data_A1A0M # _chem_comp.id A1A0M _chem_comp.name "9-{[(2M)-5-[(3R)-3-amino-3-(pyridin-2-yl)piperidin-1-yl]-2-(3,4-difluorophenyl)pyridin-4-yl]methyl}-9H-purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H25 F2 N9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-30 _chem_comp.pdbx_modified_date 2025-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 513.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A0M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CVD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A0M C1 C1 C 0 1 Y N N N N N 14.706 -7.275 -4.512 2.247 5.079 0.344 C1 A1A0M 1 A1A0M N1 N1 N 0 1 N N N N N N 13.781 -7.663 -5.381 2.058 6.235 1.081 N1 A1A0M 2 A1A0M C2 C2 C 0 1 Y N N N N N 16.908 -7.278 -3.743 3.639 3.656 -0.823 C2 A1A0M 3 A1A0M N2 N2 N 0 1 Y N N N N N 15.971 -7.664 -4.717 3.449 4.760 -0.124 N2 A1A0M 4 A1A0M C3 C3 C 0 1 Y N N N N N 15.178 -6.181 -2.538 1.426 3.053 -0.674 C3 A1A0M 5 A1A0M N3 N3 N 0 1 Y N N N N N 16.469 -6.526 -2.642 2.664 2.815 -1.096 N3 A1A0M 6 A1A0M C4 C4 C 0 1 Y N N N N N 14.310 -6.548 -3.474 1.173 4.212 0.079 C4 A1A0M 7 A1A0M N4 N4 N 0 1 Y N N N N N 14.544 -5.401 -1.672 0.224 2.402 -0.784 N4 A1A0M 8 A1A0M C5 C5 C 0 1 Y N N N N N 13.291 -5.253 -2.085 -0.705 3.146 -0.118 C5 A1A0M 9 A1A0M N5 N5 N 0 1 Y N N N N N 13.145 -5.976 -3.190 -0.146 4.208 0.386 N5 A1A0M 10 A1A0M C6 C6 C 0 1 N N N N N N 15.138 -4.747 -0.485 -0.016 1.134 -1.476 C6 A1A0M 11 A1A0M N6 N6 N 0 1 Y N N N N N 14.414 -0.757 -1.304 0.849 -2.099 1.148 N6 A1A0M 12 A1A0M C7 C7 C 0 1 Y N N N N N 15.080 -3.366 -0.641 0.294 -0.012 -0.548 C7 A1A0M 13 A1A0M N7 N7 N 0 1 N N N N N N 13.913 -3.113 1.417 -1.930 0.104 0.402 N7 A1A0M 14 A1A0M C8 C8 C 0 1 Y N N N N N 15.500 -2.798 -1.838 1.535 -0.621 -0.566 C8 A1A0M 15 A1A0M N8 N8 N 0 1 N N N N N N 14.603 -5.751 2.640 -4.302 0.835 -1.048 N8 A1A0M 16 A1A0M C9 C9 C 0 1 Y N N N N N 15.119 -1.503 -2.168 1.786 -1.678 0.307 C9 A1A0M 17 A1A0M N9 N9 N 0 1 Y N N N N N 15.732 -5.785 4.864 -5.105 -2.467 -0.326 N9 A1A0M 18 A1A0M C10 C10 C 0 1 Y N N N N N 14.036 -1.279 -0.061 -0.343 -1.541 1.191 C10 A1A0M 19 A1A0M C11 C11 C 0 1 Y N N N N N 14.353 -2.595 0.262 -0.663 -0.482 0.350 C11 A1A0M 20 A1A0M C12 C12 C 0 1 N N N N N N 14.858 -3.311 2.542 -2.977 -0.878 0.095 C12 A1A0M 21 A1A0M C13 C13 C 0 1 N N R N N N 14.432 -4.499 3.389 -4.333 -0.174 0.019 C13 A1A0M 22 A1A0M C14 C14 C 0 1 N N N N N N 12.981 -4.326 3.812 -4.624 0.509 1.359 C14 A1A0M 23 A1A0M C15 C15 C 0 1 N N N N N N 12.104 -4.319 2.572 -3.494 1.491 1.678 C15 A1A0M 24 A1A0M C16 C16 C 0 1 N N N N N N 12.464 -3.123 1.708 -2.163 0.738 1.706 C16 A1A0M 25 A1A0M C17 C17 C 0 1 Y N N N N N 15.247 -4.587 4.512 -5.411 -1.185 -0.276 C17 A1A0M 26 A1A0M C18 C18 C 0 1 Y N N N N N 15.321 -1.036 -3.461 3.113 -2.340 0.296 C18 A1A0M 27 A1A0M C19 C19 C 0 1 Y N N N N N 16.614 -0.838 -3.933 3.373 -3.398 1.165 C19 A1A0M 28 A1A0M C20 C20 C 0 1 Y N N N N N 16.821 -0.435 -5.245 4.609 -4.012 1.153 C20 A1A0M 29 A1A0M C21 C21 C 0 1 Y N N N N N 14.443 -0.434 -5.621 5.336 -2.530 -0.593 C21 A1A0M 30 A1A0M C22 C22 C 0 1 Y N N N N N 14.236 -0.826 -4.304 4.101 -1.910 -0.587 C22 A1A0M 31 A1A0M C23 C23 C 0 1 Y N N N N N 15.733 -0.246 -6.093 5.591 -3.578 0.278 C23 A1A0M 32 A1A0M C24 C24 C 0 1 Y N N N N N 15.614 -3.443 5.211 -6.708 -0.759 -0.491 C24 A1A0M 33 A1A0M C25 C25 C 0 1 Y N N N N N 16.507 -3.535 6.274 -7.691 -1.698 -0.762 C25 A1A0M 34 A1A0M C26 C26 C 0 1 Y N N N N N 17.028 -4.773 6.629 -7.331 -3.036 -0.806 C26 A1A0M 35 A1A0M C27 C27 C 0 1 Y N N N N N 16.629 -5.907 5.931 -6.014 -3.388 -0.580 C27 A1A0M 36 A1A0M F1 F1 F 0 1 N N N N N N 13.389 -0.245 -6.427 6.295 -2.114 -1.449 F1 A1A0M 37 A1A0M F2 F2 F 0 1 N N N N N N 15.946 0.111 -7.366 6.800 -4.182 0.270 F2 A1A0M 38 A1A0M H01 H1 H 0 1 N N N N N N 14.206 -8.219 -6.095 1.176 6.455 1.421 H01 A1A0M 39 A1A0M H02 H2 H 0 1 N N N N N N 13.085 -8.203 -4.908 2.807 6.825 1.258 H02 A1A0M 40 A1A0M H03 H3 H 0 1 N N N N N N 17.947 -7.555 -3.840 4.634 3.432 -1.181 H03 A1A0M 41 A1A0M H04 H4 H 0 1 N N N N N N 12.529 -4.654 -1.609 -1.751 2.892 -0.025 H04 A1A0M 42 A1A0M H05 H5 H 0 1 N N N N N N 14.576 -5.039 0.414 -1.060 1.080 -1.784 H05 A1A0M 43 A1A0M H06 H6 H 0 1 N N N N N N 16.187 -5.061 -0.380 0.626 1.073 -2.355 H06 A1A0M 44 A1A0M H07 H7 H 0 1 N N N N N N 16.124 -3.365 -2.513 2.301 -0.283 -1.249 H07 A1A0M 45 A1A0M H09 H8 H 0 1 N N N N N N 14.319 -6.522 3.210 -5.187 1.315 -1.119 H09 A1A0M 46 A1A0M H08 H9 H 0 1 N N N N N N 14.042 -5.724 1.813 -3.547 1.489 -0.906 H08 A1A0M 47 A1A0M H10 H11 H 0 1 N N N N N N 13.500 -0.662 0.645 -1.080 -1.910 1.889 H10 A1A0M 48 A1A0M H11 H12 H 0 1 N N N N N N 15.866 -3.495 2.141 -2.760 -1.353 -0.862 H11 A1A0M 49 A1A0M H12 H13 H 0 1 N N N N N N 14.872 -2.406 3.167 -3.005 -1.636 0.878 H12 A1A0M 50 A1A0M H14 H14 H 0 1 N N N N N N 12.865 -3.375 4.352 -5.569 1.048 1.295 H14 A1A0M 51 A1A0M H13 H15 H 0 1 N N N N N N 12.686 -5.158 4.468 -4.687 -0.244 2.145 H13 A1A0M 52 A1A0M H16 H16 H 0 1 N N N N N N 11.047 -4.252 2.870 -3.458 2.266 0.912 H16 A1A0M 53 A1A0M H15 H17 H 0 1 N N N N N N 12.266 -5.246 2.002 -3.675 1.949 2.651 H15 A1A0M 54 A1A0M H18 H18 H 0 1 N N N N N N 12.195 -2.198 2.239 -2.194 -0.027 2.482 H18 A1A0M 55 A1A0M H17 H19 H 0 1 N N N N N N 11.905 -3.178 0.762 -1.354 1.437 1.919 H17 A1A0M 56 A1A0M H19 H20 H 0 1 N N N N N N 17.458 -0.998 -3.278 2.608 -3.737 1.848 H19 A1A0M 57 A1A0M H20 H21 H 0 1 N N N N N N 17.825 -0.268 -5.608 4.810 -4.832 1.827 H20 A1A0M 58 A1A0M H21 H22 H 0 1 N N N N N N 13.231 -0.968 -3.935 3.902 -1.094 -1.266 H21 A1A0M 59 A1A0M H22 H23 H 0 1 N N N N N N 15.206 -2.483 4.929 -6.952 0.292 -0.449 H22 A1A0M 60 A1A0M H23 H24 H 0 1 N N N N N N 16.794 -2.649 6.820 -8.713 -1.394 -0.934 H23 A1A0M 61 A1A0M H24 H25 H 0 1 N N N N N N 17.737 -4.854 7.440 -8.072 -3.795 -1.013 H24 A1A0M 62 A1A0M H25 H26 H 0 1 N N N N N N 17.010 -6.878 6.211 -5.726 -4.428 -0.613 H25 A1A0M 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A0M F2 C23 SING N N 1 A1A0M F1 C21 SING N N 2 A1A0M C23 C21 DOUB Y N 3 A1A0M C23 C20 SING Y N 4 A1A0M C21 C22 SING Y N 5 A1A0M N1 C1 SING N N 6 A1A0M C20 C19 DOUB Y N 7 A1A0M N2 C1 DOUB Y N 8 A1A0M N2 C2 SING Y N 9 A1A0M C1 C4 SING Y N 10 A1A0M C22 C18 DOUB Y N 11 A1A0M C19 C18 SING Y N 12 A1A0M C2 N3 DOUB Y N 13 A1A0M C4 N5 SING Y N 14 A1A0M C4 C3 DOUB Y N 15 A1A0M C18 C9 SING N N 16 A1A0M N5 C5 DOUB Y N 17 A1A0M N3 C3 SING Y N 18 A1A0M C3 N4 SING Y N 19 A1A0M C9 C8 DOUB Y N 20 A1A0M C9 N6 SING Y N 21 A1A0M C5 N4 SING Y N 22 A1A0M C8 C7 SING Y N 23 A1A0M N4 C6 SING N N 24 A1A0M N6 C10 DOUB Y N 25 A1A0M C7 C6 SING N N 26 A1A0M C7 C11 DOUB Y N 27 A1A0M C10 C11 SING Y N 28 A1A0M C11 N7 SING N N 29 A1A0M N7 C16 SING N N 30 A1A0M N7 C12 SING N N 31 A1A0M C16 C15 SING N N 32 A1A0M C12 C13 SING N N 33 A1A0M C15 C14 SING N N 34 A1A0M N8 C13 SING N N 35 A1A0M C13 C14 SING N N 36 A1A0M C13 C17 SING N N 37 A1A0M C17 N9 DOUB Y N 38 A1A0M C17 C24 SING Y N 39 A1A0M N9 C27 SING Y N 40 A1A0M C24 C25 DOUB Y N 41 A1A0M C27 C26 DOUB Y N 42 A1A0M C25 C26 SING Y N 43 A1A0M N1 H01 SING N N 44 A1A0M N1 H02 SING N N 45 A1A0M C2 H03 SING N N 46 A1A0M C5 H04 SING N N 47 A1A0M C6 H05 SING N N 48 A1A0M C6 H06 SING N N 49 A1A0M C8 H07 SING N N 50 A1A0M N8 H09 SING N N 51 A1A0M N8 H08 SING N N 52 A1A0M C10 H10 SING N N 53 A1A0M C12 H11 SING N N 54 A1A0M C12 H12 SING N N 55 A1A0M C14 H14 SING N N 56 A1A0M C14 H13 SING N N 57 A1A0M C15 H16 SING N N 58 A1A0M C15 H15 SING N N 59 A1A0M C16 H18 SING N N 60 A1A0M C16 H17 SING N N 61 A1A0M C19 H19 SING N N 62 A1A0M C20 H20 SING N N 63 A1A0M C22 H21 SING N N 64 A1A0M C24 H22 SING N N 65 A1A0M C25 H23 SING N N 66 A1A0M C26 H24 SING N N 67 A1A0M C27 H25 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A0M SMILES ACDLabs 12.01 "Fc1ccc(cc1F)c1cc(Cn2cnc3c(N)ncnc32)c(cn1)N1CCCC(N)(C1)c1ccccn1" A1A0M InChI InChI 1.06 "InChI=1S/C27H25F2N9/c28-19-6-5-17(10-20(19)29)21-11-18(13-38-16-36-24-25(30)34-15-35-26(24)38)22(12-33-21)37-9-3-7-27(31,14-37)23-4-1-2-8-32-23/h1-2,4-6,8,10-12,15-16H,3,7,9,13-14,31H2,(H2,30,34,35)/t27-/m1/s1" A1A0M InChIKey InChI 1.06 FXAXMDGEXGUYBN-HHHXNRCGSA-N A1A0M SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(Cc3cc(ncc3N4CCC[C@@](N)(C4)c5ccccn5)c6ccc(F)c(F)c6)cnc12" A1A0M SMILES CACTVS 3.385 "Nc1ncnc2n(Cc3cc(ncc3N4CCC[C](N)(C4)c5ccccn5)c6ccc(F)c(F)c6)cnc12" A1A0M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)[C@]2(CCCN(C2)c3cnc(cc3Cn4cnc5c4ncnc5N)c6ccc(c(c6)F)F)N" A1A0M SMILES "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)C2(CCCN(C2)c3cnc(cc3Cn4cnc5c4ncnc5N)c6ccc(c(c6)F)F)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A0M "SYSTEMATIC NAME" ACDLabs 12.01 "9-{[(2M)-5-[(3R)-3-amino-3-(pyridin-2-yl)piperidin-1-yl]-2-(3,4-difluorophenyl)pyridin-4-yl]methyl}-9H-purin-6-amine" A1A0M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9-[[5-[(3~{R})-3-azanyl-3-pyridin-2-yl-piperidin-1-yl]-2-[3,4-bis(fluoranyl)phenyl]pyridin-4-yl]methyl]purin-6-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A0M "Create component" 2024-07-30 RCSB A1A0M "Initial release" 2025-04-30 RCSB #