data_A1A0J # _chem_comp.id A1A0J _chem_comp.name "(3S)-3-(3-methyl-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl)piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-30 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A0J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CUO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A0J N1 N1 N 0 1 N N N N N N 38.509 48.761 -2.072 -1.243 -1.605 -0.245 N1 A1A0J 1 A1A0J N3 N2 N 0 1 N N N N N N 33.485 45.957 -2.903 2.886 0.412 -0.769 N3 A1A0J 2 A1A0J C4 C1 C 0 1 Y N N N N N 37.470 45.578 -3.259 -2.372 1.715 0.331 C4 A1A0J 3 A1A0J C5 C2 C 0 1 Y N N N N N 38.646 44.843 -3.244 -3.750 1.634 0.332 C5 A1A0J 4 A1A0J C6 C3 C 0 1 Y N N N N N 39.840 45.402 -2.830 -4.379 0.417 0.133 C6 A1A0J 5 A1A0J C7 C4 C 0 1 N N N N N N 37.170 49.044 -2.291 -0.052 -0.984 -0.149 C7 A1A0J 6 A1A0J C8 C5 C 0 1 N N S N N N 35.143 47.773 -3.025 0.811 1.335 0.234 C8 A1A0J 7 A1A0J C10 C6 C 0 1 N N N N N N 32.811 46.381 -4.026 3.153 -0.286 0.345 C10 A1A0J 8 A1A0J C13 C7 C 0 1 N N N N N N 39.491 49.752 -1.678 -1.446 -3.036 -0.486 C13 A1A0J 9 A1A0J C1 C8 C 0 1 Y N N N N N 39.934 46.728 -2.444 -3.633 -0.728 -0.066 C1 A1A0J 10 A1A0J C2 C9 C 0 1 Y N N N N N 38.766 47.459 -2.439 -2.248 -0.656 -0.071 C2 A1A0J 11 A1A0J C3 C10 C 0 1 Y N N N N N 37.554 46.894 -2.840 -1.614 0.571 0.130 C3 A1A0J 12 A1A0J N2 N3 N 0 1 N N N N N N 36.577 47.872 -2.723 -0.243 0.330 0.075 N2 A1A0J 13 A1A0J O1 O1 O 0 1 N N N N N N 36.582 50.101 -2.050 1.032 -1.527 -0.249 O1 A1A0J 14 A1A0J C9 C11 C 0 1 N N N N N N 34.579 46.548 -2.330 1.808 1.201 -0.887 C9 A1A0J 15 A1A0J C11 C12 C 0 1 N N N N N N 33.373 47.564 -4.743 2.237 -0.232 1.539 C11 A1A0J 16 A1A0J C12 C13 C 0 1 N N N N N N 34.868 47.768 -4.521 1.534 1.129 1.573 C12 A1A0J 17 A1A0J O2 O2 O 0 1 N N N N N N 35.068 46.077 -1.321 1.632 1.817 -1.916 O2 A1A0J 18 A1A0J O3 O3 O 0 1 N N N N N N 31.828 45.770 -4.399 4.150 -0.974 0.391 O3 A1A0J 19 A1A0J H1 H1 H 0 1 N N N N N N 33.139 45.130 -2.459 3.500 0.347 -1.518 H1 A1A0J 20 A1A0J H2 H2 H 0 1 N N N N N N 36.535 45.145 -3.582 -1.885 2.666 0.487 H2 A1A0J 21 A1A0J H3 H3 H 0 1 N N N N N N 38.628 43.811 -3.563 -4.341 2.525 0.489 H3 A1A0J 22 A1A0J H4 H4 H 0 1 N N N N N N 40.727 44.786 -2.807 -5.458 0.362 0.135 H4 A1A0J 23 A1A0J H5 H5 H 0 1 N N N N N N 34.642 48.655 -2.600 0.370 2.332 0.212 H5 A1A0J 24 A1A0J H6 H6 H 0 1 N N N N N N 38.983 50.699 -1.442 -0.479 -3.530 -0.577 H6 A1A0J 25 A1A0J H7 H7 H 0 1 N N N N N N 40.034 49.397 -0.790 -1.999 -3.469 0.347 H7 A1A0J 26 A1A0J H8 H8 H 0 1 N N N N N N 40.201 49.912 -2.503 -2.012 -3.172 -1.408 H8 A1A0J 27 A1A0J H9 H9 H 0 1 N N N N N N 40.878 47.169 -2.160 -4.126 -1.676 -0.221 H9 A1A0J 28 A1A0J H10 H10 H 0 1 N N N N N N 32.845 48.464 -4.394 1.492 -1.025 1.466 H10 A1A0J 29 A1A0J H11 H11 H 0 1 N N N N N N 33.198 47.431 -5.821 2.821 -0.363 2.450 H11 A1A0J 30 A1A0J H12 H12 H 0 1 N N N N N N 35.428 46.950 -4.997 2.271 1.918 1.720 H12 A1A0J 31 A1A0J H13 H13 H 0 1 N N N N N N 35.179 48.728 -4.958 0.808 1.146 2.386 H13 A1A0J 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A0J C11 C12 SING N N 1 A1A0J C11 C10 SING N N 2 A1A0J C12 C8 SING N N 3 A1A0J O3 C10 DOUB N N 4 A1A0J C10 N3 SING N N 5 A1A0J C4 C5 DOUB Y N 6 A1A0J C4 C3 SING Y N 7 A1A0J C5 C6 SING Y N 8 A1A0J C8 N2 SING N N 9 A1A0J C8 C9 SING N N 10 A1A0J N3 C9 SING N N 11 A1A0J C3 N2 SING N N 12 A1A0J C3 C2 DOUB Y N 13 A1A0J C6 C1 DOUB Y N 14 A1A0J N2 C7 SING N N 15 A1A0J C1 C2 SING Y N 16 A1A0J C2 N1 SING N N 17 A1A0J C9 O2 DOUB N N 18 A1A0J C7 N1 SING N N 19 A1A0J C7 O1 DOUB N N 20 A1A0J N1 C13 SING N N 21 A1A0J N3 H1 SING N N 22 A1A0J C4 H2 SING N N 23 A1A0J C5 H3 SING N N 24 A1A0J C6 H4 SING N N 25 A1A0J C8 H5 SING N N 26 A1A0J C13 H6 SING N N 27 A1A0J C13 H7 SING N N 28 A1A0J C13 H8 SING N N 29 A1A0J C1 H9 SING N N 30 A1A0J C11 H10 SING N N 31 A1A0J C11 H11 SING N N 32 A1A0J C12 H12 SING N N 33 A1A0J C12 H13 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A0J SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N1c2ccccc2N(C)C1=O" A1A0J InChI InChI 1.06 "InChI=1S/C13H13N3O3/c1-15-8-4-2-3-5-9(8)16(13(15)19)10-6-7-11(17)14-12(10)18/h2-5,10H,6-7H2,1H3,(H,14,17,18)/t10-/m0/s1" A1A0J InChIKey InChI 1.06 VFDZUWPTOYTMAL-JTQLQIEISA-N A1A0J SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N([C@H]2CCC(=O)NC2=O)c3ccccc13" A1A0J SMILES CACTVS 3.385 "CN1C(=O)N([CH]2CCC(=O)NC2=O)c3ccccc13" A1A0J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2N(C1=O)[C@H]3CCC(=O)NC3=O" A1A0J SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2N(C1=O)C3CCC(=O)NC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A0J "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-(3-methyl-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl)piperidine-2,6-dione" A1A0J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-(3-methyl-2-oxidanylidene-benzimidazol-1-yl)piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A0J "Create component" 2024-07-30 RCSB A1A0J "Initial release" 2024-08-28 RCSB #