data_A1A0T # _chem_comp.id A1A0T _chem_comp.name "[(3R)-1-cyclopentylpiperidin-3-yl](6-methoxynaphthalen-2-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-02 _chem_comp.pdbx_modified_date 2025-04-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.455 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A0T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CYB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A0T C10 C1 C 0 1 N N N N N N -27.612 -19.809 39.728 5.207 -0.453 -0.185 C10 A1A0T 1 A1A0T C11 C2 C 0 1 N N N N N N -27.434 -19.269 38.310 6.400 0.264 0.471 C11 A1A0T 2 A1A0T C12 C3 C 0 1 N N N N N N -28.719 -19.634 37.623 6.924 -0.674 1.577 C12 A1A0T 3 A1A0T C13 C4 C 0 1 N N N N N N -29.117 -20.948 38.190 6.452 -2.082 1.136 C13 A1A0T 4 A1A0T C14 C5 C 0 1 N N N N N N -28.466 -21.072 39.562 5.048 -1.802 0.545 C14 A1A0T 5 A1A0T C15 C6 C 0 1 N N N N N N -25.433 -18.847 40.528 4.173 1.701 -0.575 C15 A1A0T 6 A1A0T C16 C7 C 0 1 N N N N N N -24.101 -19.155 41.163 2.940 2.553 -0.265 C16 A1A0T 7 A1A0T C18 C8 C 0 1 Y N N N N N -23.330 -22.838 43.930 -2.056 -0.628 -1.037 C18 A1A0T 8 A1A0T C19 C9 C 0 1 Y N N N N N -22.518 -23.878 44.408 -3.339 -0.442 -0.506 C19 A1A0T 9 A1A0T C20 C10 C 0 1 Y N N N N N -21.223 -24.131 43.909 -4.461 -1.059 -1.090 C20 A1A0T 10 A1A0T C21 C11 C 0 1 Y N N N N N -20.467 -25.156 44.386 -5.696 -0.864 -0.556 C21 A1A0T 11 A1A0T N N1 N 0 1 N N N N N N -26.297 -20.074 40.441 3.988 0.352 -0.027 N A1A0T 12 A1A0T C C12 C 0 1 N N N N N N -20.631 -27.910 46.653 -8.192 -0.544 0.419 C A1A0T 13 A1A0T O O1 O 0 1 N N N N N N -20.136 -27.022 45.713 -7.117 0.124 1.082 O A1A0T 14 A1A0T C1 C13 C 0 1 Y N N N N N -20.977 -25.991 45.368 -5.871 -0.054 0.571 C1 A1A0T 15 A1A0T C17 C14 C 0 1 N N N N N N -24.279 -19.739 42.565 1.703 1.896 -0.884 C17 A1A0T 16 A1A0T C2 C15 C 0 1 Y N N N N N -22.228 -25.794 45.900 -4.795 0.565 1.167 C2 A1A0T 17 A1A0T C3 C16 C 0 1 Y N N N N N -23.020 -24.715 45.431 -3.509 0.381 0.638 C3 A1A0T 18 A1A0T C4 C17 C 0 1 Y N N N N N -24.324 -24.462 45.940 -2.390 1.000 1.225 C4 A1A0T 19 A1A0T C5 C18 C 0 1 Y N N N N N -25.075 -23.448 45.439 -1.154 0.812 0.699 C5 A1A0T 20 A1A0T C6 C19 C 0 1 Y N N N N N -24.596 -22.613 44.430 -0.970 -0.004 -0.435 C6 A1A0T 21 A1A0T C7 C20 C 0 1 N N N N N N -25.431 -21.511 43.906 0.379 -0.200 -0.982 C7 A1A0T 22 A1A0T C8 C21 C 0 1 N N R N N N -25.189 -20.977 42.514 1.561 0.475 -0.333 C8 A1A0T 23 A1A0T C9 C22 C 0 1 N N N N N N -26.509 -20.635 41.835 2.834 -0.317 -0.642 C9 A1A0T 24 A1A0T O1 O2 O 0 1 N N N N N N -26.341 -21.060 44.577 0.543 -0.904 -1.956 O1 A1A0T 25 A1A0T H10 H1 H 0 1 N N N N N N -28.186 -19.075 40.312 5.409 -0.621 -1.243 H10 A1A0T 26 A1A0T H11 H2 H 0 1 N N N N N N -27.292 -18.178 38.321 7.181 0.443 -0.268 H11 A1A0T 27 A1A0T H12 H3 H 0 1 N N N N N N -26.576 -19.746 37.814 6.074 1.209 0.907 H12 A1A0T 28 A1A0T H14 H4 H 0 1 N N N N N N -29.492 -18.878 37.827 8.012 -0.635 1.627 H14 A1A0T 29 A1A0T H13 H5 H 0 1 N N N N N N -28.564 -19.716 36.537 6.487 -0.410 2.541 H13 A1A0T 30 A1A0T H15 H6 H 0 1 N N N N N N -30.211 -20.999 38.288 7.117 -2.491 0.375 H15 A1A0T 31 A1A0T H16 H7 H 0 1 N N N N N N -28.769 -21.760 37.535 6.384 -2.753 1.992 H16 A1A0T 32 A1A0T H17 H8 H 0 1 N N N N N N -29.234 -21.123 40.348 4.308 -1.720 1.342 H17 A1A0T 33 A1A0T H18 H9 H 0 1 N N N N N N -27.834 -21.971 39.608 4.767 -2.586 -0.159 H18 A1A0T 34 A1A0T H19 H10 H 0 1 N N N N N N -25.264 -18.456 39.514 4.310 1.640 -1.655 H19 A1A0T 35 A1A0T H20 H11 H 0 1 N N N N N N -25.950 -18.087 41.132 5.054 2.159 -0.123 H20 A1A0T 36 A1A0T H21 H12 H 0 1 N N N N N N -23.565 -19.883 40.537 2.811 2.626 0.815 H21 A1A0T 37 A1A0T H22 H13 H 0 1 N N N N N N -23.514 -18.228 41.232 3.071 3.550 -0.685 H22 A1A0T 38 A1A0T H25 H14 H 0 1 N N N N N N -22.953 -22.195 43.148 -1.911 -1.255 -1.904 H25 A1A0T 39 A1A0T H26 H15 H 0 1 N N N N N N -20.823 -23.497 43.131 -4.342 -1.687 -1.961 H26 A1A0T 40 A1A0T H27 H16 H 0 1 N N N N N N -19.471 -25.319 44.001 -6.553 -1.340 -1.009 H27 A1A0T 41 A1A0T H1 H18 H 0 1 N N N N N N -19.881 -28.689 46.853 -8.019 -1.619 0.439 H1 A1A0T 42 A1A0T H3 H19 H 0 1 N N N N N N -20.856 -27.370 47.585 -9.129 -0.317 0.928 H3 A1A0T 43 A1A0T H2 H20 H 0 1 N N N N N N -21.550 -28.376 46.268 -8.249 -0.203 -0.615 H2 A1A0T 44 A1A0T H24 H21 H 0 1 N N N N N N -23.296 -20.027 42.966 0.817 2.476 -0.629 H24 A1A0T 45 A1A0T H23 H22 H 0 1 N N N N N N -24.734 -18.981 43.219 1.815 1.858 -1.967 H23 A1A0T 46 A1A0T H4 H23 H 0 1 N N N N N N -22.605 -26.454 46.667 -4.941 1.189 2.037 H4 A1A0T 47 A1A0T H5 H24 H 0 1 N N N N N N -24.720 -25.081 46.731 -2.515 1.627 2.096 H5 A1A0T 48 A1A0T H6 H25 H 0 1 N N N N N N -26.068 -23.284 45.831 -0.301 1.291 1.156 H6 A1A0T 49 A1A0T H7 H26 H 0 1 N N N N N N -24.683 -21.754 41.922 1.409 0.515 0.745 H7 A1A0T 50 A1A0T H9 H27 H 0 1 N N N N N N -27.119 -21.547 41.763 2.976 -0.369 -1.721 H9 A1A0T 51 A1A0T H8 H28 H 0 1 N N N N N N -27.039 -19.887 42.443 2.741 -1.325 -0.239 H8 A1A0T 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A0T C O SING N N 1 A1A0T O C1 SING N N 2 A1A0T C1 C2 DOUB Y N 3 A1A0T C2 C3 SING Y N 4 A1A0T C3 C4 DOUB Y N 5 A1A0T C4 C5 SING Y N 6 A1A0T C5 C6 DOUB Y N 7 A1A0T C6 C7 SING N N 8 A1A0T C8 C7 SING N N 9 A1A0T C8 C9 SING N N 10 A1A0T C9 N SING N N 11 A1A0T C10 N SING N N 12 A1A0T C10 C11 SING N N 13 A1A0T C11 C12 SING N N 14 A1A0T C12 C13 SING N N 15 A1A0T C13 C14 SING N N 16 A1A0T C14 C10 SING N N 17 A1A0T N C15 SING N N 18 A1A0T C15 C16 SING N N 19 A1A0T C16 C17 SING N N 20 A1A0T C17 C8 SING N N 21 A1A0T C7 O1 DOUB N N 22 A1A0T C18 C6 SING Y N 23 A1A0T C19 C18 DOUB Y N 24 A1A0T C3 C19 SING Y N 25 A1A0T C20 C19 SING Y N 26 A1A0T C21 C20 DOUB Y N 27 A1A0T C1 C21 SING Y N 28 A1A0T C10 H10 SING N N 29 A1A0T C11 H11 SING N N 30 A1A0T C11 H12 SING N N 31 A1A0T C12 H14 SING N N 32 A1A0T C12 H13 SING N N 33 A1A0T C13 H15 SING N N 34 A1A0T C13 H16 SING N N 35 A1A0T C14 H17 SING N N 36 A1A0T C14 H18 SING N N 37 A1A0T C15 H19 SING N N 38 A1A0T C15 H20 SING N N 39 A1A0T C16 H21 SING N N 40 A1A0T C16 H22 SING N N 41 A1A0T C18 H25 SING N N 42 A1A0T C20 H26 SING N N 43 A1A0T C21 H27 SING N N 44 A1A0T C H1 SING N N 45 A1A0T C H3 SING N N 46 A1A0T C H2 SING N N 47 A1A0T C17 H24 SING N N 48 A1A0T C17 H23 SING N N 49 A1A0T C2 H4 SING N N 50 A1A0T C4 H5 SING N N 51 A1A0T C5 H6 SING N N 52 A1A0T C8 H7 SING N N 53 A1A0T C9 H9 SING N N 54 A1A0T C9 H8 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A0T SMILES ACDLabs 12.01 "COc1ccc2cc(ccc2c1)C(=O)C1CCCN(C1)C1CCCC1" A1A0T InChI InChI 1.06 "InChI=1S/C22H27NO2/c1-25-21-11-10-16-13-18(9-8-17(16)14-21)22(24)19-5-4-12-23(15-19)20-6-2-3-7-20/h8-11,13-14,19-20H,2-7,12,15H2,1H3/t19-/m1/s1" A1A0T InChIKey InChI 1.06 JNSVKSRNLAOUJI-LJQANCHMSA-N A1A0T SMILES_CANONICAL CACTVS 3.385 "COc1ccc2cc(ccc2c1)C(=O)[C@@H]3CCCN(C3)C4CCCC4" A1A0T SMILES CACTVS 3.385 "COc1ccc2cc(ccc2c1)C(=O)[CH]3CCCN(C3)C4CCCC4" A1A0T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2cc(ccc2c1)C(=O)[C@@H]3CCCN(C3)C4CCCC4" A1A0T SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2cc(ccc2c1)C(=O)C3CCCN(C3)C4CCCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A0T "SYSTEMATIC NAME" ACDLabs 12.01 "[(3R)-1-cyclopentylpiperidin-3-yl](6-methoxynaphthalen-2-yl)methanone" A1A0T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-1-cyclopentylpiperidin-3-yl]-(6-methoxynaphthalen-2-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A0T "Create component" 2024-08-02 RCSB A1A0T "Initial release" 2025-04-09 RCSB #