data_A1A27 # _chem_comp.id A1A27 _chem_comp.name "(1P)-3-amino-N-{1-[(2S)-2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]piperidin-4-yl}-2-oxo-1-(4-phenyl-3,4-dihydro-2H-1,4-benzoxazin-6-yl)-1,2-dihydrothieno[2,3-b]pyrazine-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H35 F2 N9 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-22 _chem_comp.pdbx_modified_date 2025-09-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 739.794 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A27 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D9E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A27 C1 C1 C 0 1 N N N N N N 0.533 14.398 12.226 5.620 3.964 0.492 C1 A1A27 1 A1A27 C2 C2 C 0 1 Y N N N N N -1.485 15.456 11.973 3.540 2.960 0.271 C2 A1A27 2 A1A27 C3 C3 C 0 1 Y N N N N N -1.484 15.325 10.508 4.047 1.709 0.593 C3 A1A27 3 A1A27 C4 C4 C 0 1 Y N N N N N -2.579 15.865 9.972 3.084 0.708 0.585 C4 A1A27 4 A1A27 C5 C5 C 0 1 Y N N N N N -3.513 16.445 10.758 1.829 1.110 0.268 C5 A1A27 5 A1A27 C6 C6 C 0 1 N N N N N N -4.817 17.086 10.230 0.656 0.230 0.197 C6 A1A27 6 A1A27 O1 O1 O 0 1 N N N N N N -4.809 17.726 9.233 0.773 -0.958 0.431 O1 A1A27 7 A1A27 O2 O2 O 0 1 N N N N N N 1.752 13.560 10.248 7.396 2.567 1.095 O2 A1A27 8 A1A27 C10 C7 C 0 1 Y N N N N N 0.447 15.504 6.343 6.113 -1.515 2.748 C10 A1A27 9 A1A27 C11 C8 C 0 1 Y N N N N N -0.022 14.215 5.647 6.993 -2.153 1.888 C11 A1A27 10 A1A27 C12 C9 C 0 1 N N N N N N 0.252 12.813 3.745 8.035 -4.184 1.185 C12 A1A27 11 A1A27 C13 C10 C 0 1 N N N N N N -0.909 11.946 4.240 8.991 -3.340 0.329 C13 A1A27 12 A1A27 C14 C11 C 0 1 Y N N N N N -1.478 10.841 6.430 8.378 -1.767 -1.514 C14 A1A27 13 A1A27 C15 C12 C 0 1 Y N N N N N -2.723 10.803 6.850 9.580 -1.210 -1.933 C15 A1A27 14 A1A27 C16 C13 C 0 1 Y N N N N N -3.226 9.571 7.619 9.728 -0.794 -3.241 C16 A1A27 15 A1A27 C17 C14 C 0 1 Y N N N N N -2.418 8.552 7.849 8.681 -0.931 -4.134 C17 A1A27 16 A1A27 C18 C15 C 0 1 Y N N N N N -0.979 8.598 7.358 7.483 -1.485 -3.721 C18 A1A27 17 A1A27 C19 C16 C 0 1 Y N N N N N -0.542 9.665 6.697 7.328 -1.903 -2.414 C19 A1A27 18 A1A27 C20 C17 C 0 1 Y N N N N N -0.528 13.227 6.361 7.343 -1.545 0.684 C20 A1A27 19 A1A27 C21 C18 C 0 1 Y N N N N N -0.649 13.359 7.886 6.820 -0.307 0.350 C21 A1A27 20 A1A27 C22 C19 C 0 1 N N N N N N -7.326 17.432 10.539 -1.719 -0.141 -0.200 C22 A1A27 21 A1A27 C23 C20 C 0 1 N N N N N N -11.331 16.690 9.363 -5.825 -1.269 0.186 C23 A1A27 22 A1A27 C24 C21 C 0 1 N N S N N N -12.249 15.774 10.173 -6.924 -0.381 -0.402 C24 A1A27 23 A1A27 C25 C22 C 0 1 N N N N N N -13.035 14.885 9.226 -6.965 0.948 0.354 C25 A1A27 24 A1A27 C26 C23 C 0 1 Y N N N N N -13.211 16.649 10.981 -8.255 -1.075 -0.271 C26 A1A27 25 A1A27 C27 C24 C 0 1 Y N N N N N -14.104 17.656 10.251 -8.739 -1.413 0.982 C27 A1A27 26 A1A27 C28 C25 C 0 1 Y N N N N N -14.938 18.415 10.930 -9.961 -2.050 1.102 C28 A1A27 27 A1A27 C29 C26 C 0 1 Y N N N N N -15.015 18.292 12.447 -10.699 -2.349 -0.030 C29 A1A27 28 A1A27 C30 C27 C 0 1 Y N N N N N -14.245 17.424 13.077 -10.213 -2.011 -1.282 C30 A1A27 29 A1A27 C31 C28 C 0 1 Y N N N N N -13.275 16.540 12.289 -8.994 -1.370 -1.400 C31 A1A27 30 A1A27 C32 C29 C 0 1 Y N N N N N -15.339 14.623 10.169 -9.082 2.276 0.613 C32 A1A27 31 A1A27 C33 C30 C 0 1 Y N N N N N -15.115 12.703 11.169 -9.448 2.834 -1.443 C33 A1A27 32 A1A27 C34 C31 C 0 1 N N N N N N -8.389 17.230 11.611 -2.760 0.469 -1.143 C34 A1A27 33 A1A27 C35 C32 C 0 1 N N N N N N -9.833 17.450 11.070 -4.004 -0.423 -1.166 C35 A1A27 34 A1A27 C36 C33 C 0 1 N N N N N N -9.084 16.997 8.826 -3.588 -1.161 1.104 C36 A1A27 35 A1A27 C37 C34 C 0 1 N N N N N N -7.682 16.701 9.298 -2.331 -0.292 1.195 C37 A1A27 36 A1A27 C7 C35 C 0 1 N N N N N N 0.653 14.202 10.781 6.207 2.663 0.844 C7 A1A27 37 A1A27 C8 C36 C 0 1 Y N N N N N -0.235 14.476 8.477 5.940 0.328 1.217 C8 A1A27 38 A1A27 C9 C37 C 0 1 Y N N N N N 0.348 15.619 7.651 5.589 -0.280 2.415 C9 A1A27 39 A1A27 F1 F1 F 0 1 N N N N N N -14.037 17.768 8.901 -8.018 -1.120 2.086 F1 A1A27 40 A1A27 F2 F2 F 0 1 N N N N N N -15.878 19.078 13.151 -11.892 -2.972 0.086 F2 A1A27 41 A1A27 N1 N1 N 0 1 N N N N N N 1.619 13.892 13.049 6.414 5.096 0.435 N1 A1A27 42 A1A27 N2 N2 N 0 1 N N N N N N -0.474 14.994 12.834 4.339 4.042 0.226 N2 A1A27 43 A1A27 N3 N3 N 0 1 N N N N N N -6.054 16.858 11.011 -0.549 0.738 -0.129 N3 A1A27 44 A1A27 N4 N4 N 0 1 N N N N N N -0.331 14.650 9.937 5.409 1.580 0.885 N4 A1A27 45 A1A27 N5 N5 N 0 1 N N N N N N -0.973 12.009 5.686 8.227 -2.194 -0.193 N5 A1A27 46 A1A27 N6 N6 N 0 1 N N N N N N -9.997 16.594 9.869 -4.553 -0.535 0.192 N6 A1A27 47 A1A27 N7 N7 N 0 1 Y N N N N N -14.055 14.177 9.974 -8.092 1.750 -0.129 N7 A1A27 48 A1A27 N8 N8 N 0 1 Y N N N N N -15.965 13.760 10.871 -9.890 2.922 -0.189 N8 A1A27 49 A1A27 N9 N9 N 0 1 Y N N N N N -13.869 12.949 10.598 -8.352 2.122 -1.458 N9 A1A27 50 A1A27 O3 O3 O 0 1 N N N N N N 0.098 14.125 4.251 7.507 -3.364 2.230 O3 A1A27 51 A1A27 O4 O4 O 0 1 N N N N N N -11.499 14.981 11.033 -6.648 -0.135 -1.783 O4 A1A27 52 A1A27 S1 S1 S 0 1 Y N N N N N -3.055 16.346 12.514 1.809 2.837 -0.044 S1 A1A27 53 A1A27 H3 H1 H 0 1 N N N N N N -2.721 15.839 8.902 3.320 -0.321 0.814 H3 A1A27 54 A1A27 H6 H2 H 0 1 N N N N N N 0.857 16.315 5.759 5.833 -1.985 3.679 H6 A1A27 55 A1A27 H8 H3 H 0 1 N N N N N N 1.204 12.391 4.099 7.219 -4.554 0.564 H8 A1A27 56 A1A27 H7 H4 H 0 1 N N N N N N 0.249 12.840 2.645 8.577 -5.024 1.618 H7 A1A27 57 A1A27 H9 H5 H 0 1 N N N N N N -1.853 12.318 3.814 9.819 -2.985 0.942 H9 A1A27 58 A1A27 H10 H6 H 0 1 N N N N N N -0.750 10.904 3.925 9.372 -3.939 -0.498 H10 A1A27 59 A1A27 H11 H7 H 0 1 N N N N N N -3.388 11.632 6.656 10.398 -1.103 -1.236 H11 A1A27 60 A1A27 H12 H8 H 0 1 N N N N N N -4.246 9.538 7.973 10.662 -0.361 -3.568 H12 A1A27 61 A1A27 H13 H9 H 0 1 N N N N N N -2.779 7.687 8.385 8.799 -0.604 -5.157 H13 A1A27 62 A1A27 H14 H10 H 0 1 N N N N N N -0.315 7.767 7.546 6.667 -1.590 -4.421 H14 A1A27 63 A1A27 H15 H11 H 0 1 N N N N N N 0.479 9.700 6.347 6.392 -2.335 -2.091 H15 A1A27 64 A1A27 H16 H12 H 0 1 N N N N N N -1.066 12.553 8.472 7.096 0.163 -0.583 H16 A1A27 65 A1A27 H17 H13 H 0 1 N N N N N N -7.209 18.505 10.329 -1.417 -1.119 -0.574 H17 A1A27 66 A1A27 H18 H14 H 0 1 N N N N N N -11.682 17.729 9.448 -6.089 -1.545 1.207 H18 A1A27 67 A1A27 H19 H15 H 0 1 N N N N N N -11.346 16.383 8.307 -5.722 -2.169 -0.419 H19 A1A27 68 A1A27 H21 H16 H 0 1 N N N N N N -12.356 14.160 8.753 -7.086 0.756 1.420 H21 A1A27 69 A1A27 H20 H17 H 0 1 N N N N N N -13.510 15.503 8.450 -6.035 1.491 0.186 H20 A1A27 70 A1A27 H23 H18 H 0 1 N N N N N N -15.567 19.124 10.413 -10.340 -2.313 2.079 H23 A1A27 71 A1A27 H24 H19 H 0 1 N N N N N N -14.300 17.337 14.152 -10.788 -2.245 -2.166 H24 A1A27 72 A1A27 H25 H20 H 0 1 N N N N N N -12.646 15.830 12.806 -8.618 -1.103 -2.377 H25 A1A27 73 A1A27 H26 H21 H 0 1 N N N N N N -15.750 15.548 9.792 -9.194 2.180 1.682 H26 A1A27 74 A1A27 H27 H22 H 0 1 N N N N N N -15.378 11.831 11.750 -9.922 3.275 -2.308 H27 A1A27 75 A1A27 H29 H23 H 0 1 N N N N N N -8.310 16.203 11.997 -3.032 1.464 -0.790 H29 A1A27 76 A1A27 H28 H24 H 0 1 N N N N N N -8.206 17.944 12.428 -2.344 0.540 -2.148 H28 A1A27 77 A1A27 H31 H25 H 0 1 N N N N N N -9.975 18.507 10.800 -4.753 0.016 -1.825 H31 A1A27 78 A1A27 H30 H26 H 0 1 N N N N N N -10.568 17.165 11.837 -3.734 -1.413 -1.531 H30 A1A27 79 A1A27 H33 H27 H 0 1 N N N N N N -9.193 18.074 8.629 -3.320 -2.148 0.728 H33 A1A27 80 A1A27 H32 H28 H 0 1 N N N N N N -9.295 16.433 7.906 -4.034 -1.258 2.094 H32 A1A27 81 A1A27 H35 H29 H 0 1 N N N N N N -7.596 15.621 9.490 -1.609 -0.765 1.860 H35 A1A27 82 A1A27 H34 H30 H 0 1 N N N N N N -6.976 16.990 8.505 -2.596 0.691 1.584 H34 A1A27 83 A1A27 H5 H31 H 0 1 N N N N N N 0.680 16.523 8.140 4.901 0.211 3.087 H5 A1A27 84 A1A27 H2 H32 H 0 1 N N N N N N 1.586 14.001 14.042 6.023 5.952 0.199 H2 A1A27 85 A1A27 H1 H33 H 0 1 N N N N N N 2.399 13.434 12.622 7.362 5.034 0.633 H1 A1A27 86 A1A27 H4 H34 H 0 1 N N N N N N -6.026 16.318 11.853 -0.641 1.685 -0.316 H4 A1A27 87 A1A27 H22 H36 H 0 1 N N N N N N -11.006 15.535 11.627 -6.608 -0.935 -2.324 H22 A1A27 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A27 C12 C13 SING N N 1 A1A27 C12 O3 SING N N 2 A1A27 C13 N5 SING N N 3 A1A27 O3 C11 SING N N 4 A1A27 C11 C10 DOUB Y N 5 A1A27 C11 C20 SING Y N 6 A1A27 N5 C20 SING N N 7 A1A27 N5 C14 SING N N 8 A1A27 C10 C9 SING Y N 9 A1A27 C20 C21 DOUB Y N 10 A1A27 C14 C19 DOUB Y N 11 A1A27 C14 C15 SING Y N 12 A1A27 C19 C18 SING Y N 13 A1A27 C15 C16 DOUB Y N 14 A1A27 C18 C17 DOUB Y N 15 A1A27 C16 C17 SING Y N 16 A1A27 C9 C8 DOUB Y N 17 A1A27 C21 C8 SING Y N 18 A1A27 C8 N4 SING N N 19 A1A27 C36 C37 SING N N 20 A1A27 C36 N6 SING N N 21 A1A27 F1 C27 SING N N 22 A1A27 C25 N7 SING N N 23 A1A27 C25 C24 SING N N 24 A1A27 O1 C6 DOUB N N 25 A1A27 C37 C22 SING N N 26 A1A27 C23 N6 SING N N 27 A1A27 C23 C24 SING N N 28 A1A27 N6 C35 SING N N 29 A1A27 N4 C3 SING N N 30 A1A27 N4 C7 SING N N 31 A1A27 C4 C3 SING Y N 32 A1A27 C4 C5 DOUB Y N 33 A1A27 N7 C32 SING Y N 34 A1A27 N7 N9 SING Y N 35 A1A27 C32 N8 DOUB Y N 36 A1A27 C24 C26 SING N N 37 A1A27 C24 O4 SING N N 38 A1A27 C6 C5 SING N N 39 A1A27 C6 N3 SING N N 40 A1A27 O2 C7 DOUB N N 41 A1A27 C27 C28 DOUB Y N 42 A1A27 C27 C26 SING Y N 43 A1A27 C3 C2 DOUB Y N 44 A1A27 C22 N3 SING N N 45 A1A27 C22 C34 SING N N 46 A1A27 N9 C33 DOUB Y N 47 A1A27 C5 S1 SING Y N 48 A1A27 C7 C1 SING N N 49 A1A27 N8 C33 SING Y N 50 A1A27 C28 C29 SING Y N 51 A1A27 C26 C31 DOUB Y N 52 A1A27 C35 C34 SING N N 53 A1A27 C2 S1 SING Y N 54 A1A27 C2 N2 SING N N 55 A1A27 C1 N2 DOUB N N 56 A1A27 C1 N1 SING N N 57 A1A27 C31 C30 SING Y N 58 A1A27 C29 C30 DOUB Y N 59 A1A27 C29 F2 SING N N 60 A1A27 C4 H3 SING N N 61 A1A27 C10 H6 SING N N 62 A1A27 C12 H8 SING N N 63 A1A27 C12 H7 SING N N 64 A1A27 C13 H9 SING N N 65 A1A27 C13 H10 SING N N 66 A1A27 C15 H11 SING N N 67 A1A27 C16 H12 SING N N 68 A1A27 C17 H13 SING N N 69 A1A27 C18 H14 SING N N 70 A1A27 C19 H15 SING N N 71 A1A27 C21 H16 SING N N 72 A1A27 C22 H17 SING N N 73 A1A27 C23 H18 SING N N 74 A1A27 C23 H19 SING N N 75 A1A27 C25 H21 SING N N 76 A1A27 C25 H20 SING N N 77 A1A27 C28 H23 SING N N 78 A1A27 C30 H24 SING N N 79 A1A27 C31 H25 SING N N 80 A1A27 C32 H26 SING N N 81 A1A27 C33 H27 SING N N 82 A1A27 C34 H29 SING N N 83 A1A27 C34 H28 SING N N 84 A1A27 C35 H31 SING N N 85 A1A27 C35 H30 SING N N 86 A1A27 C36 H33 SING N N 87 A1A27 C36 H32 SING N N 88 A1A27 C37 H35 SING N N 89 A1A27 C37 H34 SING N N 90 A1A27 C9 H5 SING N N 91 A1A27 N1 H2 SING N N 92 A1A27 N1 H1 SING N N 93 A1A27 N3 H4 SING N N 94 A1A27 O4 H22 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A27 SMILES ACDLabs 14.52 "Fc1ccc(c(F)c1)C(O)(Cn1cncn1)CN1CCC(CC1)NC(=O)c1cc2N(C(=O)C(N)=Nc2s1)c1ccc2OCCN(c3ccccc3)c2c1" A1A27 InChI InChI 1.06 "InChI=1S/C37H35F2N9O4S/c38-23-6-8-27(28(39)16-23)37(51,20-46-22-41-21-42-46)19-45-12-10-24(11-13-45)43-34(49)32-18-30-35(53-32)44-33(40)36(50)48(30)26-7-9-31-29(17-26)47(14-15-52-31)25-4-2-1-3-5-25/h1-9,16-18,21-22,24,51H,10-15,19-20H2,(H2,40,44)(H,43,49)/t37-/m0/s1" A1A27 InChIKey InChI 1.06 LAWFFQRHZBSHCM-QNGWXLTQSA-N A1A27 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2sc(cc2N(C1=O)c3ccc4OCCN(c5ccccc5)c4c3)C(=O)NC6CCN(CC6)C[C@](O)(Cn7cncn7)c8ccc(F)cc8F" A1A27 SMILES CACTVS 3.385 "NC1=Nc2sc(cc2N(C1=O)c3ccc4OCCN(c5ccccc5)c4c3)C(=O)NC6CCN(CC6)C[C](O)(Cn7cncn7)c8ccc(F)cc8F" A1A27 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CCOc3c2cc(cc3)N4c5cc(sc5N=C(C4=O)N)C(=O)NC6CCN(CC6)C[C@](Cn7cncn7)(c8ccc(cc8F)F)O" A1A27 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CCOc3c2cc(cc3)N4c5cc(sc5N=C(C4=O)N)C(=O)NC6CCN(CC6)CC(Cn7cncn7)(c8ccc(cc8F)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A27 "SYSTEMATIC NAME" ACDLabs 14.52 "(1P)-3-amino-N-{1-[(2S)-2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]piperidin-4-yl}-2-oxo-1-(4-phenyl-3,4-dihydro-2H-1,4-benzoxazin-6-yl)-1,2-dihydrothieno[2,3-b]pyrazine-6-carboxamide" A1A27 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-azanyl-~{N}-[1-[(2~{S})-2-[2,4-bis(fluoranyl)phenyl]-2-oxidanyl-3-(1,2,4-triazol-1-yl)propyl]piperidin-4-yl]-2-oxidanylidene-1-(4-phenyl-2,3-dihydro-1,4-benzoxazin-6-yl)thieno[2,3-b]pyrazine-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A27 "Create component" 2024-08-22 RCSB A1A27 "Initial release" 2025-09-17 RCSB #