data_A1A2G # _chem_comp.id A1A2G _chem_comp.name "(3R)-3-hydroxy-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-1lambda~6~-thiane-1,1-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-16 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 296.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A2G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D6I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A2G N2 N1 N 0 1 Y N N N N N 15.076 0.296 3.814 -2.607 -1.771 0.360 N2 A1A2G 1 A1A2G C3 C1 C 0 1 N N N N N N 14.228 -1.660 -0.173 2.563 -1.993 -0.117 C3 A1A2G 2 A1A2G C6 C2 C 0 1 Y N N N N N 15.376 1.435 3.139 -2.174 -0.553 0.047 C6 A1A2G 3 A1A2G C9 C3 C 0 1 Y N N N N N 15.546 2.638 3.833 -3.119 0.476 -0.083 C9 A1A2G 4 A1A2G C12 C4 C 0 1 N N N N N N 13.175 0.576 0.348 1.867 0.255 0.738 C12 A1A2G 5 A1A2G C1 C5 C 0 1 N N N N N N 11.956 -1.250 -1.178 4.538 -0.527 0.349 C1 A1A2G 6 A1A2G C10 C6 C 0 1 Y N N N N N 15.839 4.000 3.549 -3.061 1.901 -0.403 C10 A1A2G 7 A1A2G C11 C7 C 0 1 Y N N N N N 15.824 4.674 4.751 -4.324 2.357 -0.375 C11 A1A2G 8 A1A2G C2 C8 C 0 1 N N N N N N 12.886 -2.274 -0.536 3.939 -1.556 -0.612 C2 A1A2G 9 A1A2G C4 C9 C 0 1 N N R N N N 14.125 -0.527 0.868 1.553 -0.858 -0.264 C4 A1A2G 10 A1A2G C5 C10 C 0 1 N N N N N N 15.526 0.098 1.070 0.144 -1.395 -0.003 C5 A1A2G 11 A1A2G C7 C11 C 0 1 Y N N N N N 14.952 0.354 5.144 -3.893 -2.010 0.544 C7 A1A2G 12 A1A2G C8 C12 C 0 1 Y N N N N N 15.372 2.535 5.225 -4.478 0.175 0.123 C8 A1A2G 13 A1A2G N1 N2 N 0 1 N N N N N N 15.495 1.347 1.800 -0.826 -0.306 -0.144 N1 A1A2G 14 A1A2G N3 N3 N 0 1 Y N N N N N 15.074 1.409 5.911 -4.813 -1.077 0.432 N3 A1A2G 15 A1A2G N4 N4 N 0 1 Y N N N N N 15.558 3.775 5.779 -5.181 1.334 -0.062 N4 A1A2G 16 A1A2G O1 O1 O 0 1 N N N N N N 10.965 1.119 -0.868 3.897 1.798 1.423 O1 A1A2G 17 A1A2G O2 O2 O 0 1 N N N N N N 10.881 -0.471 0.988 3.459 1.490 -0.970 O2 A1A2G 18 A1A2G O3 O3 O 0 1 N N N N N N 13.621 -1.081 2.072 1.620 -0.333 -1.592 O3 A1A2G 19 A1A2G S1 S1 S 0 1 N N N N N N 11.589 0.057 -0.141 3.495 0.961 0.348 S1 A1A2G 20 A1A2G H6 H1 H 0 1 N N N N N N 14.873 -2.451 0.236 2.227 -2.850 -0.700 H6 A1A2G 21 A1A2G H5 H2 H 0 1 N N N N N N 14.683 -1.252 -1.088 2.633 -2.277 0.933 H5 A1A2G 22 A1A2G H15 H3 H 0 1 N N N N N N 13.655 1.050 -0.521 1.107 1.033 0.670 H15 A1A2G 23 A1A2G H16 H4 H 0 1 N N N N N N 13.052 1.319 1.150 1.879 -0.156 1.748 H16 A1A2G 24 A1A2G H1 H5 H 0 1 N N N N N N 12.441 -0.855 -2.083 4.575 -0.946 1.355 H1 A1A2G 25 A1A2G H2 H6 H 0 1 N N N N N N 11.018 -1.753 -1.454 5.545 -0.267 0.023 H2 A1A2G 26 A1A2G H12 H7 H 0 1 N N N N N N 16.036 4.426 2.576 -2.173 2.477 -0.620 H12 A1A2G 27 A1A2G H13 H8 H 0 1 N N N N N N 15.992 5.734 4.875 -4.620 3.378 -0.570 H13 A1A2G 28 A1A2G H4 H9 H 0 1 N N N N N N 12.413 -2.663 0.377 4.595 -2.425 -0.668 H4 A1A2G 29 A1A2G H3 H10 H 0 1 N N N N N N 13.051 -3.100 -1.244 3.843 -1.113 -1.603 H3 A1A2G 30 A1A2G H9 H11 H 0 1 N N N N N N 16.150 -0.616 1.627 -0.084 -2.181 -0.722 H9 A1A2G 31 A1A2G H8 H12 H 0 1 N N N N N N 15.972 0.282 0.082 0.092 -1.800 1.008 H8 A1A2G 32 A1A2G H11 H13 H 0 1 N N N N N N 14.725 -0.576 5.644 -4.201 -3.014 0.796 H11 A1A2G 33 A1A2G H10 H14 H 0 1 N N N N N N 16.349 1.815 1.573 -0.524 0.587 -0.371 H10 A1A2G 34 A1A2G H14 H15 H 0 1 N N N N N N 15.511 3.995 6.753 -6.143 1.419 0.018 H14 A1A2G 35 A1A2G H7 H16 H 0 1 N N N N N N 13.549 -0.399 2.729 1.004 0.394 -1.759 H7 A1A2G 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A2G C1 C2 SING N N 1 A1A2G C1 S1 SING N N 2 A1A2G O1 S1 DOUB N N 3 A1A2G C2 C3 SING N N 4 A1A2G C3 C4 SING N N 5 A1A2G S1 C12 SING N N 6 A1A2G S1 O2 DOUB N N 7 A1A2G C12 C4 SING N N 8 A1A2G C4 C5 SING N N 9 A1A2G C4 O3 SING N N 10 A1A2G C5 N1 SING N N 11 A1A2G N1 C6 SING N N 12 A1A2G C6 N2 DOUB Y N 13 A1A2G C6 C9 SING Y N 14 A1A2G C10 C9 SING Y N 15 A1A2G C10 C11 DOUB Y N 16 A1A2G N2 C7 SING Y N 17 A1A2G C9 C8 DOUB Y N 18 A1A2G C11 N4 SING Y N 19 A1A2G C7 N3 DOUB Y N 20 A1A2G C8 N4 SING Y N 21 A1A2G C8 N3 SING Y N 22 A1A2G C3 H6 SING N N 23 A1A2G C3 H5 SING N N 24 A1A2G C12 H15 SING N N 25 A1A2G C12 H16 SING N N 26 A1A2G C1 H1 SING N N 27 A1A2G C1 H2 SING N N 28 A1A2G C10 H12 SING N N 29 A1A2G C11 H13 SING N N 30 A1A2G C2 H4 SING N N 31 A1A2G C2 H3 SING N N 32 A1A2G C5 H9 SING N N 33 A1A2G C5 H8 SING N N 34 A1A2G C7 H11 SING N N 35 A1A2G N1 H10 SING N N 36 A1A2G N4 H14 SING N N 37 A1A2G O3 H7 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A2G SMILES ACDLabs 12.01 "OC1(CCCS(=O)(=O)C1)CNc1ncnc2[NH]ccc21" A1A2G InChI InChI 1.06 "InChI=1S/C12H16N4O3S/c17-12(3-1-5-20(18,19)7-12)6-14-11-9-2-4-13-10(9)15-8-16-11/h2,4,8,17H,1,3,5-7H2,(H2,13,14,15,16)/t12-/m1/s1" A1A2G InChIKey InChI 1.06 KCBGMKNRIHGMKM-GFCCVEGCSA-N A1A2G SMILES_CANONICAL CACTVS 3.385 "O[C@]1(CCC[S](=O)(=O)C1)CNc2ncnc3[nH]ccc23" A1A2G SMILES CACTVS 3.385 "O[C]1(CCC[S](=O)(=O)C1)CNc2ncnc3[nH]ccc23" A1A2G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)NC[C@@]3(CCCS(=O)(=O)C3)O" A1A2G SMILES "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)NCC3(CCCS(=O)(=O)C3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A2G "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-3-hydroxy-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-1lambda~6~-thiane-1,1-dione" A1A2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-1,1-bis(oxidanylidene)-3-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]thian-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A2G "Create component" 2024-08-16 RCSB A1A2G "Initial release" 2025-05-21 RCSB #