data_A1A2S
#
_chem_comp.id A1A2S
_chem_comp.name "N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 Cl N6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-08-19
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.019
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1A2S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9D4X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1A2S N1 N1 N 0 1 Y N N N N N 3.846 -13.270 47.717 -2.628 -1.174 0.267 N1 A1A2S 1
A1A2S N3 N2 N 0 1 N N N N N N 4.982 -14.963 48.883 -4.832 -1.975 0.015 N3 A1A2S 2
A1A2S C4 C1 C 0 1 Y N N N N N 1.692 -13.475 49.365 -1.574 -3.650 0.033 C4 A1A2S 3
A1A2S C5 C2 C 0 1 Y N N N N N 6.101 -15.148 48.109 -5.331 -0.680 0.030 C5 A1A2S 4
A1A2S C6 C3 C 0 1 Y N N N N N 7.910 -15.119 46.499 -6.574 1.445 -0.014 C6 A1A2S 5
A1A2S C7 C4 C 0 1 Y N N N N N 8.066 -16.025 47.498 -5.259 1.543 0.187 C7 A1A2S 6
A1A2S C8 C5 C 0 1 N N N N N N 8.780 -14.851 45.349 -7.547 2.594 -0.083 C8 A1A2S 7
A1A2S C10 C6 C 0 1 N N N N N N 9.048 -13.443 44.928 -8.681 2.621 0.944 C10 A1A2S 8
A1A2S C13 C7 C 0 1 N N N N N N 4.652 -9.421 46.811 1.445 1.734 -0.412 C13 A1A2S 9
A1A2S C15 C8 C 0 1 N N S N N N 5.690 -8.299 44.851 3.528 0.823 -1.447 C15 A1A2S 10
A1A2S C17 C9 C 0 1 N N N N N N 6.204 -10.710 45.322 3.165 0.618 1.016 C17 A1A2S 11
A1A2S C20 C10 C 0 1 Y N N N N N 8.166 -9.232 41.117 7.421 0.583 0.375 C20 A1A2S 12
A1A2S C21 C11 C 0 1 Y N N N N N 9.451 -9.403 41.591 7.936 -0.701 0.344 C21 A1A2S 13
A1A2S C22 C12 C 0 1 Y N N N N N 9.631 -9.658 42.937 7.096 -1.778 0.130 C22 A1A2S 14
A1A2S C1 C13 C 0 1 Y N N N N N 2.747 -12.499 47.586 -1.321 -1.378 0.332 C1 A1A2S 15
A1A2S C11 C14 C 0 1 N N N N N N 3.806 -11.456 45.624 0.970 -0.502 0.599 C11 A1A2S 16
A1A2S C12 C15 C 0 1 N N R N N N 5.014 -10.797 46.277 1.665 0.844 0.814 C12 A1A2S 17
A1A2S C14 C16 C 0 1 N N N N N N 4.423 -8.419 45.692 2.029 1.050 -1.649 C14 A1A2S 18
A1A2S C16 C17 C 0 1 N N R N N N 6.047 -9.654 44.223 3.749 -0.066 -0.222 C16 A1A2S 19
A1A2S C18 C18 C 0 1 Y N N N N N 7.249 -9.573 43.307 5.226 -0.289 -0.022 C18 A1A2S 20
A1A2S C19 C19 C 0 1 Y N N N N N 7.075 -9.313 41.956 6.065 0.788 0.192 C19 A1A2S 21
A1A2S C2 C20 C 0 1 Y N N N N N 3.858 -14.158 48.710 -3.463 -2.192 0.083 C2 A1A2S 22
A1A2S C23 C21 C 0 1 Y N N N N N 8.540 -9.737 43.790 5.741 -1.572 -0.053 C23 A1A2S 23
A1A2S C3 C22 C 0 1 Y N N N N N 2.779 -14.280 49.587 -2.943 -3.482 -0.041 C3 A1A2S 24
A1A2S C9 C23 C 0 1 N N N N N N 8.171 -14.294 44.102 -8.980 2.281 -0.518 C9 A1A2S 25
A1A2S N2 N3 N 0 1 Y N N N N N 1.655 -12.568 48.385 -0.800 -2.591 0.217 N2 A1A2S 26
A1A2S N4 N4 N 0 1 Y N N N N N 7.041 -16.055 48.419 -4.617 0.389 0.201 N4 A1A2S 27
A1A2S N5 N5 N 0 1 N N N N N N 2.724 -11.608 46.583 -0.478 -0.297 0.524 N5 A1A2S 28
A1A2S N6 N6 N 0 1 N N N N N N 5.522 -7.260 43.802 4.089 0.167 -2.636 N6 A1A2S 29
A1A2S S1 S1 S 0 1 Y N N N N N 6.476 -14.293 46.713 -6.975 -0.262 -0.180 S1 A1A2S 30
A1A2S CL1 CL1 CL 0 0 N N N N N N 7.882 -8.902 39.428 8.474 1.935 0.651 CL1 A1A2S 31
A1A2S H1 H1 H 0 1 N N N N N N 4.972 -15.504 49.724 -5.440 -2.729 -0.043 H1 A1A2S 32
A1A2S H2 H2 H 0 1 N N N N N N 0.831 -13.578 50.008 -1.140 -4.634 -0.059 H2 A1A2S 33
A1A2S H3 H3 H 0 1 N N N N N N 8.927 -16.673 47.566 -4.758 2.491 0.319 H3 A1A2S 34
A1A2S H4 H4 H 0 1 N N N N N N 9.609 -15.557 45.196 -7.124 3.550 -0.392 H4 A1A2S 35
A1A2S H5 H5 H 0 1 N N N N N N 10.045 -13.161 44.559 -8.723 1.808 1.669 H5 A1A2S 36
A1A2S H6 H6 H 0 1 N N N N N N 8.620 -12.608 45.502 -9.004 3.595 1.311 H6 A1A2S 37
A1A2S H7 H7 H 0 1 N N N N N N 5.473 -9.060 47.449 0.376 1.895 -0.556 H7 A1A2S 38
A1A2S H8 H8 H 0 1 N N N N N N 3.732 -9.503 47.409 1.940 2.692 -0.258 H8 A1A2S 39
A1A2S H9 H9 H 0 1 N N N N N N 6.516 -8.001 45.514 4.023 1.782 -1.294 H9 A1A2S 40
A1A2S H10 H10 H 0 1 N N N N N N 6.335 -11.691 44.842 3.660 1.577 1.169 H10 A1A2S 41
A1A2S H11 H11 H 0 1 N N N N N N 7.102 -10.467 45.909 3.322 -0.016 1.889 H11 A1A2S 42
A1A2S H12 H12 H 0 1 N N N N N N 10.298 -9.339 40.924 8.994 -0.862 0.487 H12 A1A2S 43
A1A2S H13 H13 H 0 1 N N N N N N 10.628 -9.797 43.328 7.498 -2.780 0.105 H13 A1A2S 44
A1A2S H14 H14 H 0 1 N N N N N N 3.462 -10.831 44.787 1.322 -0.948 -0.331 H14 A1A2S 45
A1A2S H15 H15 H 0 1 N N N N N N 4.096 -12.448 45.246 1.201 -1.167 1.431 H15 A1A2S 46
A1A2S H16 H16 H 0 1 N N N N N N 5.316 -11.421 47.131 1.249 1.331 1.696 H16 A1A2S 47
A1A2S H17 H17 H 0 1 N N N N N N 4.175 -7.438 46.123 1.534 0.091 -1.803 H17 A1A2S 48
A1A2S H18 H18 H 0 1 N N N N N N 3.592 -8.761 45.057 1.872 1.683 -2.522 H18 A1A2S 49
A1A2S H19 H19 H 0 1 N N N N N N 5.188 -9.958 43.606 3.254 -1.025 -0.375 H19 A1A2S 50
A1A2S H20 H20 H 0 1 N N N N N N 6.080 -9.173 41.559 5.662 1.790 0.216 H20 A1A2S 51
A1A2S H21 H21 H 0 1 N N N N N N 8.697 -9.928 44.841 5.085 -2.413 -0.221 H21 A1A2S 52
A1A2S H22 H22 H 0 1 N N N N N N 2.800 -14.981 50.408 -3.597 -4.328 -0.191 H22 A1A2S 53
A1A2S H23 H23 H 0 1 N N N N N N 7.090 -14.092 44.061 -9.500 3.031 -1.113 H23 A1A2S 54
A1A2S H24 H24 H 0 1 N N N N N N 8.516 -14.646 43.118 -9.219 1.244 -0.754 H24 A1A2S 55
A1A2S H25 H25 H 0 1 N N N N N N 2.613 -10.713 47.014 -0.847 0.596 0.610 H25 A1A2S 56
A1A2S H26 H26 H 0 1 N N N N N N 5.290 -6.387 44.231 3.956 0.735 -3.459 H26 A1A2S 57
A1A2S H27 H27 H 0 1 N N N N N N 6.375 -7.163 43.289 5.065 -0.052 -2.501 H27 A1A2S 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1A2S CL1 C20 SING N N 1
A1A2S C20 C21 DOUB Y N 2
A1A2S C20 C19 SING Y N 3
A1A2S C21 C22 SING Y N 4
A1A2S C19 C18 DOUB Y N 5
A1A2S C22 C23 DOUB Y N 6
A1A2S C18 C23 SING Y N 7
A1A2S C18 C16 SING N N 8
A1A2S N6 C15 SING N N 9
A1A2S C9 C10 SING N N 10
A1A2S C9 C8 SING N N 11
A1A2S C16 C15 SING N N 12
A1A2S C16 C17 SING N N 13
A1A2S C15 C14 SING N N 14
A1A2S C10 C8 SING N N 15
A1A2S C17 C12 SING N N 16
A1A2S C8 C6 SING N N 17
A1A2S C11 C12 SING N N 18
A1A2S C11 N5 SING N N 19
A1A2S C14 C13 SING N N 20
A1A2S C12 C13 SING N N 21
A1A2S C6 S1 SING Y N 22
A1A2S C6 C7 DOUB Y N 23
A1A2S N5 C1 SING N N 24
A1A2S S1 C5 SING Y N 25
A1A2S C7 N4 SING Y N 26
A1A2S C1 N1 DOUB Y N 27
A1A2S C1 N2 SING Y N 28
A1A2S N1 C2 SING Y N 29
A1A2S C5 N4 DOUB Y N 30
A1A2S C5 N3 SING N N 31
A1A2S N2 C4 DOUB Y N 32
A1A2S C2 N3 SING N N 33
A1A2S C2 C3 DOUB Y N 34
A1A2S C4 C3 SING Y N 35
A1A2S N3 H1 SING N N 36
A1A2S C4 H2 SING N N 37
A1A2S C7 H3 SING N N 38
A1A2S C8 H4 SING N N 39
A1A2S C10 H5 SING N N 40
A1A2S C10 H6 SING N N 41
A1A2S C13 H7 SING N N 42
A1A2S C13 H8 SING N N 43
A1A2S C15 H9 SING N N 44
A1A2S C17 H10 SING N N 45
A1A2S C17 H11 SING N N 46
A1A2S C21 H12 SING N N 47
A1A2S C22 H13 SING N N 48
A1A2S C11 H14 SING N N 49
A1A2S C11 H15 SING N N 50
A1A2S C12 H16 SING N N 51
A1A2S C14 H17 SING N N 52
A1A2S C14 H18 SING N N 53
A1A2S C16 H19 SING N N 54
A1A2S C19 H20 SING N N 55
A1A2S C23 H21 SING N N 56
A1A2S C3 H22 SING N N 57
A1A2S C9 H23 SING N N 58
A1A2S C9 H24 SING N N 59
A1A2S N5 H25 SING N N 60
A1A2S N6 H26 SING N N 61
A1A2S N6 H27 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1A2S SMILES ACDLabs 12.01 "Clc1cccc(c1)C1CC(CCC1N)CNc1nc(Nc2ncc(s2)C2CC2)ccn1"
A1A2S InChI InChI 1.06 "InChI=1S/C23H27ClN6S/c24-17-3-1-2-16(11-17)18-10-14(4-7-19(18)25)12-27-22-26-9-8-21(29-22)30-23-28-13-20(31-23)15-5-6-15/h1-3,8-9,11,13-15,18-19H,4-7,10,12,25H2,(H2,26,27,28,29,30)/t14-,18-,19+/m1/s1"
A1A2S InChIKey InChI 1.06 RPZYQSABIKMHOM-ZMYBRWDISA-N
A1A2S SMILES_CANONICAL CACTVS 3.385 "N[C@H]1CC[C@@H](CNc2nccc(Nc3sc(cn3)C4CC4)n2)C[C@@H]1c5cccc(Cl)c5"
A1A2S SMILES CACTVS 3.385 "N[CH]1CC[CH](CNc2nccc(Nc3sc(cn3)C4CC4)n2)C[CH]1c5cccc(Cl)c5"
A1A2S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)[C@H]2C[C@@H](CC[C@@H]2N)CNc3nccc(n3)Nc4ncc(s4)C5CC5"
A1A2S SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)C2CC(CCC2N)CNc3nccc(n3)Nc4ncc(s4)C5CC5"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1A2S "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine"
A1A2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}2-[[(1~{R},3~{R},4~{S})-4-azanyl-3-(3-chlorophenyl)cyclohexyl]methyl]-~{N}4-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1A2S "Create component" 2024-08-19 RCSB
A1A2S "Initial release" 2025-04-02 RCSB
#