data_A1A2Z # _chem_comp.id A1A2Z _chem_comp.name "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-tryptophan" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-21 _chem_comp.pdbx_modified_date 2025-02-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A2Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BLV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A2Z N N1 N 0 1 N N N Y Y N 7.679 0.585 82.318 -0.699 0.946 -0.208 N A1A2Z 1 A1A2Z N1 N2 N 0 1 Y N N N N N 10.560 4.535 83.491 1.176 -3.616 -0.192 N1 A1A2Z 2 A1A2Z CG C1 C 0 1 Y N N N N N 8.211 -2.391 82.123 -3.473 1.839 0.173 CG A1A2Z 3 A1A2Z CD1 C2 C 0 1 Y N N N N N 9.572 -2.397 82.189 -4.529 2.084 -0.618 CD1 A1A2Z 4 A1A2Z CD2 C3 C 0 1 Y N N N N N 7.754 -3.265 83.181 -3.704 0.537 0.805 CD2 A1A2Z 5 A1A2Z CE2 C4 C 0 1 Y N N N N N 8.906 -3.759 83.831 -4.943 0.083 0.316 CE2 A1A2Z 6 A1A2Z CE3 C5 C 0 1 Y N N N N N 6.499 -3.680 83.643 -2.983 -0.244 1.709 CE3 A1A2Z 7 A1A2Z CZ3 C6 C 0 1 Y N N N N N 6.430 -4.544 84.713 -3.485 -1.448 2.117 CZ3 A1A2Z 8 A1A2Z C2A C7 C 0 1 N N N N N N 8.560 5.225 84.689 -0.966 -4.651 -0.754 C2A A1A2Z 9 A1A2Z C4 C8 C 0 1 Y N N N N N 9.227 2.507 82.117 0.353 -1.117 -0.946 C4 A1A2Z 10 A1A2Z C5 C9 C 0 1 Y N N N N N 10.599 2.731 81.902 1.632 -1.326 -0.456 C5 A1A2Z 11 A1A2Z CA C10 C 0 1 N N S N Y N 6.697 -0.342 81.744 -1.153 2.294 -0.576 CA A1A2Z 12 A1A2Z CH2 C11 C 0 1 Y N N N N N 7.581 -5.017 85.338 -4.707 -1.901 1.638 CH2 A1A2Z 13 A1A2Z C2 C12 C 0 1 Y N N N N N 9.262 4.345 83.703 -0.049 -3.459 -0.652 C2 A1A2Z 14 A1A2Z C3 C13 C 0 1 Y N N N N N 8.559 3.332 83.036 -0.504 -2.208 -1.045 C3 A1A2Z 15 A1A2Z C4A C14 C 0 1 N N N N N N 8.463 1.413 81.386 -0.099 0.260 -1.360 C4A A1A2Z 16 A1A2Z C5A C15 C 0 1 N N N N N N 11.396 1.883 80.951 2.597 -0.175 -0.329 C5A A1A2Z 17 A1A2Z C6 C16 C 0 1 Y N N N N N 11.207 3.752 82.614 2.012 -2.602 -0.085 C6 A1A2Z 18 A1A2Z C C17 C 0 1 N N N N Y Y 5.667 -0.765 82.810 -0.000 3.259 -0.467 C A1A2Z 19 A1A2Z CB C18 C 0 1 N N N N N N 7.369 -1.602 81.154 -2.274 2.730 0.370 CB A1A2Z 20 A1A2Z CZ2 C19 C 0 1 Y N N N N N 8.833 -4.639 84.911 -5.435 -1.146 0.744 CZ2 A1A2Z 21 A1A2Z NE1 N3 N 0 1 Y N N N N N 9.997 -3.215 83.203 -5.417 1.046 -0.546 NE1 A1A2Z 22 A1A2Z O O1 O 0 1 N N N N Y Y 4.745 -1.547 82.453 1.087 2.864 -0.120 O A1A2Z 23 A1A2Z OXT O2 O 0 1 N N N N Y Y 5.822 -0.295 83.964 -0.182 4.556 -0.757 OXT A1A2Z 24 A1A2Z O3P O3 O 0 1 N N N N N N 10.371 -0.247 79.033 4.736 1.370 1.620 O3P A1A2Z 25 A1A2Z O1P O4 O 0 1 N N N N N N 10.645 1.508 77.180 5.444 1.035 -0.780 O1P A1A2Z 26 A1A2Z O3 O5 O 0 1 N N N N N N 7.232 3.169 83.289 -1.768 -2.052 -1.519 O3 A1A2Z 27 A1A2Z O2P O6 O 0 1 N N N N N N 12.634 0.579 78.433 6.362 -0.578 0.931 O2P A1A2Z 28 A1A2Z O4P O7 O 0 1 N N N N N N 10.966 2.097 79.573 3.838 -0.651 0.197 O4P A1A2Z 29 A1A2Z P P1 P 0 1 N N N N N N 11.156 0.924 78.481 5.102 0.310 0.465 P A1A2Z 30 A1A2Z H H1 H 0 1 N N N Y Y N 8.327 0.041 82.852 -1.456 0.403 0.182 H A1A2Z 31 A1A2Z HD1 H3 H 0 1 N N N N N N 10.223 -1.837 81.535 -4.658 2.969 -1.223 HD1 A1A2Z 32 A1A2Z HE3 H4 H 0 1 N N N N N N 5.597 -3.327 83.166 -2.031 0.101 2.086 HE3 A1A2Z 33 A1A2Z HZ3 H5 H 0 1 N N N N N N 5.463 -4.861 85.075 -2.927 -2.052 2.817 HZ3 A1A2Z 34 A1A2Z H2A1 H6 H 0 0 N N N N N N 9.276 5.943 85.116 -1.523 -4.761 0.176 H2A1 A1A2Z 35 A1A2Z H2A2 H7 H 0 0 N N N N N N 7.751 5.772 84.182 -1.663 -4.504 -1.580 H2A2 A1A2Z 36 A1A2Z H2A3 H8 H 0 0 N N N N N N 8.136 4.608 85.495 -0.375 -5.549 -0.932 H2A3 A1A2Z 37 A1A2Z HA H9 H 0 1 N N N N Y N 6.157 0.167 80.932 -1.525 2.285 -1.600 HA A1A2Z 38 A1A2Z HH2 H10 H 0 1 N N N N N N 7.489 -5.694 86.174 -5.090 -2.855 1.969 HH2 A1A2Z 39 A1A2Z H4A H11 H 0 1 N Y N N N N 7.780 1.878 80.660 -0.838 0.175 -2.157 H4A A1A2Z 40 A1A2Z H4B H12 H 0 1 N N N N N N 9.180 0.771 80.854 0.757 0.831 -1.717 H4B A1A2Z 41 A1A2Z H5A1 H13 H 0 0 N N N N N N 11.257 0.823 81.211 2.765 0.269 -1.310 H5A1 A1A2Z 42 A1A2Z H5A2 H14 H 0 0 N N N N N N 12.460 2.146 81.041 2.181 0.575 0.344 H5A2 A1A2Z 43 A1A2Z H6 H15 H 0 1 N N N N N N 12.261 3.928 82.454 3.008 -2.771 0.298 H6 A1A2Z 44 A1A2Z HB2 H16 H 0 1 N N N N N N 6.577 -2.264 80.773 -2.550 3.762 0.155 HB2 A1A2Z 45 A1A2Z HB3 H17 H 0 1 N N N N N N 8.014 -1.286 80.321 -1.930 2.654 1.401 HB3 A1A2Z 46 A1A2Z HZ2 H18 H 0 1 N N N N N N 9.725 -5.009 85.394 -6.384 -1.507 0.378 HZ2 A1A2Z 47 A1A2Z HE1 H19 H 0 1 N N N N N N 10.951 -3.388 83.446 -6.257 0.996 -1.029 HE1 A1A2Z 48 A1A2Z HXT H20 H 0 1 N N N N Y Y 5.134 -0.620 84.534 0.587 5.137 -0.673 HXT A1A2Z 49 A1A2Z HOP3 H21 H 0 0 N N N N N N 9.646 -0.445 78.452 4.502 0.964 2.466 HOP3 A1A2Z 50 A1A2Z HO3 H22 H 0 1 N N N N N N 6.951 3.809 83.932 -1.844 -2.159 -2.477 HO3 A1A2Z 51 A1A2Z HOP2 H23 H 0 0 N N N N N N 12.983 0.796 77.576 7.161 -0.064 1.110 HOP2 A1A2Z 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A2Z O1P P DOUB N N 1 A1A2Z O2P P SING N N 2 A1A2Z P O3P SING N N 3 A1A2Z P O4P SING N N 4 A1A2Z O4P C5A SING N N 5 A1A2Z C5A C5 SING N N 6 A1A2Z CB CA SING N N 7 A1A2Z CB CG SING N N 8 A1A2Z C4A C4 SING N N 9 A1A2Z C4A N SING N N 10 A1A2Z CA N SING N N 11 A1A2Z CA C SING N N 12 A1A2Z C5 C4 DOUB Y N 13 A1A2Z C5 C6 SING Y N 14 A1A2Z C4 C3 SING Y N 15 A1A2Z CG CD1 DOUB Y N 16 A1A2Z CG CD2 SING Y N 17 A1A2Z CD1 NE1 SING Y N 18 A1A2Z O C DOUB N N 19 A1A2Z C6 N1 DOUB Y N 20 A1A2Z C OXT SING N N 21 A1A2Z C3 O3 SING N N 22 A1A2Z C3 C2 DOUB Y N 23 A1A2Z CD2 CE3 DOUB Y N 24 A1A2Z CD2 CE2 SING Y N 25 A1A2Z NE1 CE2 SING Y N 26 A1A2Z N1 C2 SING Y N 27 A1A2Z CE3 CZ3 SING Y N 28 A1A2Z C2 C2A SING N N 29 A1A2Z CE2 CZ2 DOUB Y N 30 A1A2Z CZ3 CH2 DOUB Y N 31 A1A2Z CZ2 CH2 SING Y N 32 A1A2Z N H SING N N 33 A1A2Z CD1 HD1 SING N N 34 A1A2Z CE3 HE3 SING N N 35 A1A2Z CZ3 HZ3 SING N N 36 A1A2Z C2A H2A1 SING N N 37 A1A2Z C2A H2A2 SING N N 38 A1A2Z C2A H2A3 SING N N 39 A1A2Z CA HA SING N N 40 A1A2Z CH2 HH2 SING N N 41 A1A2Z C4A H4A SING N N 42 A1A2Z C4A H4B SING N N 43 A1A2Z C5A H5A1 SING N N 44 A1A2Z C5A H5A2 SING N N 45 A1A2Z C6 H6 SING N N 46 A1A2Z CB HB2 SING N N 47 A1A2Z CB HB3 SING N N 48 A1A2Z CZ2 HZ2 SING N N 49 A1A2Z NE1 HE1 SING N N 50 A1A2Z OXT HXT SING N N 51 A1A2Z O3P HOP3 SING N N 52 A1A2Z O3 HO3 SING N N 53 A1A2Z O2P HOP2 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A2Z SMILES ACDLabs 14.52 "O=P(O)(O)OCc1cnc(C)c(O)c1CNC(Cc1c[NH]c2ccccc21)C(=O)O" A1A2Z InChI InChI 1.06 "InChI=1S/C19H22N3O7P/c1-11-18(23)15(13(8-20-11)10-29-30(26,27)28)9-22-17(19(24)25)6-12-7-21-16-5-3-2-4-14(12)16/h2-5,7-8,17,21-23H,6,9-10H2,1H3,(H,24,25)(H2,26,27,28)/t17-/m0/s1" A1A2Z InChIKey InChI 1.06 GXJCERNIMQVBGG-KRWDZBQOSA-N A1A2Z SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H](Cc2c[nH]c3ccccc23)C(O)=O)c1O" A1A2Z SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](Cc2c[nH]c3ccccc23)C(O)=O)c1O" A1A2Z SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](Cc2c[nH]c3c2cccc3)C(=O)O)O" A1A2Z SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(Cc2c[nH]c3c2cccc3)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A2Z "SYSTEMATIC NAME" ACDLabs 14.52 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-tryptophan" A1A2Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-3-(1~{H}-indol-3-yl)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propanoic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1A2Z _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A2Z "Create component" 2024-08-21 RCSB A1A2Z "Modify PCM" 2024-11-13 RCSB A1A2Z "Modify leaving atom flag" 2024-11-18 RCSB A1A2Z "Initial release" 2025-02-12 RCSB #