DOUB N N 36 A1A06 C18 C19 DOUB Y N 37 A1A06 C18 C17 SING Y N 38 A1A06 C19 C20 SING Y N 39 A1A06 C16 C17 SING N N 40 A1A06 C17 C22 DOUB Y N 41 A1A06 C20 C21 DOUB Y N 42 A1A06 C22 C21 SING Y N 43 A1A06 C08 H1 SING N N 44 A1A06 C08 H2 SING N N 45 A1A06 C12 H3 SING N N 46 A1A06 C13 H4 SING N N 47 A1A06 C13 H5 SING N N 48 A1A06 C15 H6 SING N N 49 A1A06 C16 H7 SING N N 50 A1A06 C16 H8 SING N N 51 A1A06 C18 H9 SING N N 52 A1A06 C19 H10 SING N N 53 A1A06 C20 H11 SING N N 54 A1A06 C21 H12 SING N N 55 A1A06 C22 H13 SING N N 56 A1A06 C26 H14 SING N N 57 A1A06 C26 H15 SING N N 58 A1A06 C27 H16 SING N N 59 A1A06 C27 H17 SING N N 60 A1A06 C28 H18 SING N N 61 A1A06 C28 H19 SING N N 62 A1A06 C30 H20 SING N N 63 A1A06 C31 H21 SING N N 64 A1A06 C32 H22 SING N N 65 A1A06 C34 H23 SING N N 66 A1A06 C35 H24 SING N N 67 A1A06 C35 H25 SING N N 68 A1A06 C37 H26 SING N N 69 A1A06 C38 H27 SING N N 70 A1A06 C39 H28 SING N N 71 A1A06 C40 H29 SING N N 72 A1A06 C41 H30 SING N N 73 A1A06 N07 H31 SING N N 74 A1A06 N11 H32 SING N N 75 A1A06 N25 H33 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A06 SMILES ACDLabs 12.01 "FC(F)(F)C(=O)NCC(=O)NC(Cc1ccccc1)CSC(Cc1ccccc1)C(=O)NCCCc1cccnc1" A1A06 InChI InChI 1.06 "InChI=1S/C30H33F3N4O3S/c31-30(32,33)29(40)36-20-27(38)37-25(17-22-9-3-1-4-10-22)21-41-26(18-23-11-5-2-6-12-23)28(39)35-16-8-14-24-13-7-15-34-19-24/h1-7,9-13,15,19,25-26H,8,14,16-18,20-21H2,(H,35,39)(H,36,40)(H,37,38)/t25-,26+/m0/s1" A1A06 InChIKey InChI 1.06 DWYGERMVFBUIQJ-IZZNHLLZSA-N A1A06 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)C(=O)NCC(=O)N[C@H](CS[C@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3" A1A06 SMILES CACTVS 3.385 "FC(F)(F)C(=O)NCC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3" A1A06 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)C(F)(F)F" A1A06 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(CSC(Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A06 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide" A1A06 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-3-phenyl-2-[(2~{S})-3-phenyl-2-[2-[2,2,2-tris(fluoranyl)ethanoylamino]ethanoylamino]propyl]sulfanyl-~{N}-(3-pyridin-3-ylpropyl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A06 "Create component" 2024-08-05 RCSB A1A06 "Initial release" 2025-01-08 RCSB #