data_A1A29 # _chem_comp.id A1A29 _chem_comp.name "1-cyclobutyl-N-[3-(dimethylamino)propyl]-2-(3,4,5-trimethoxyphenyl)-1H-1,3-benzimidazole-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-22 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.573 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A29 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A29 C02 C1 C 0 1 N N N N N N 29.533 -41.222 0.860 4.098 -0.669 0.323 C02 A1A29 1 A1A29 C04 C2 C 0 1 N N N N N N 31.125 -41.846 2.681 6.534 -0.613 0.345 C04 A1A29 2 A1A29 C05 C3 C 0 1 N N N N N N 31.084 -40.970 3.920 7.653 0.384 0.035 C05 A1A29 3 A1A29 C06 C4 C 0 1 N N N N N N 29.677 -40.463 4.212 9.009 -0.281 0.277 C06 A1A29 4 A1A29 C08 C5 C 0 1 N N N N N N 27.415 -41.022 4.552 11.386 0.160 0.422 C08 A1A29 5 A1A29 C09 C6 C 0 1 N N N N N N 29.090 -42.212 5.729 10.109 1.009 -1.452 C09 A1A29 6 A1A29 C10 C7 C 0 1 Y N N N N N 29.259 -40.432 -0.422 2.790 -0.026 0.095 C10 A1A29 7 A1A29 C11 C8 C 0 1 Y N N N N N 30.025 -39.298 -0.699 2.731 1.303 -0.346 C11 A1A29 8 A1A29 C12 C9 C 0 1 Y N N N N N 29.788 -38.576 -1.857 1.530 1.908 -0.560 C12 A1A29 9 A1A29 C13 C10 C 0 1 Y N N N N N 28.769 -39.029 -2.746 0.339 1.203 -0.341 C13 A1A29 10 A1A29 C14 C11 C 0 1 Y N N N N N 28.043 -40.140 -2.481 0.391 -0.133 0.102 C14 A1A29 11 A1A29 C16 C12 C 0 1 N N N N N N 26.155 -41.395 -3.572 -1.379 -1.873 0.657 C16 A1A29 12 A1A29 C17 C13 C 0 1 N N N N N N 25.236 -41.273 -2.351 -2.024 -2.700 -0.467 C17 A1A29 13 A1A29 C18 C14 C 0 1 N N N N N N 25.032 -42.796 -2.414 -3.059 -3.161 0.573 C18 A1A29 14 A1A29 C19 C15 C 0 1 N N N N N N 26.284 -42.893 -3.273 -2.760 -1.857 1.332 C19 A1A29 15 A1A29 C20 C16 C 0 1 Y N N N N N 27.349 -39.305 -4.345 -1.713 0.506 -0.135 C20 A1A29 16 A1A29 C21 C17 C 0 1 Y N N N N N 26.609 -39.133 -5.643 -3.190 0.497 -0.146 C21 A1A29 17 A1A29 C22 C18 C 0 1 Y N N N N N 25.233 -39.212 -5.700 -3.899 1.677 0.089 C22 A1A29 18 A1A29 C23 C19 C 0 1 Y N N N N N 24.575 -39.081 -6.919 -5.282 1.665 0.078 C23 A1A29 19 A1A29 C25 C20 C 0 1 N N N N N N 22.473 -39.141 -5.807 -5.206 3.995 0.550 C25 A1A29 20 A1A29 C26 C21 C 0 1 Y N N N N N 25.318 -38.872 -8.049 -5.967 0.479 -0.166 C26 A1A29 21 A1A29 C28 C22 C 0 1 N N N N N N 24.532 -37.419 -9.731 -7.978 0.214 1.076 C28 A1A29 22 A1A29 C29 C23 C 0 1 Y N N N N N 26.693 -38.799 -8.017 -5.263 -0.698 -0.400 C29 A1A29 23 A1A29 C31 C24 C 0 1 N N N N N N 28.737 -38.476 -9.171 -5.788 -2.438 -1.935 C31 A1A29 24 A1A29 C32 C25 C 0 1 Y N N N N N 27.348 -38.931 -6.794 -3.880 -0.691 -0.396 C32 A1A29 25 A1A29 C34 C26 C 0 1 Y N N N N N 28.278 -40.878 -1.289 1.614 -0.744 0.313 C34 A1A29 26 A1A29 N03 N1 N 0 1 N N N N N N 30.835 -41.096 1.469 5.235 0.024 0.113 N03 A1A29 27 A1A29 N07 N2 N 0 1 N N N N N N 28.760 -41.560 4.474 10.084 0.675 -0.021 N07 A1A29 28 A1A29 N15 N3 N 0 1 Y N N N N N 27.132 -40.309 -3.467 -0.922 -0.550 0.224 N15 A1A29 29 A1A29 N33 N4 N 0 1 Y N N N N N 28.341 -38.519 -3.925 -0.962 1.533 -0.459 N33 A1A29 30 A1A29 O01 O1 O 0 1 N N N N N N 28.676 -41.883 1.347 4.151 -1.822 0.706 O01 A1A29 31 A1A29 O24 O2 O 0 1 N N N N N N 23.183 -39.149 -7.017 -5.973 2.814 0.306 O24 A1A29 32 A1A29 O27 O3 O 0 1 N N N N N N 24.695 -38.746 -9.303 -7.327 0.469 -0.171 O27 A1A29 33 A1A29 O30 O4 O 0 1 N N N N N N 27.349 -38.579 -9.224 -5.936 -1.857 -0.638 O30 A1A29 34 A1A29 H041 H1 H 0 0 N N N N N N 30.379 -42.647 2.789 6.633 -1.484 -0.302 H041 A1A29 35 A1A29 H042 H2 H 0 0 N N N N N N 32.128 -42.288 2.593 6.605 -0.925 1.388 H042 A1A29 36 A1A29 H051 H3 H 0 0 N N N N N N 31.437 -41.556 4.782 7.582 0.696 -1.007 H051 A1A29 37 A1A29 H052 H4 H 0 0 N N N N N N 31.748 -40.107 3.767 7.554 1.255 0.682 H052 A1A29 38 A1A29 H061 H5 H 0 0 N N N N N N 29.709 -39.806 5.093 9.080 -0.593 1.319 H061 A1A29 39 A1A29 H062 H6 H 0 0 N N N N N N 29.315 -39.894 3.343 9.108 -1.152 -0.370 H062 A1A29 40 A1A29 H083 H7 H 0 0 N N N N N N 26.704 -41.838 4.750 11.600 -0.777 -0.092 H083 A1A29 41 A1A29 H082 H8 H 0 0 N N N N N N 27.362 -40.284 5.366 12.163 0.887 0.189 H082 A1A29 42 A1A29 H081 H9 H 0 0 N N N N N N 27.159 -40.536 3.599 11.361 -0.013 1.498 H081 A1A29 43 A1A29 H092 H10 H 0 0 N N N N N N 28.386 -43.038 5.910 9.156 1.454 -1.738 H092 A1A29 44 A1A29 H093 H11 H 0 0 N N N N N N 30.115 -42.608 5.678 10.913 1.719 -1.645 H093 A1A29 45 A1A29 H091 H12 H 0 0 N N N N N N 29.019 -41.484 6.550 10.276 0.103 -2.033 H091 A1A29 46 A1A29 H111 H13 H 0 0 N N N N N N 30.799 -38.985 -0.013 3.645 1.852 -0.516 H111 A1A29 47 A1A29 H121 H14 H 0 0 N N N N N N 30.362 -37.689 -2.082 1.496 2.933 -0.900 H121 A1A29 48 A1A29 H161 H15 H 0 0 N N N N N N 25.553 -41.266 -4.483 -0.623 -2.418 1.223 H161 A1A29 49 A1A29 H172 H16 H 0 0 N N N N N N 25.735 -40.917 -1.438 -2.450 -2.093 -1.267 H172 A1A29 50 A1A29 H171 H17 H 0 0 N N N N N N 24.324 -40.683 -2.524 -1.389 -3.503 -0.839 H171 A1A29 51 A1A29 H181 H18 H 0 0 N N N N N N 24.108 -43.110 -2.921 -4.075 -3.216 0.183 H181 A1A29 52 A1A29 H182 H19 H 0 0 N N N N N N 25.108 -43.305 -1.442 -2.763 -4.060 1.114 H182 A1A29 53 A1A29 H192 H20 H 0 0 N N N N N N 26.180 -43.542 -4.155 -2.720 -1.981 2.414 H192 A1A29 54 A1A29 H191 H21 H 0 0 N N N N N N 27.194 -43.169 -2.720 -3.387 -1.019 1.024 H191 A1A29 55 A1A29 H221 H22 H 0 0 N N N N N N 24.665 -39.376 -4.796 -3.368 2.598 0.279 H221 A1A29 56 A1A29 H253 H23 H 0 0 N N N N N N 21.394 -39.198 -6.014 -4.571 4.201 -0.312 H253 A1A29 57 A1A29 H251 H24 H 0 0 N N N N N N 22.776 -40.006 -5.199 -5.877 4.837 0.717 H251 A1A29 58 A1A29 H252 H25 H 0 0 N N N N N N 22.693 -38.213 -5.259 -4.582 3.848 1.432 H252 A1A29 59 A1A29 H282 H26 H 0 0 N N N N N N 24.040 -37.408 -10.715 -7.679 -0.765 1.448 H282 A1A29 60 A1A29 H281 H27 H 0 0 N N N N N N 23.912 -36.873 -9.005 -7.693 0.980 1.797 H281 A1A29 61 A1A29 H283 H28 H 0 0 N N N N N N 25.517 -36.935 -9.809 -9.058 0.235 0.932 H283 A1A29 62 A1A29 H311 H29 H 0 0 N N N N N N 29.131 -38.304 -10.183 -6.757 -2.788 -2.289 H311 A1A29 63 A1A29 H313 H30 H 0 0 N N N N N N 29.018 -37.635 -8.520 -5.397 -1.691 -2.626 H313 A1A29 64 A1A29 H312 H31 H 0 0 N N N N N N 29.159 -39.408 -8.767 -5.096 -3.278 -1.880 H312 A1A29 65 A1A29 H321 H32 H 0 0 N N N N N N 28.426 -38.876 -6.746 -3.334 -1.605 -0.578 H321 A1A29 66 A1A29 H341 H33 H 0 0 N N N N N N 27.704 -41.765 -1.066 1.658 -1.768 0.652 H341 A1A29 67 A1A29 H031 H34 H 0 0 N N N N N N 31.529 -40.501 1.063 5.193 0.943 -0.192 H031 A1A29 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A29 C28 O27 SING N N 1 A1A29 O27 C26 SING N N 2 A1A29 O30 C31 SING N N 3 A1A29 O30 C29 SING N N 4 A1A29 C26 C29 DOUB Y N 5 A1A29 C26 C23 SING Y N 6 A1A29 C29 C32 SING Y N 7 A1A29 O24 C23 SING N N 8 A1A29 O24 C25 SING N N 9 A1A29 C23 C22 DOUB Y N 10 A1A29 C32 C21 DOUB Y N 11 A1A29 C22 C21 SING Y N 12 A1A29 C21 C20 SING N N 13 A1A29 C20 N33 DOUB Y N 14 A1A29 C20 N15 SING Y N 15 A1A29 N33 C13 SING Y N 16 A1A29 C16 N15 SING N N 17 A1A29 C16 C19 SING N N 18 A1A29 C16 C17 SING N N 19 A1A29 N15 C14 SING Y N 20 A1A29 C19 C18 SING N N 21 A1A29 C13 C14 DOUB Y N 22 A1A29 C13 C12 SING Y N 23 A1A29 C14 C34 SING Y N 24 A1A29 C18 C17 SING N N 25 A1A29 C12 C11 DOUB Y N 26 A1A29 C34 C10 DOUB Y N 27 A1A29 C11 C10 SING Y N 28 A1A29 C10 C02 SING N N 29 A1A29 C02 O01 DOUB N N 30 A1A29 C02 N03 SING N N 31 A1A29 N03 C04 SING N N 32 A1A29 C04 C05 SING N N 33 A1A29 C05 C06 SING N N 34 A1A29 C06 N07 SING N N 35 A1A29 N07 C08 SING N N 36 A1A29 N07 C09 SING N N 37 A1A29 C04 H041 SING N N 38 A1A29 C04 H042 SING N N 39 A1A29 C05 H051 SING N N 40 A1A29 C05 H052 SING N N 41 A1A29 C06 H061 SING N N 42 A1A29 C06 H062 SING N N 43 A1A29 C08 H083 SING N N 44 A1A29 C08 H082 SING N N 45 A1A29 C08 H081 SING N N 46 A1A29 C09 H092 SING N N 47 A1A29 C09 H093 SING N N 48 A1A29 C09 H091 SING N N 49 A1A29 C11 H111 SING N N 50 A1A29 C12 H121 SING N N 51 A1A29 C16 H161 SING N N 52 A1A29 C17 H172 SING N N 53 A1A29 C17 H171 SING N N 54 A1A29 C18 H181 SING N N 55 A1A29 C18 H182 SING N N 56 A1A29 C19 H192 SING N N 57 A1A29 C19 H191 SING N N 58 A1A29 C22 H221 SING N N 59 A1A29 C25 H253 SING N N 60 A1A29 C25 H251 SING N N 61 A1A29 C25 H252 SING N N 62 A1A29 C28 H282 SING N N 63 A1A29 C28 H281 SING N N 64 A1A29 C28 H283 SING N N 65 A1A29 C31 H311 SING N N 66 A1A29 C31 H313 SING N N 67 A1A29 C31 H312 SING N N 68 A1A29 C32 H321 SING N N 69 A1A29 C34 H341 SING N N 70 A1A29 N03 H031 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A29 SMILES ACDLabs 14.52 "CN(C)CCCNC(=O)c1ccc2nc(c3cc(OC)c(OC)c(OC)c3)n(c2c1)C1CCC1" A1A29 InChI InChI 1.06 "InChI=1S/C26H34N4O4/c1-29(2)13-7-12-27-26(31)17-10-11-20-21(14-17)30(19-8-6-9-19)25(28-20)18-15-22(32-3)24(34-5)23(16-18)33-4/h10-11,14-16,19H,6-9,12-13H2,1-5H3,(H,27,31)" A1A29 InChIKey InChI 1.06 QSAGTNCQQMIGRY-UHFFFAOYSA-N A1A29 SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1OC)c2nc3ccc(cc3n2C4CCC4)C(=O)NCCCN(C)C" A1A29 SMILES CACTVS 3.385 "COc1cc(cc(OC)c1OC)c2nc3ccc(cc3n2C4CCC4)C(=O)NCCCN(C)C" A1A29 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCNC(=O)c1ccc2c(c1)n(c(n2)c3cc(c(c(c3)OC)OC)OC)C4CCC4" A1A29 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCCNC(=O)c1ccc2c(c1)n(c(n2)c3cc(c(c(c3)OC)OC)OC)C4CCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A29 "SYSTEMATIC NAME" ACDLabs 14.52 "1-cyclobutyl-N-[3-(dimethylamino)propyl]-2-(3,4,5-trimethoxyphenyl)-1H-1,3-benzimidazole-6-carboxamide" A1A29 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-cyclobutyl-~{N}-[3-(dimethylamino)propyl]-2-(3,4,5-trimethoxyphenyl)benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A29 "Create component" 2024-08-22 RCSB A1A29 "Initial release" 2024-11-27 RCSB #