data_A1A2Q
#
_chem_comp.id A1A2Q
_chem_comp.name "N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H19 F3 N6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-08-19
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 372.412
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1A2Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9D51
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1A2Q C10 C1 C 0 1 Y N N N N N 11.443 -14.820 17.861 1.140 4.104 0.040 C10 A1A2Q 1
A1A2Q C17 C2 C 0 1 Y N N N N N 17.633 -16.653 15.305 -3.977 -0.874 -0.020 C17 A1A2Q 2
A1A2Q C24 C3 C 0 1 N N N N N N 14.354 -11.534 14.768 4.115 -1.290 0.672 C24 A1A2Q 3
A1A2Q N01 N1 N 0 1 N N N N N N 15.443 -10.040 12.570 6.894 -1.749 1.357 N01 A1A2Q 4
A1A2Q C02 C4 C 0 1 N N N N N N 16.305 -10.294 13.807 6.278 -2.459 0.228 C02 A1A2Q 5
A1A2Q C03 C5 C 0 1 N N N N N N 17.188 -11.568 13.765 6.459 -1.639 -1.050 C03 A1A2Q 6
A1A2Q C04 C6 C 0 1 N N N N N N 16.189 -12.668 13.315 5.789 -0.274 -0.880 C04 A1A2Q 7
A1A2Q C05 C7 C 0 1 N N N N N N 15.020 -12.844 14.359 4.296 -0.470 -0.606 C05 A1A2Q 8
A1A2Q C06 C8 C 0 1 N N N N N N 13.824 -13.616 13.820 3.626 0.895 -0.436 C06 A1A2Q 9
A1A2Q N07 N2 N 0 1 N N N N N N 12.821 -13.355 14.816 2.179 0.714 -0.293 N07 A1A2Q 10
A1A2Q C08 C9 C 0 1 Y N N N N N 12.722 -14.136 15.998 1.357 1.815 -0.125 C08 A1A2Q 11
A1A2Q N09 N3 N 0 1 Y N N N N N 11.632 -14.097 16.734 1.894 3.026 -0.113 N09 A1A2Q 12
A1A2Q C11 C10 C 0 1 Y N N N N N 12.493 -15.605 18.311 -0.226 3.958 0.188 C11 A1A2Q 13
A1A2Q C12 C11 C 0 1 Y N N N N N 13.650 -15.589 17.476 -0.764 2.670 0.165 C12 A1A2Q 14
A1A2Q N13 N4 N 0 1 N N N N N N 14.764 -16.374 17.819 -2.130 2.475 0.310 N13 A1A2Q 15
A1A2Q C14 C12 C 0 1 Y N N N N N 15.872 -16.506 16.973 -2.667 1.202 0.177 C14 A1A2Q 16
A1A2Q N15 N5 N 0 1 Y N N N N N 16.900 -17.177 17.430 -1.975 0.117 0.015 N15 A1A2Q 17
A1A2Q C16 C13 C 0 1 Y N N N N N 17.879 -17.252 16.544 -2.652 -1.012 -0.094 C16 A1A2Q 18
A1A2Q C18 C14 C 0 1 N N N N N N 18.546 -16.495 14.065 -4.988 -1.987 -0.107 C18 A1A2Q 19
A1A2Q F19 F1 F 0 1 N N N N N N 19.696 -17.282 14.237 -5.240 -2.490 1.174 F19 A1A2Q 20
A1A2Q F20 F2 F 0 1 N N N N N N 18.736 -15.145 13.876 -6.177 -1.495 -0.657 F20 A1A2Q 21
A1A2Q F21 F3 F 0 1 N N N N N N 17.840 -16.780 12.918 -4.487 -3.010 -0.919 F21 A1A2Q 22
A1A2Q S22 S1 S 0 1 Y N N N N N 16.103 -15.918 15.324 -4.337 0.836 0.204 S22 A1A2Q 23
A1A2Q N23 N6 N 0 1 Y N N N N N 13.711 -14.906 16.349 0.052 1.633 0.003 N23 A1A2Q 24
A1A2Q C25 C15 C 0 1 N N N N N N 15.383 -10.440 15.066 4.786 -2.655 0.502 C25 A1A2Q 25
A1A2Q H1 H1 H 0 1 N N N N N N 10.504 -14.787 18.393 1.588 5.087 0.053 H1 A1A2Q 26
A1A2Q H2 H2 H 0 1 N N N N N N 13.702 -11.196 13.949 4.572 -0.763 1.510 H2 A1A2Q 27
A1A2Q H3 H3 H 0 1 N N N N N N 13.749 -11.709 15.670 3.052 -1.429 0.867 H3 A1A2Q 28
A1A2Q H4 H4 H 0 1 N N N N N N 14.916 -9.200 12.697 7.880 -1.607 1.200 H4 A1A2Q 29
A1A2Q H5 H5 H 0 1 N N N N N N 16.032 -9.945 11.767 6.426 -0.872 1.531 H5 A1A2Q 30
A1A2Q H7 H7 H 0 1 N N N N N N 16.960 -9.424 13.962 6.756 -3.431 0.107 H7 A1A2Q 31
A1A2Q H8 H8 H 0 1 N N N N N N 17.604 -11.794 14.758 7.522 -1.500 -1.245 H8 A1A2Q 32
A1A2Q H9 H9 H 0 1 N N N N N N 18.008 -11.457 13.040 6.002 -2.166 -1.888 H9 A1A2Q 33
A1A2Q H10 H10 H 0 1 N N N N N N 15.761 -12.386 12.342 6.246 0.253 -0.042 H10 A1A2Q 34
A1A2Q H11 H11 H 0 1 N N N N N N 16.728 -13.622 13.216 5.918 0.310 -1.791 H11 A1A2Q 35
A1A2Q H12 H12 H 0 1 N N N N N N 15.414 -13.351 15.252 3.839 -0.997 -1.444 H12 A1A2Q 36
A1A2Q H13 H13 H 0 1 N N N N N N 13.516 -13.237 12.834 4.020 1.385 0.454 H13 A1A2Q 37
A1A2Q H14 H14 H 0 1 N N N N N N 14.043 -14.691 13.747 3.830 1.512 -1.311 H14 A1A2Q 38
A1A2Q H15 H15 H 0 1 N N N N N N 12.959 -12.410 15.114 1.797 -0.177 -0.316 H15 A1A2Q 39
A1A2Q H16 H16 H 0 1 N N N N N N 12.440 -16.183 19.222 -0.863 4.820 0.319 H16 A1A2Q 40
A1A2Q H17 H17 H 0 1 N N N N N N 14.765 -16.854 18.696 -2.709 3.228 0.503 H17 A1A2Q 41
A1A2Q H18 H18 H 0 1 N N N N N N 18.813 -17.747 16.765 -2.171 -1.969 -0.231 H18 A1A2Q 42
A1A2Q H19 H19 H 0 1 N N N N N N 15.987 -10.722 15.941 4.657 -3.239 1.413 H19 A1A2Q 43
A1A2Q H20 H20 H 0 1 N N N N N N 14.870 -9.488 15.266 4.329 -3.182 -0.336 H20 A1A2Q 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1A2Q N01 C02 SING N N 1
A1A2Q F21 C18 SING N N 2
A1A2Q C04 C03 SING N N 3
A1A2Q C04 C05 SING N N 4
A1A2Q C03 C02 SING N N 5
A1A2Q C02 C25 SING N N 6
A1A2Q C06 C05 SING N N 7
A1A2Q C06 N07 SING N N 8
A1A2Q F20 C18 SING N N 9
A1A2Q C18 F19 SING N N 10
A1A2Q C18 C17 SING N N 11
A1A2Q C05 C24 SING N N 12
A1A2Q C24 C25 SING N N 13
A1A2Q N07 C08 SING N N 14
A1A2Q C17 S22 SING Y N 15
A1A2Q C17 C16 DOUB Y N 16
A1A2Q S22 C14 SING Y N 17
A1A2Q C08 N23 DOUB Y N 18
A1A2Q C08 N09 SING Y N 19
A1A2Q N23 C12 SING Y N 20
A1A2Q C16 N15 SING Y N 21
A1A2Q N09 C10 DOUB Y N 22
A1A2Q C14 N15 DOUB Y N 23
A1A2Q C14 N13 SING N N 24
A1A2Q C12 N13 SING N N 25
A1A2Q C12 C11 DOUB Y N 26
A1A2Q C10 C11 SING Y N 27
A1A2Q C10 H1 SING N N 28
A1A2Q C24 H2 SING N N 29
A1A2Q C24 H3 SING N N 30
A1A2Q N01 H4 SING N N 31
A1A2Q N01 H5 SING N N 32
A1A2Q C02 H7 SING N N 33
A1A2Q C03 H8 SING N N 34
A1A2Q C03 H9 SING N N 35
A1A2Q C04 H10 SING N N 36
A1A2Q C04 H11 SING N N 37
A1A2Q C05 H12 SING N N 38
A1A2Q C06 H13 SING N N 39
A1A2Q C06 H14 SING N N 40
A1A2Q N07 H15 SING N N 41
A1A2Q C11 H16 SING N N 42
A1A2Q N13 H17 SING N N 43
A1A2Q C16 H18 SING N N 44
A1A2Q C25 H19 SING N N 45
A1A2Q C25 H20 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1A2Q SMILES ACDLabs 12.01 "NC1CCC(CC1)CNc1nc(Nc2ncc(s2)C(F)(F)F)ccn1"
A1A2Q InChI InChI 1.06 "InChI=1S/C15H19F3N6S/c16-15(17,18)11-8-22-14(25-11)24-12-5-6-20-13(23-12)21-7-9-1-3-10(19)4-2-9/h5-6,8-10H,1-4,7,19H2,(H2,20,21,22,23,24)/t9-,10+"
A1A2Q InChIKey InChI 1.06 LWEHRGMIDUWUJW-AOOOYVTPSA-N
A1A2Q SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CC[C@@H](CC1)CNc2nccc(Nc3sc(cn3)C(F)(F)F)n2"
A1A2Q SMILES CACTVS 3.385 "N[CH]1CC[CH](CC1)CNc2nccc(Nc3sc(cn3)C(F)(F)F)n2"
A1A2Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1Nc2ncc(s2)C(F)(F)F)NCC3CCC(CC3)N"
A1A2Q SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1Nc2ncc(s2)C(F)(F)F)NCC3CCC(CC3)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1A2Q "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine"
A1A2Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}2-[(4-azanylcyclohexyl)methyl]-~{N}4-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1A2Q "Create component" 2024-08-19 RCSB
A1A2Q "Initial release" 2025-04-02 RCSB
#