data_A1A2J # _chem_comp.id A1A2J _chem_comp.name "(2S,4S)-4-amino-1-benzoylpyrrolidine-2-carbaldehyde" _chem_comp.type peptide-like _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H14 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-18 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 234.251 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A2J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GCG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A2J C C1 C 0 1 N N N N Y Y 1.980 5.730 -2.222 -2.499 -1.271 -0.399 C A1A2J 1 A1A2J C51 C2 C 0 1 N N S N Y N 2.438 7.151 -1.649 -1.974 -0.260 0.588 C51 A1A2J 2 A1A2J C52 C3 C 0 1 N N N N Y N 4.013 7.021 -1.567 -2.750 1.066 0.445 C52 A1A2J 3 A1A2J CA C4 C 0 1 N N S N Y N 4.235 7.862 -0.092 -1.645 2.138 0.642 CA A1A2J 4 A1A2J C54 C5 C 0 1 N N N N N N 2.852 7.434 0.586 -0.427 1.457 -0.032 C54 A1A2J 5 A1A2J C56 C6 C 0 1 N N N N N N 0.766 7.515 -0.350 0.447 -0.867 0.345 C56 A1A2J 6 A1A2J C58 C7 C 0 1 Y N N N N N 0.081 7.729 0.977 1.839 -0.424 0.114 C58 A1A2J 7 A1A2J C59 C8 C 0 1 Y N N N N N -0.885 8.873 1.170 2.902 -1.134 0.673 C59 A1A2J 8 A1A2J C60 C9 C 0 1 Y N N N N N -1.559 9.036 2.510 4.198 -0.715 0.454 C60 A1A2J 9 A1A2J C61 C10 C 0 1 Y N N N N N -1.278 8.050 3.615 4.445 0.406 -0.318 C61 A1A2J 10 A1A2J C62 C11 C 0 1 Y N N N N N -0.315 6.914 3.418 3.395 1.115 -0.875 C62 A1A2J 11 A1A2J C63 C12 C 0 1 Y N N N N N 0.359 6.736 2.079 2.095 0.703 -0.669 C63 A1A2J 12 A1A2J N55 N1 N 0 1 N N N N N N 2.209 7.323 -0.466 -0.560 0.028 0.304 N55 A1A2J 13 A1A2J N N2 N 0 1 N N N Y Y N 5.222 7.494 0.616 -1.996 3.388 -0.045 N A1A2J 14 A1A2J O O1 O 0 1 N N N N Y Y 1.504 4.874 -1.543 -1.905 -1.473 -1.431 O A1A2J 15 A1A2J O57 O2 O 0 1 N N N N N N 0.048 7.464 -1.313 0.212 -2.038 0.571 O57 A1A2J 16 A1A2J OXT OXT O 0 1 N Y N N Y Y 2.108 5.536 -3.277 -3.625 -1.951 -0.128 OXT A1A2J 17 A1A2J H511 H2 H 0 0 N N N N Y N 2.150 7.956 -2.341 -2.080 -0.644 1.603 H511 A1A2J 18 A1A2J H522 H3 H 0 0 N N N N Y N 4.343 5.974 -1.505 -3.194 1.148 -0.548 H522 A1A2J 19 A1A2J H4 H4 H 0 1 N N N N Y N 4.518 7.515 -2.410 -3.515 1.151 1.216 H4 A1A2J 20 A1A2J HA H6 H 0 1 N N N N Y N 4.211 8.940 -0.312 -1.457 2.315 1.701 HA A1A2J 21 A1A2J H542 H8 H 0 0 N N N N N N 2.927 6.485 1.138 -0.464 1.597 -1.112 H542 A1A2J 22 A1A2J H541 H9 H 0 0 N N N N N N 2.447 8.213 1.249 0.503 1.857 0.372 H541 A1A2J 23 A1A2J H591 H10 H 0 0 N N N N N N -1.090 9.562 0.364 2.711 -2.009 1.276 H591 A1A2J 24 A1A2J H601 H11 H 0 0 N N N N N N -2.241 9.857 2.677 5.022 -1.264 0.886 H601 A1A2J 25 A1A2J H611 H12 H 0 0 N N N N N N -1.778 8.162 4.566 5.461 0.730 -0.486 H611 A1A2J 26 A1A2J H621 H13 H 0 0 N N N N N N -0.107 6.230 4.228 3.595 1.990 -1.476 H621 A1A2J 27 A1A2J H631 H14 H 0 0 N N N N N N 1.032 5.908 1.912 1.276 1.254 -1.109 H631 A1A2J 28 A1A2J H H15 H 0 1 N N N Y Y N 6.074 7.773 0.172 -1.277 4.085 0.083 H A1A2J 29 A1A2J H2 H16 H 0 1 N Y N Y Y N 5.162 7.920 1.519 -2.171 3.225 -1.025 H2 A1A2J 30 A1A2J HXT HXT H 0 1 N Y N N Y Y 1.796 4.662 -3.479 -3.923 -2.588 -0.792 HXT A1A2J 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A2J C C51 SING N N 1 A1A2J C O DOUB N N 2 A1A2J C51 C52 SING N N 3 A1A2J C51 N55 SING N N 4 A1A2J CA C54 SING N N 5 A1A2J CA N SING N N 6 A1A2J C54 N55 SING N N 7 A1A2J C56 C58 SING N N 8 A1A2J C56 N55 SING N N 9 A1A2J C56 O57 DOUB N N 10 A1A2J C58 C59 DOUB Y N 11 A1A2J C58 C63 SING Y N 12 A1A2J C59 C60 SING Y N 13 A1A2J C60 C61 DOUB Y N 14 A1A2J C61 C62 SING Y N 15 A1A2J C62 C63 DOUB Y N 16 A1A2J C OXT SING N N 17 A1A2J C51 H511 SING N N 18 A1A2J C52 H522 SING N N 19 A1A2J C52 H4 SING N N 20 A1A2J CA HA SING N N 21 A1A2J C54 H542 SING N N 22 A1A2J C54 H541 SING N N 23 A1A2J C59 H591 SING N N 24 A1A2J C60 H601 SING N N 25 A1A2J C61 H611 SING N N 26 A1A2J C62 H621 SING N N 27 A1A2J C63 H631 SING N N 28 A1A2J N H SING N N 29 A1A2J N H2 SING N N 30 A1A2J C52 CA SING N N 31 A1A2J OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A2J SMILES ACDLabs 14.52 "NC1CC(C(=O)O)N(C1)C(=O)c1ccccc1" A1A2J InChI InChI 1.06 "InChI=1S/C12H14N2O3/c13-9-6-10(12(16)17)14(7-9)11(15)8-4-2-1-3-5-8/h1-5,9-10H,6-7,13H2,(H,16,17)/t9-,10-/m0/s1" A1A2J InChIKey InChI 1.06 GTODXOQKGULQFP-UWVGGRQHSA-N A1A2J SMILES_CANONICAL CACTVS 3.385 "N[C@H]1C[C@H](N(C1)C(=O)c2ccccc2)C(O)=O" A1A2J SMILES CACTVS 3.385 "N[CH]1C[CH](N(C1)C(=O)c2ccccc2)C(O)=O" A1A2J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2C[C@H](C[C@H]2C(=O)O)N" A1A2J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2CC(CC2C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A2J "SYSTEMATIC NAME" ACDLabs 14.52 "(4S)-4-amino-1-benzoyl-L-proline" A1A2J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S},4~{S})-4-azanyl-1-(phenylcarbonyl)pyrrolidine-2-carboxylic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1A2J _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A2J "Create component" 2024-08-18 RCSB A1A2J "Modify backbone" 2024-09-25 PDBE A1A2J "Modify PCM" 2024-09-27 PDBE A1A2J "Modify linking type" 2024-10-12 RCSB A1A2J "Initial release" 2024-10-23 RCSB #