data_A1A1K # _chem_comp.id A1A1K _chem_comp.name "(4S,5aS,8S,8aR)-4-(2-methylpropyl)-N-[(1R,5Z,7R,8R,9R,10R,11S,12R)-10,11,12-trihydroxy-7-methyl-13-oxa-2-selenabicyclo[7.3.1]tridec-5-en-8-yl]octahydro-2H-oxepino[2,3-c]pyrrole-8-carboxamide (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N2 O6 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-08 _chem_comp.pdbx_modified_date 2025-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.571 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A1K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D0I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A1K OAA O1 O 0 1 N N N N N N 77.532 -58.270 -6.722 3.310 0.070 -1.064 OAA A1A1K 1 A1A1K CAF C1 C 0 1 N N R N N N 76.398 -58.750 -5.967 4.154 -0.357 0.026 CAF A1A1K 2 A1A1K CAK C2 C 0 1 N N R N N N 79.943 -57.942 -6.953 1.046 0.114 -0.297 CAK A1A1K 3 A1A1K CAM C3 C 0 1 N N R N N N 79.599 -56.497 -7.025 0.722 1.397 -1.057 CAM A1A1K 4 A1A1K CAN C4 C 0 1 N N N N N N 80.543 -55.803 -8.004 1.718 1.551 -2.208 CAN A1A1K 5 A1A1K CAO C5 C 0 1 N N N N N N 76.283 -56.060 -4.747 4.222 2.511 0.843 CAO A1A1K 6 A1A1K CBB C6 C 0 1 N N N N N N 86.887 -53.592 -4.476 -7.496 -0.132 -1.176 CBB A1A1K 7 A1A1K CBC C7 C 0 1 N N N N N N 86.323 -52.175 -4.180 -8.579 0.192 -0.145 CBC A1A1K 8 A1A1K CBD C8 C 0 1 N N N N N N 85.741 -51.587 -5.466 -8.624 1.703 0.091 CBD A1A1K 9 A1A1K CBE C9 C 0 1 N N N N N N 87.374 -51.219 -3.641 -9.937 -0.284 -0.664 CBE A1A1K 10 A1A1K CBF C10 C 0 1 N N N N N N 79.696 -55.995 -5.735 0.784 2.622 -0.201 CBF A1A1K 11 A1A1K CBG C11 C 0 1 N N N N N N 78.604 -55.484 -5.053 1.744 2.877 0.647 CBG A1A1K 12 A1A1K CBH C12 C 0 1 N N N N N N 77.356 -55.489 -5.681 2.823 1.885 0.951 CBH A1A1K 13 A1A1K N N1 N 0 1 N N N N N N 84.795 -59.032 -6.804 -2.727 -1.175 2.489 N A1A1K 14 A1A1K CA C13 C 0 1 N N S N N N 83.663 -58.537 -6.022 -2.240 -1.275 1.091 CA A1A1K 15 A1A1K C C14 C 0 1 N N N N N N 82.406 -58.326 -6.940 -0.988 -0.455 0.919 C A1A1K 16 A1A1K O O2 O 0 1 N N N N N N 82.461 -58.428 -8.170 -0.713 0.410 1.724 O A1A1K 17 A1A1K CB C15 C 0 1 N N R N N N 84.168 -57.254 -5.310 -3.365 -0.714 0.203 CB A1A1K 18 A1A1K CG C16 C 0 1 N N S N N N 85.276 -56.802 -6.216 -4.474 -0.315 1.130 CG A1A1K 19 A1A1K CD1 C17 C 0 1 N N N N N N 85.928 -58.160 -6.429 -4.213 -1.160 2.403 CD1 A1A1K 20 A1A1K CD2 C18 C 0 1 N N N N N N 86.324 -55.872 -5.486 -5.844 -0.688 0.541 CD2 A1A1K 21 A1A1K CAB C19 C 0 1 N N R N N N 78.805 -58.676 -6.167 2.076 -0.679 -1.115 CAB A1A1K 22 A1A1K CAC C20 C 0 1 N N R N N N 78.938 -60.126 -6.277 2.316 -2.056 -0.495 CAC A1A1K 23 A1A1K CAD C21 C 0 1 N N S N N N 77.766 -60.769 -5.560 3.692 -2.594 -0.900 CAD A1A1K 24 A1A1K CAE C22 C 0 1 N N R N N N 76.440 -60.230 -6.103 4.800 -1.686 -0.337 CAE A1A1K 25 A1A1K CAX C23 C 0 1 N N N N N N 83.289 -54.969 -5.047 -3.912 1.002 -1.393 CAX A1A1K 26 A1A1K CAY C24 C 0 1 N N N N N N 84.528 -54.621 -4.226 -5.087 0.123 -1.717 CAY A1A1K 27 A1A1K CAZ C25 C 0 1 N N S N N N 85.788 -54.497 -5.138 -6.122 0.216 -0.600 CAZ A1A1K 28 A1A1K NAL N2 N 0 1 N N N N N N 81.258 -58.107 -6.281 -0.172 -0.683 -0.130 NAL A1A1K 29 A1A1K OAH O3 O 0 1 N N N N N N 75.337 -60.745 -5.388 5.811 -1.481 -1.326 OAH A1A1K 30 A1A1K OAI O4 O 0 1 N N N N N N 77.836 -62.188 -5.774 3.856 -3.915 -0.382 OAI A1A1K 31 A1A1K OAJ O5 O 0 1 N N N N N N 78.925 -60.494 -7.661 2.250 -1.951 0.928 OAJ A1A1K 32 A1A1K OAW O6 O 0 1 N N N N N N 83.047 -56.344 -5.180 -2.870 0.233 -0.727 OAW A1A1K 33 A1A1K SEAG SE1 SE 0 0 N N N N N N 76.413 -57.953 -4.134 5.466 1.050 0.387 SEAG A1A1K 34 A1A1K H1 H1 H 0 1 N N N N N N 75.467 -58.373 -6.416 3.523 -0.495 0.910 H1 A1A1K 35 A1A1K H2 H2 H 0 1 N N N N N N 79.993 -58.360 -7.969 1.462 0.359 0.680 H2 A1A1K 36 A1A1K H3 H3 H 0 1 N N N N N N 78.570 -56.393 -7.400 -0.281 1.313 -1.475 H3 A1A1K 37 A1A1K H4 H4 H 0 1 N N N N N N 80.292 -54.733 -8.060 1.715 0.646 -2.815 H4 A1A1K 38 A1A1K H5 H5 H 0 1 N N N N N N 81.580 -55.918 -7.657 1.431 2.403 -2.825 H5 A1A1K 39 A1A1K H6 H6 H 0 1 N N N N N N 80.437 -56.257 -9.000 2.717 1.715 -1.804 H6 A1A1K 40 A1A1K H7 H7 H 0 1 N N N N N N 76.279 -55.432 -3.844 4.232 3.267 0.058 H7 A1A1K 41 A1A1K H8 H8 H 0 1 N N N N N N 75.320 -55.959 -5.268 4.506 2.959 1.795 H8 A1A1K 42 A1A1K H9 H9 H 0 1 N N N N N N 87.216 -54.054 -3.534 -7.531 -1.194 -1.418 H9 A1A1K 43 A1A1K H10 H10 H 0 1 N N N N N N 87.744 -53.504 -5.160 -7.670 0.452 -2.080 H10 A1A1K 44 A1A1K H11 H11 H 0 1 N N N N N N 85.516 -52.270 -3.439 -8.350 -0.316 0.793 H11 A1A1K 45 A1A1K H12 H12 H 0 1 N N N N N N 85.340 -50.583 -5.262 -8.759 2.215 -0.862 H12 A1A1K 46 A1A1K H13 H13 H 0 1 N N N N N N 86.531 -51.518 -6.228 -9.455 1.943 0.753 H13 A1A1K 47 A1A1K H14 H14 H 0 1 N N N N N N 84.933 -52.237 -5.833 -7.689 2.027 0.548 H14 A1A1K 48 A1A1K H15 H15 H 0 1 N N N N N N 87.803 -51.629 -2.715 -9.905 -1.361 -0.832 H15 A1A1K 49 A1A1K H16 H16 H 0 1 N N N N N N 88.171 -51.091 -4.388 -10.708 -0.054 0.071 H16 A1A1K 50 A1A1K H17 H17 H 0 1 N N N N N N 86.909 -50.244 -3.430 -10.165 0.223 -1.602 H17 A1A1K 51 A1A1K H18 H18 H 0 1 N N N N N N 80.658 -56.003 -5.245 -0.018 3.360 -0.287 H18 A1A1K 52 A1A1K H19 H19 H 0 1 N N N N N N 78.715 -55.089 -4.054 1.726 3.826 1.179 H19 A1A1K 53 A1A1K H20 H20 H 0 1 N N N N N N 77.085 -54.459 -5.955 2.750 1.055 0.248 H20 A1A1K 54 A1A1K H21 H21 H 0 1 N N N N N N 77.411 -56.108 -6.589 2.681 1.505 1.963 H21 A1A1K 55 A1A1K H22 H22 H 0 1 N N N N N N 84.605 -58.960 -7.783 -2.382 -0.337 2.933 H22 A1A1K 56 A1A1K H24 H24 H 0 1 N N N N N N 83.400 -59.277 -5.252 -2.045 -2.316 0.836 H24 A1A1K 57 A1A1K H25 H25 H 0 1 N N N N N N 84.573 -57.520 -4.322 -3.745 -1.556 -0.377 H25 A1A1K 58 A1A1K H26 H26 H 0 1 N N N N N N 84.912 -56.353 -7.152 -4.428 0.753 1.345 H26 A1A1K 59 A1A1K H27 H27 H 0 1 N N N N N N 86.408 -58.515 -5.505 -4.603 -2.170 2.283 H27 A1A1K 60 A1A1K H28 H28 H 0 1 N N N N N N 86.674 -58.116 -7.236 -4.646 -0.680 3.281 H28 A1A1K 61 A1A1K H29 H29 H 0 1 N N N N N N 86.637 -56.367 -4.555 -5.827 -1.721 0.195 H29 A1A1K 62 A1A1K H30 H30 H 0 1 N N N N N N 87.195 -55.747 -6.146 -6.616 -0.567 1.301 H30 A1A1K 63 A1A1K H31 H31 H 0 1 N N N N N N 78.866 -58.377 -5.110 1.749 -0.769 -2.142 H31 A1A1K 64 A1A1K H32 H32 H 0 1 N N N N N N 79.875 -60.454 -5.803 1.545 -2.746 -0.839 H32 A1A1K 65 A1A1K H33 H33 H 0 1 N N N N N N 77.831 -60.542 -4.486 3.764 -2.620 -1.988 H33 A1A1K 66 A1A1K H34 H34 H 0 1 N N N N N N 76.362 -60.497 -7.167 5.237 -2.142 0.552 H34 A1A1K 67 A1A1K H35 H35 H 0 1 N N N N N N 83.413 -54.543 -6.054 -3.514 1.426 -2.315 H35 A1A1K 68 A1A1K H36 H36 H 0 1 N N N N N N 82.415 -54.512 -4.560 -4.236 1.810 -0.736 H36 A1A1K 69 A1A1K H37 H37 H 0 1 N N N N N N 84.700 -55.412 -3.481 -5.535 0.448 -2.655 H37 A1A1K 70 A1A1K H38 H38 H 0 1 N N N N N N 84.361 -53.663 -3.711 -4.751 -0.909 -1.814 H38 A1A1K 71 A1A1K H39 H39 H 0 1 N N N N N N 85.475 -54.006 -6.071 -6.148 1.242 -0.234 H39 A1A1K 72 A1A1K H40 H40 H 0 1 N N N N N N 81.289 -58.052 -5.283 -0.391 -1.375 -0.773 H40 A1A1K 73 A1A1K H41 H41 H 0 1 N N N N N N 75.331 -61.693 -5.453 6.522 -0.890 -1.045 H41 A1A1K 74 A1A1K H42 H42 H 0 1 N N N N N N 77.109 -62.612 -5.332 4.707 -4.320 -0.600 H42 A1A1K 75 A1A1K H43 H43 H 0 1 N N N N N N 79.011 -61.437 -7.739 2.394 -2.788 1.391 H43 A1A1K 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A1K O C DOUB N N 1 A1A1K CAN CAM SING N N 2 A1A1K OAJ CAC SING N N 3 A1A1K CAM CAK SING N N 4 A1A1K CAM CBF SING N N 5 A1A1K CAK NAL SING N N 6 A1A1K CAK CAB SING N N 7 A1A1K C NAL SING N N 8 A1A1K C CA SING N N 9 A1A1K N CD1 SING N N 10 A1A1K N CA SING N N 11 A1A1K OAA CAB SING N N 12 A1A1K OAA CAF SING N N 13 A1A1K CD1 CG SING N N 14 A1A1K CAC CAB SING N N 15 A1A1K CAC CAD SING N N 16 A1A1K CG CD2 SING N N 17 A1A1K CG CB SING N N 18 A1A1K CAE CAF SING N N 19 A1A1K CAE CAD SING N N 20 A1A1K CAE OAH SING N N 21 A1A1K CA CB SING N N 22 A1A1K CAF SEAG SING N N 23 A1A1K OAI CAD SING N N 24 A1A1K CBF CBG DOUB N Z 25 A1A1K CBH CBG SING N N 26 A1A1K CBH CAO SING N N 27 A1A1K CD2 CAZ SING N N 28 A1A1K CBD CBC SING N N 29 A1A1K CB OAW SING N N 30 A1A1K OAW CAX SING N N 31 A1A1K CAZ CBB SING N N 32 A1A1K CAZ CAY SING N N 33 A1A1K CAX CAY SING N N 34 A1A1K CAO SEAG SING N N 35 A1A1K CBB CBC SING N N 36 A1A1K CBC CBE SING N N 37 A1A1K CAF H1 SING N N 38 A1A1K CAK H2 SING N N 39 A1A1K CAM H3 SING N N 40 A1A1K CAN H4 SING N N 41 A1A1K CAN H5 SING N N 42 A1A1K CAN H6 SING N N 43 A1A1K CAO H7 SING N N 44 A1A1K CAO H8 SING N N 45 A1A1K CBB H9 SING N N 46 A1A1K CBB H10 SING N N 47 A1A1K CBC H11 SING N N 48 A1A1K CBD H12 SING N N 49 A1A1K CBD H13 SING N N 50 A1A1K CBD H14 SING N N 51 A1A1K CBE H15 SING N N 52 A1A1K CBE H16 SING N N 53 A1A1K CBE H17 SING N N 54 A1A1K CBF H18 SING N N 55 A1A1K CBG H19 SING N N 56 A1A1K CBH H20 SING N N 57 A1A1K CBH H21 SING N N 58 A1A1K N H22 SING N N 59 A1A1K CA H24 SING N N 60 A1A1K CB H25 SING N N 61 A1A1K CG H26 SING N N 62 A1A1K CD1 H27 SING N N 63 A1A1K CD1 H28 SING N N 64 A1A1K CD2 H29 SING N N 65 A1A1K CD2 H30 SING N N 66 A1A1K CAB H31 SING N N 67 A1A1K CAC H32 SING N N 68 A1A1K CAD H33 SING N N 69 A1A1K CAE H34 SING N N 70 A1A1K CAX H35 SING N N 71 A1A1K CAX H36 SING N N 72 A1A1K CAY H37 SING N N 73 A1A1K CAY H38 SING N N 74 A1A1K CAZ H39 SING N N 75 A1A1K NAL H40 SING N N 76 A1A1K OAH H41 SING N N 77 A1A1K OAI H42 SING N N 78 A1A1K OAJ H43 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A1K SMILES ACDLabs 12.01 "CC(C)CC1CC2CNC(C2OCC1)C(=O)NC1C2OC([Se]CCC=CC1C)C(O)C(O)C2O" A1A1K InChI InChI 1.06 "InChI=1S/C25H42N2O6Se/c1-13(2)10-15-7-8-32-22-16(11-15)12-26-18(22)24(31)27-17-14(3)6-4-5-9-34-25-21(30)19(28)20(29)23(17)33-25/h4,6,13-23,25-26,28-30H,5,7-12H2,1-3H3,(H,27,31)/b6-4-/t14-,15+,16+,17-,18+,19+,20-,21-,22-,23-,25-/m1/s1" A1A1K InChIKey InChI 1.06 DWSVZZQFMWHDFH-JBYNEVPESA-N A1A1K SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@@H]1CCO[C@@H]2[C@H](CN[C@@H]2C(=O)N[C@@H]3[C@H](C)\C=C/CC[Se][C@H]4O[C@H]3[C@H](O)[C@H](O)[C@H]4O)C1" A1A1K SMILES CACTVS 3.385 "CC(C)C[CH]1CCO[CH]2[CH](CN[CH]2C(=O)N[CH]3[CH](C)C=CCC[Se][CH]4O[CH]3[CH](O)[CH](O)[CH]4O)C1" A1A1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1/C=C\CC[Se][C@@H]2[C@@H]([C@H]([C@H]([C@@H]([C@@H]1NC(=O)[C@@H]3[C@H]4[C@@H](C[C@@H](CCO4)CC(C)C)CN3)O2)O)O)O" A1A1K SMILES "OpenEye OEToolkits" 2.0.7 "CC1C=CCC[Se]C2C(C(C(C(C1NC(=O)C3C4C(CC(CCO4)CC(C)C)CN3)O2)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A1K "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,5aS,8S,8aR)-4-(2-methylpropyl)-N-[(1R,5Z,7R,8R,9R,10R,11S,12R)-10,11,12-trihydroxy-7-methyl-13-oxa-2-selenabicyclo[7.3.1]tridec-5-en-8-yl]octahydro-2H-oxepino[2,3-c]pyrrole-8-carboxamide (non-preferred name)" A1A1K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},5~{a}~{S},8~{S},8~{a}~{R})-4-(2-methylpropyl)-~{N}-[(1~{R},5~{Z},7~{R},8~{R},9~{R},10~{R},11~{S},12~{R})-7-methyl-10,11,12-tris(oxidanyl)-13-oxa-2-selenabicyclo[7.3.1]tridec-5-en-8-yl]-3,4,5,5~{a},6,7,8,8~{a}-octahydro-2~{H}-oxepino[2,3-c]pyrrole-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A1K "Create component" 2024-08-08 RCSB A1A1K "Initial release" 2025-08-27 RCSB #