data_A1A3C # _chem_comp.id A1A3C _chem_comp.name "N-[3-(dimethylamino)propyl]-1-[(1r,3r)-3-(methylcarbamoyl)cyclobutyl]-2-(3,4,5-trimethoxyphenyl)-1H-1,3-benzimidazole-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H37 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-23 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A3C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A3C C35 C1 C 0 1 N N N N N N 21.908 -4.770 -35.769 -4.697 2.868 -3.076 C35 A1A3C 1 A1A3C C36 C2 C 0 1 Y N N N N N 24.711 -4.894 -35.706 -3.485 1.798 -0.912 C36 A1A3C 2 A1A3C C38 C3 C 0 1 Y N N N N N 27.697 -7.306 -31.447 1.904 -0.304 -0.010 C38 A1A3C 3 A1A3C C27 C4 C 0 1 Y N N N N N 26.166 -4.181 -37.958 -4.941 0.858 1.264 C27 A1A3C 4 A1A3C C30 C5 C 0 1 Y N N N N N 24.792 -4.249 -38.026 -5.597 1.408 0.167 C30 A1A3C 5 A1A3C C29 C6 C 0 1 N N N N N N 28.360 -3.963 -39.001 -6.300 -0.869 2.175 C29 A1A3C 6 A1A3C C02 C7 C 0 1 N N N N N N 28.755 -8.208 -29.396 4.388 -0.372 0.020 C02 A1A3C 7 A1A3C C04 C8 C 0 1 N N N N N N 30.826 -7.797 -27.802 6.823 -0.459 0.047 C04 A1A3C 8 A1A3C C05 C9 C 0 1 N N N N N N 30.730 -7.709 -26.216 7.995 0.505 0.243 C05 A1A3C 9 A1A3C C06 C10 C 0 1 N N N N N N 29.269 -7.373 -25.708 9.313 -0.263 0.125 C06 A1A3C 10 A1A3C C08 C11 C 0 1 N N N N N N 26.985 -8.393 -25.679 11.705 -0.069 0.444 C08 A1A3C 11 A1A3C C09 C12 C 0 1 N N N N N N 28.561 -8.828 -23.854 10.504 1.640 -0.780 C09 A1A3C 12 A1A3C C10 C13 C 0 1 Y N N N N N 28.716 -7.084 -30.497 3.117 0.369 0.134 C10 A1A3C 13 A1A3C C11 C14 C 0 1 Y N N N N N 29.580 -5.985 -30.621 3.132 1.748 0.385 C11 A1A3C 14 A1A3C C12 C15 C 0 1 Y N N N N N 29.459 -5.013 -31.711 1.966 2.444 0.493 C12 A1A3C 15 A1A3C C13 C16 C 0 1 Y N N N N N 28.399 -5.254 -32.653 0.738 1.783 0.351 C13 A1A3C 16 A1A3C C14 C17 C 0 1 Y N N N N N 27.575 -6.333 -32.532 0.717 0.399 0.092 C14 A1A3C 17 A1A3C C16 C18 C 0 1 N N N N N N 25.596 -7.274 -33.842 -1.146 -1.298 -0.252 C16 A1A3C 18 A1A3C C17 C19 C 0 1 N N N N N N 24.603 -7.455 -32.651 -2.410 -1.304 -1.128 C17 A1A3C 19 A1A3C C18 C20 C 0 1 N N N N N N 24.781 -8.989 -32.700 -2.948 -2.412 -0.206 C18 A1A3C 20 A1A3C C19 C21 C 0 1 N N N N N N 23.608 -9.755 -33.236 -2.572 -3.802 -0.651 C19 A1A3C 21 A1A3C C21 C22 C 0 1 N N N N N N 22.980 -8.329 -35.331 -2.612 -6.222 -0.368 C21 A1A3C 22 A1A3C C23 C23 C 0 1 N N N N N N 25.962 -8.780 -33.704 -2.026 -1.842 0.885 C23 A1A3C 23 A1A3C C24 C24 C 0 1 Y N N N N N 26.914 -5.183 -34.360 -1.349 1.181 0.207 C24 A1A3C 24 A1A3C C25 C25 C 0 1 Y N N N N N 26.153 -4.820 -35.631 -2.824 1.256 0.191 C25 A1A3C 25 A1A3C C26 C26 C 0 1 Y N N N N N 26.868 -4.476 -36.784 -3.560 0.786 1.281 C26 A1A3C 26 A1A3C C32 C27 C 0 1 N N N N N N 24.098 -2.552 -39.529 -7.550 2.660 0.691 C32 A1A3C 27 A1A3C C33 C28 C 0 1 Y N N N N N 24.074 -4.590 -36.919 -4.866 1.873 -0.922 C33 A1A3C 28 A1A3C N03 N1 N 0 1 N N N N N N 29.651 -8.510 -28.297 5.561 0.277 0.159 N03 A1A3C 29 A1A3C N07 N2 N 0 1 N N N N N N 28.454 -8.602 -25.323 10.438 0.663 0.314 N07 A1A3C 30 A1A3C N15 N3 N 0 1 Y N N N N N 26.685 -6.308 -33.555 -0.617 0.043 0.006 N15 A1A3C 31 A1A3C N20 N4 N 0 1 N N N N N N 22.791 -9.463 -34.405 -2.977 -4.871 0.064 N20 A1A3C 32 A1A3C N37 N5 N 0 1 Y N N N N N 28.009 -4.500 -33.832 -0.543 2.199 0.397 N37 A1A3C 33 A1A3C O01 O1 O 0 1 N N N N N N 27.854 -9.081 -29.468 4.377 -1.568 -0.199 O01 A1A3C 34 A1A3C O22 O2 O 0 1 N N N N N N 23.240 -10.807 -32.630 -1.906 -3.960 -1.652 O22 A1A3C 35 A1A3C O28 O3 O 0 1 N N N N N N 26.947 -3.798 -39.109 -5.659 0.399 2.325 O28 A1A3C 36 A1A3C O31 O4 O 0 1 N N N N N N 24.100 -3.936 -39.275 -6.955 1.477 0.152 O31 A1A3C 37 A1A3C O34 O5 O 0 1 N N N N N N 22.611 -4.661 -36.998 -5.510 2.411 -1.993 O34 A1A3C 38 A1A3C H351 H1 H 0 0 N N N N N N 20.827 -4.814 -35.967 -4.116 2.034 -3.472 H351 A1A3C 39 A1A3C H352 H2 H 0 0 N N N N N N 22.223 -5.686 -35.247 -5.334 3.272 -3.863 H352 A1A3C 40 A1A3C H353 H3 H 0 0 N N N N N N 22.130 -3.895 -35.141 -4.021 3.645 -2.720 H353 A1A3C 41 A1A3C H361 H4 H 0 0 N N N N N N 24.132 -5.179 -34.840 -2.918 2.164 -1.756 H361 A1A3C 42 A1A3C H381 H5 H 0 0 N N N N N N 27.036 -8.157 -31.376 1.892 -1.366 -0.205 H381 A1A3C 43 A1A3C H291 H6 H 0 0 N N N N N N 28.840 -3.638 -39.936 -6.757 -1.159 3.121 H291 A1A3C 44 A1A3C H292 H7 H 0 0 N N N N N N 28.737 -3.355 -38.165 -7.070 -0.798 1.406 H292 A1A3C 45 A1A3C H293 H8 H 0 0 N N N N N N 28.592 -5.023 -38.818 -5.563 -1.617 1.883 H293 A1A3C 46 A1A3C H041 H9 H 0 0 N N N N N N 31.738 -8.340 -28.089 6.890 -0.916 -0.941 H041 A1A3C 47 A1A3C H042 H10 H 0 0 N N N N N N 30.853 -6.784 -28.229 6.860 -1.236 0.810 H042 A1A3C 48 A1A3C H052 H11 H 0 0 N N N N N N 31.036 -8.676 -25.791 7.958 1.282 -0.521 H052 A1A3C 49 A1A3C H051 H12 H 0 0 N N N N N N 31.414 -6.922 -25.866 7.928 0.962 1.230 H051 A1A3C 50 A1A3C H062 H13 H 0 0 N N N N N N 29.350 -6.720 -24.826 9.350 -1.040 0.889 H062 A1A3C 51 A1A3C H061 H14 H 0 0 N N N N N N 28.737 -6.841 -26.510 9.380 -0.720 -0.862 H061 A1A3C 52 A1A3C H081 H15 H 0 0 N N N N N N 26.408 -9.286 -25.397 11.881 -0.654 -0.458 H081 A1A3C 53 A1A3C H083 H16 H 0 0 N N N N N N 26.597 -7.519 -25.136 12.521 0.640 0.583 H083 A1A3C 54 A1A3C H082 H17 H 0 0 N N N N N N 26.891 -8.223 -26.762 11.653 -0.735 1.305 H082 A1A3C 55 A1A3C H093 H18 H 0 0 N N N N N N 27.973 -9.715 -23.575 9.579 2.216 -0.810 H093 A1A3C 56 A1A3C H092 H19 H 0 0 N N N N N N 29.615 -8.987 -23.583 11.346 2.313 -0.616 H092 A1A3C 57 A1A3C H091 H20 H 0 0 N N N N N N 28.174 -7.948 -23.319 10.637 1.117 -1.727 H091 A1A3C 58 A1A3C H111 H21 H 0 0 N N N N N N 30.361 -5.851 -29.888 4.075 2.263 0.496 H111 A1A3C 59 A1A3C H121 H22 H 0 0 N N N N N N 30.125 -4.168 -31.801 1.988 3.506 0.687 H121 A1A3C 60 A1A3C H161 H23 H 0 0 N N N N N N 25.070 -7.063 -34.785 -0.380 -1.999 -0.584 H161 A1A3C 61 A1A3C H172 H24 H 0 0 N N N N N N 24.946 -6.997 -31.712 -2.981 -0.378 -1.076 H172 A1A3C 62 A1A3C H171 H25 H 0 0 N N N N N N 23.579 -7.119 -32.870 -2.231 -1.635 -2.151 H171 A1A3C 63 A1A3C H181 H26 H 0 0 N N N N N N 25.137 -9.388 -31.739 -4.009 -2.313 0.022 H181 A1A3C 64 A1A3C H213 H27 H 0 0 N N N N N N 22.213 -8.366 -36.119 -3.013 -6.405 -1.365 H213 A1A3C 65 A1A3C H211 H28 H 0 0 N N N N N N 22.890 -7.384 -34.776 -1.526 -6.316 -0.390 H211 A1A3C 66 A1A3C H212 H29 H 0 0 N N N N N N 23.978 -8.392 -35.789 -3.026 -6.951 0.330 H212 A1A3C 67 A1A3C H232 H30 H 0 0 N N N N N N 25.861 -9.352 -34.638 -1.538 -2.608 1.488 H232 A1A3C 68 A1A3C H231 H31 H 0 0 N N N N N N 26.956 -8.961 -33.269 -2.493 -1.063 1.487 H231 A1A3C 69 A1A3C H261 H32 H 0 0 N N N N N N 27.947 -4.439 -36.768 -3.051 0.366 2.136 H261 A1A3C 70 A1A3C H323 H33 H 0 0 N N N N N N 23.571 -2.353 -40.474 -8.635 2.586 0.618 H323 A1A3C 71 A1A3C H322 H34 H 0 0 N N N N N N 23.587 -2.029 -38.707 -7.263 2.767 1.736 H322 A1A3C 72 A1A3C H321 H35 H 0 0 N N N N N N 25.135 -2.192 -39.605 -7.207 3.528 0.128 H321 A1A3C 73 A1A3C H031 H36 H 0 0 N N N N N N 29.428 -9.345 -27.794 5.570 1.231 0.334 H031 A1A3C 74 A1A3C H201 H38 H 0 0 N N N N N N 22.034 -10.087 -34.598 -3.510 -4.745 0.865 H201 A1A3C 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A3C C32 O31 SING N N 1 A1A3C O31 C30 SING N N 2 A1A3C O28 C29 SING N N 3 A1A3C O28 C27 SING N N 4 A1A3C C30 C27 DOUB Y N 5 A1A3C C30 C33 SING Y N 6 A1A3C C27 C26 SING Y N 7 A1A3C O34 C33 SING N N 8 A1A3C O34 C35 SING N N 9 A1A3C C33 C36 DOUB Y N 10 A1A3C C26 C25 DOUB Y N 11 A1A3C C36 C25 SING Y N 12 A1A3C C25 C24 SING N N 13 A1A3C C21 N20 SING N N 14 A1A3C N20 C19 SING N N 15 A1A3C C24 N37 DOUB Y N 16 A1A3C C24 N15 SING Y N 17 A1A3C C16 C23 SING N N 18 A1A3C C16 N15 SING N N 19 A1A3C C16 C17 SING N N 20 A1A3C N37 C13 SING Y N 21 A1A3C C23 C18 SING N N 22 A1A3C N15 C14 SING Y N 23 A1A3C C19 C18 SING N N 24 A1A3C C19 O22 DOUB N N 25 A1A3C C18 C17 SING N N 26 A1A3C C13 C14 DOUB Y N 27 A1A3C C13 C12 SING Y N 28 A1A3C C14 C38 SING Y N 29 A1A3C C12 C11 DOUB Y N 30 A1A3C C38 C10 DOUB Y N 31 A1A3C C11 C10 SING Y N 32 A1A3C C10 C02 SING N N 33 A1A3C O01 C02 DOUB N N 34 A1A3C C02 N03 SING N N 35 A1A3C N03 C04 SING N N 36 A1A3C C04 C05 SING N N 37 A1A3C C05 C06 SING N N 38 A1A3C C06 N07 SING N N 39 A1A3C C08 N07 SING N N 40 A1A3C N07 C09 SING N N 41 A1A3C C35 H351 SING N N 42 A1A3C C35 H352 SING N N 43 A1A3C C35 H353 SING N N 44 A1A3C C36 H361 SING N N 45 A1A3C C38 H381 SING N N 46 A1A3C C29 H291 SING N N 47 A1A3C C29 H292 SING N N 48 A1A3C C29 H293 SING N N 49 A1A3C C04 H041 SING N N 50 A1A3C C04 H042 SING N N 51 A1A3C C05 H052 SING N N 52 A1A3C C05 H051 SING N N 53 A1A3C C06 H062 SING N N 54 A1A3C C06 H061 SING N N 55 A1A3C C08 H081 SING N N 56 A1A3C C08 H083 SING N N 57 A1A3C C08 H082 SING N N 58 A1A3C C09 H093 SING N N 59 A1A3C C09 H092 SING N N 60 A1A3C C09 H091 SING N N 61 A1A3C C11 H111 SING N N 62 A1A3C C12 H121 SING N N 63 A1A3C C16 H161 SING N N 64 A1A3C C17 H172 SING N N 65 A1A3C C17 H171 SING N N 66 A1A3C C18 H181 SING N N 67 A1A3C C21 H213 SING N N 68 A1A3C C21 H211 SING N N 69 A1A3C C21 H212 SING N N 70 A1A3C C23 H232 SING N N 71 A1A3C C23 H231 SING N N 72 A1A3C C26 H261 SING N N 73 A1A3C C32 H323 SING N N 74 A1A3C C32 H322 SING N N 75 A1A3C C32 H321 SING N N 76 A1A3C N03 H031 SING N N 77 A1A3C N20 H201 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A3C SMILES ACDLabs 14.52 "CN(C)CCCNC(=O)c1ccc2nc(c3cc(OC)c(OC)c(OC)c3)n(c2c1)C1CC(C1)C(=O)NC" A1A3C InChI InChI 1.06 "InChI=1S/C28H37N5O5/c1-29-27(34)19-12-20(13-19)33-22-14-17(28(35)30-10-7-11-32(2)3)8-9-21(22)31-26(33)18-15-23(36-4)25(38-6)24(16-18)37-5/h8-9,14-16,19-20H,7,10-13H2,1-6H3,(H,29,34)(H,30,35)/t19-,20-" A1A3C InChIKey InChI 1.06 COJOXDOWRKQNIY-MXVIHJGJSA-N A1A3C SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H]1C[C@H](C1)n2c3cc(ccc3nc2c4cc(OC)c(OC)c(OC)c4)C(=O)NCCCN(C)C" A1A3C SMILES CACTVS 3.385 "CNC(=O)[CH]1C[CH](C1)n2c3cc(ccc3nc2c4cc(OC)c(OC)c(OC)c4)C(=O)NCCCN(C)C" A1A3C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1CC(C1)n2c3cc(ccc3nc2c4cc(c(c(c4)OC)OC)OC)C(=O)NCCCN(C)C" A1A3C SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1CC(C1)n2c3cc(ccc3nc2c4cc(c(c(c4)OC)OC)OC)C(=O)NCCCN(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A3C "SYSTEMATIC NAME" ACDLabs 14.52 "N-[3-(dimethylamino)propyl]-1-[(1r,3r)-3-(methylcarbamoyl)cyclobutyl]-2-(3,4,5-trimethoxyphenyl)-1H-1,3-benzimidazole-6-carboxamide" A1A3C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-(dimethylamino)propyl]-3-[3-(methylcarbamoyl)cyclobutyl]-2-(3,4,5-trimethoxyphenyl)benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A3C "Create component" 2024-08-23 RCSB A1A3C "Initial release" 2024-11-27 RCSB #