data_A1A3G # _chem_comp.id A1A3G _chem_comp.name "(2R)-3-(4-{[(S)-{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}phenyl)-2-{[(2R)-pyrrolidine-2-carbonyl]amino}propanoic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N7 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-26 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 591.510 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A3G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DBJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A3G C02 C1 C 0 1 Y N N N N N -7.284 -64.304 24.626 -9.603 1.431 0.991 C02 A1A3G 1 A1A3G C04 C2 C 0 1 Y N N N N N -6.829 -65.155 26.739 -9.985 0.140 -0.884 C04 A1A3G 2 A1A3G C06 C3 C 0 1 Y N N N N N -9.056 -64.818 26.116 -7.828 0.208 -0.091 C06 A1A3G 3 A1A3G C07 C4 C 0 1 Y N N N N N -8.673 -64.348 24.882 -8.246 1.069 0.938 C07 A1A3G 4 A1A3G C09 C5 C 0 1 Y N N N N N -10.856 -64.310 25.011 -6.116 0.749 1.188 C09 A1A3G 5 A1A3G C11 C6 C 0 1 N N S N N N -11.130 -65.236 27.382 -5.600 -0.808 -0.729 C11 A1A3G 6 A1A3G C13 C7 C 0 1 N N S N N N -11.495 -64.924 29.585 -3.440 -1.545 -0.977 C13 A1A3G 7 A1A3G C14 C8 C 0 1 N N N N N N -11.884 -63.927 30.718 -2.031 -1.473 -0.385 C14 A1A3G 8 A1A3G C18 C9 C 0 1 Y N N N N N -8.470 -61.875 28.745 1.984 1.583 -1.269 C18 A1A3G 9 A1A3G C19 C10 C 0 1 Y N N N N N -9.588 -61.460 28.033 2.335 2.517 -0.306 C19 A1A3G 10 A1A3G C20 C11 C 0 1 Y N N N N N -9.453 -60.636 26.914 3.663 2.849 -0.119 C20 A1A3G 11 A1A3G C21 C12 C 0 1 Y N N N N N -8.189 -60.225 26.494 4.641 2.252 -0.892 C21 A1A3G 12 A1A3G C22 C13 C 0 1 N N N N N N -8.065 -59.321 25.249 6.089 2.616 -0.686 C22 A1A3G 13 A1A3G C23 C14 C 0 1 N N R N N N -7.759 -57.837 25.575 6.706 1.684 0.360 C23 A1A3G 14 A1A3G C25 C15 C 0 1 N N N N N N -9.919 -57.028 26.713 6.728 -0.728 0.700 C25 A1A3G 15 A1A3G C26 C16 C 0 1 N N S N N N -10.772 -56.609 27.938 6.744 -2.139 0.169 C26 A1A3G 16 A1A3G C28 C17 C 0 1 N N N N N N -11.033 -56.351 30.245 6.582 -4.398 0.777 C28 A1A3G 17 A1A3G C29 C18 C 0 1 N N N N N N -10.737 -55.079 29.894 5.217 -4.055 0.141 C29 A1A3G 18 A1A3G C30 C19 C 0 1 N N N N N N -10.504 -55.099 28.360 5.324 -2.569 -0.259 C30 A1A3G 19 A1A3G C32 C20 C 0 1 N N N N N N -6.257 -57.587 25.647 8.116 2.125 0.656 C32 A1A3G 20 A1A3G C35 C21 C 0 1 Y N N N N N -7.064 -60.644 27.194 4.294 1.320 -1.852 C35 A1A3G 21 A1A3G C36 C22 C 0 1 Y N N N N N -7.202 -61.468 28.316 2.968 0.980 -2.039 C36 A1A3G 22 A1A3G C39 C23 C 0 1 N N S N N N -12.681 -65.667 28.834 -4.195 -2.775 -0.425 C39 A1A3G 23 A1A3G C41 C24 C 0 1 N N N N N N -12.452 -65.345 27.353 -5.649 -2.279 -0.259 C41 A1A3G 24 A1A3G N01 N1 N 0 1 N N N N N N -6.792 -63.830 23.371 -10.072 2.276 1.981 N01 A1A3G 25 A1A3G N03 N2 N 0 1 Y N N N N N -6.423 -64.706 25.559 -10.424 0.947 0.065 N03 A1A3G 26 A1A3G N05 N3 N 0 1 Y N N N N N -8.117 -65.210 27.009 -8.724 -0.230 -0.969 N05 A1A3G 27 A1A3G N08 N4 N 0 1 Y N N N N N -9.816 -64.042 24.223 -7.152 1.361 1.683 N08 A1A3G 28 A1A3G N10 N5 N 0 1 Y N N N N N -10.400 -64.787 26.162 -6.482 0.021 0.095 N10 A1A3G 29 A1A3G N24 N6 N 0 1 N N N N N N -8.473 -57.448 26.828 6.720 0.313 -0.156 N24 A1A3G 30 A1A3G N27 N7 N 0 1 N N N N N N -10.476 -57.297 29.027 7.115 -3.093 1.246 N27 A1A3G 31 A1A3G O12 O1 O 0 1 N N N N N N -10.876 -64.278 28.649 -4.223 -0.409 -0.551 O12 A1A3G 32 A1A3G O15 O2 O 0 1 N N N N N N -10.694 -63.704 31.461 -1.337 -0.355 -0.942 O15 A1A3G 33 A1A3G O17 O3 O 0 1 N N N N N N -8.611 -62.724 29.887 0.678 1.255 -1.455 O17 A1A3G 34 A1A3G O31 O4 O 0 1 N N N N N N -10.429 -57.031 25.639 6.724 -0.530 1.896 O31 A1A3G 35 A1A3G O33 O5 O 0 1 N N N N N N -5.539 -57.859 24.661 9.039 1.371 0.456 O33 A1A3G 36 A1A3G O34 O6 O 0 1 N N N N N N -5.732 -57.108 26.692 8.347 3.355 1.141 O34 A1A3G 37 A1A3G O37 O7 O 0 1 N N N N N N -8.912 -62.054 32.390 1.054 -1.144 -0.766 O37 A1A3G 38 A1A3G O38 O8 O 0 1 N N N N N N -10.573 -61.176 30.783 0.231 0.451 1.008 O38 A1A3G 39 A1A3G O40 O9 O 0 1 N N N N N N -13.959 -65.287 29.264 -3.651 -3.172 0.835 O40 A1A3G 40 A1A3G P16 P1 P 0 1 N N N N N N -9.709 -62.382 31.138 0.176 0.026 -0.544 P16 A1A3G 41 A1A3G H041 H1 H 0 0 N N N N N N -6.106 -65.474 27.476 -10.686 -0.231 -1.616 H041 A1A3G 42 A1A3G H091 H2 H 0 0 N N N N N N -11.895 -64.164 24.756 -5.114 0.807 1.587 H091 A1A3G 43 A1A3G H111 H3 H 0 0 N N N N N N -10.702 -66.210 27.663 -5.885 -0.736 -1.779 H111 A1A3G 44 A1A3G H131 H4 H 0 0 N N N N N N -10.853 -65.699 30.029 -3.391 -1.587 -2.065 H131 A1A3G 45 A1A3G H141 H5 H 0 0 N N N N N N -12.662 -64.363 31.362 -2.097 -1.357 0.697 H141 A1A3G 46 A1A3G H142 H6 H 0 0 N N N N N N -12.250 -62.983 30.289 -1.490 -2.389 -0.620 H142 A1A3G 47 A1A3G H191 H7 H 0 0 N N N N N N -10.571 -61.778 28.348 1.571 2.985 0.298 H191 A1A3G 48 A1A3G H201 H8 H 0 0 N N N N N N -10.331 -60.316 26.372 3.937 3.577 0.631 H201 A1A3G 49 A1A3G H222 H9 H 0 0 N N N N N N -9.014 -59.365 24.694 6.627 2.511 -1.628 H222 A1A3G 50 A1A3G H221 H10 H 0 0 N N N N N N -7.253 -59.711 24.618 6.159 3.647 -0.340 H221 A1A3G 51 A1A3G H231 H11 H 0 0 N N N N N N -8.160 -57.229 24.751 6.114 1.722 1.274 H231 A1A3G 52 A1A3G H261 H12 H 0 0 N N N N N N -11.835 -56.704 27.671 7.435 -2.221 -0.669 H261 A1A3G 53 A1A3G H282 H13 H 0 0 N N N N N N -12.120 -56.473 30.357 6.449 -5.079 1.617 H282 A1A3G 54 A1A3G H281 H14 H 0 0 N N N N N N -10.535 -56.612 31.190 7.249 -4.837 0.035 H281 A1A3G 55 A1A3G H292 H15 H 0 0 N N N N N N -11.573 -54.409 30.144 5.044 -4.672 -0.740 H292 A1A3G 56 A1A3G H291 H16 H 0 0 N N N N N N -9.828 -54.741 30.414 4.416 -4.197 0.866 H291 A1A3G 57 A1A3G H302 H17 H 0 0 N N N N N N -11.206 -54.422 27.851 4.575 -1.980 0.270 H302 A1A3G 58 A1A3G H301 H18 H 0 0 N N N N N N -9.472 -54.805 28.119 5.203 -2.457 -1.336 H301 A1A3G 59 A1A3G H351 H19 H 0 0 N N N N N N -6.081 -60.333 26.871 5.060 0.855 -2.455 H351 A1A3G 60 A1A3G H361 H20 H 0 0 N N N N N N -6.324 -61.792 28.855 2.697 0.249 -2.786 H361 A1A3G 61 A1A3G H391 H21 H 0 0 N N N N N N -12.540 -66.748 28.978 -4.152 -3.600 -1.136 H391 A1A3G 62 A1A3G H411 H22 H 0 0 N N N N N N -12.787 -66.160 26.694 -5.954 -2.335 0.786 H411 A1A3G 63 A1A3G H412 H23 H 0 0 N N N N N N -12.940 -64.406 27.052 -6.325 -2.859 -0.887 H412 A1A3G 64 A1A3G H012 H24 H 0 0 N N N N N N -5.793 -63.869 23.368 -9.462 2.627 2.649 H012 A1A3G 65 A1A3G H011 H25 H 0 0 N N N N N N -7.150 -64.404 22.634 -11.011 2.519 2.007 H011 A1A3G 66 A1A3G H241 H26 H 0 0 N N N N N N -8.009 -57.465 27.714 6.724 0.155 -1.113 H241 A1A3G 67 A1A3G H271 H27 H 0 0 N N N N N N -10.937 -58.184 29.025 8.116 -3.133 1.364 H271 A1A3G 68 A1A3G H2 H29 H 0 1 N N N N N N -4.795 -57.018 26.564 9.268 3.592 1.315 H2 A1A3G 69 A1A3G H3 H30 H 0 1 N N N N N N -10.427 -60.484 31.417 -0.322 1.213 1.227 H3 A1A3G 70 A1A3G H401 H31 H 0 0 N N N N N N -14.615 -65.769 28.774 -4.088 -3.940 1.227 H401 A1A3G 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A3G C02 N01 SING N N 1 A1A3G N03 C02 DOUB Y N 2 A1A3G C04 N03 SING Y N 3 A1A3G N05 C04 DOUB Y N 4 A1A3G C06 N05 SING Y N 5 A1A3G C07 C06 DOUB Y N 6 A1A3G N08 C07 SING Y N 7 A1A3G C09 N08 DOUB Y N 8 A1A3G N10 C09 SING Y N 9 A1A3G C11 N10 SING N N 10 A1A3G O12 C11 SING N N 11 A1A3G C13 O12 SING N N 12 A1A3G O15 C14 SING N N 13 A1A3G P16 O15 SING N N 14 A1A3G C18 O17 SING N N 15 A1A3G C19 C18 DOUB Y N 16 A1A3G C20 C19 SING Y N 17 A1A3G C21 C20 DOUB Y N 18 A1A3G C23 C22 SING N N 19 A1A3G C25 N24 SING N N 20 A1A3G N27 C26 SING N N 21 A1A3G C28 N27 SING N N 22 A1A3G C29 C28 SING N N 23 A1A3G C30 C29 SING N N 24 A1A3G C26 C25 SING N N 25 A1A3G O31 C25 DOUB N N 26 A1A3G N24 C23 SING N N 27 A1A3G C32 C23 SING N N 28 A1A3G O33 C32 DOUB N N 29 A1A3G O34 C32 SING N N 30 A1A3G C22 C21 SING N N 31 A1A3G C35 C21 SING Y N 32 A1A3G C36 C35 DOUB Y N 33 A1A3G O17 P16 SING N N 34 A1A3G O37 P16 DOUB N N 35 A1A3G O38 P16 SING N N 36 A1A3G C14 C13 SING N N 37 A1A3G C39 C13 SING N N 38 A1A3G O40 C39 SING N N 39 A1A3G C41 C39 SING N N 40 A1A3G C02 C07 SING Y N 41 A1A3G C06 N10 SING Y N 42 A1A3G C11 C41 SING N N 43 A1A3G C18 C36 SING Y N 44 A1A3G C26 C30 SING N N 45 A1A3G C04 H041 SING N N 46 A1A3G C09 H091 SING N N 47 A1A3G C11 H111 SING N N 48 A1A3G C13 H131 SING N N 49 A1A3G C14 H141 SING N N 50 A1A3G C14 H142 SING N N 51 A1A3G C19 H191 SING N N 52 A1A3G C20 H201 SING N N 53 A1A3G C22 H222 SING N N 54 A1A3G C22 H221 SING N N 55 A1A3G C23 H231 SING N N 56 A1A3G C26 H261 SING N N 57 A1A3G C28 H282 SING N N 58 A1A3G C28 H281 SING N N 59 A1A3G C29 H292 SING N N 60 A1A3G C29 H291 SING N N 61 A1A3G C30 H302 SING N N 62 A1A3G C30 H301 SING N N 63 A1A3G C35 H351 SING N N 64 A1A3G C36 H361 SING N N 65 A1A3G C39 H391 SING N N 66 A1A3G C41 H411 SING N N 67 A1A3G C41 H412 SING N N 68 A1A3G N01 H012 SING N N 69 A1A3G N01 H011 SING N N 70 A1A3G N24 H241 SING N N 71 A1A3G N27 H271 SING N N 72 A1A3G O34 H2 SING N N 73 A1A3G O38 H3 SING N N 74 A1A3G O40 H401 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A3G SMILES ACDLabs 14.52 "O=C(O)C(NC(=O)C1CCCN1)Cc1ccc(cc1)OP(=O)(O)OCC1OC(CC1O)n1cnc2c(N)ncnc21" A1A3G InChI InChI 1.06 "InChI=1S/C24H30N7O9P/c25-21-20-22(28-11-27-21)31(12-29-20)19-9-17(32)18(39-19)10-38-41(36,37)40-14-5-3-13(4-6-14)8-16(24(34)35)30-23(33)15-2-1-7-26-15/h3-6,11-12,15-19,26,32H,1-2,7-10H2,(H,30,33)(H,34,35)(H,36,37)(H2,25,27,28)" A1A3G InChIKey InChI 1.06 FVPBNOZKHKXLRZ-UHFFFAOYSA-N A1A3G SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](O)[C@H](CO[P](O)(=O)Oc4ccc(C[C@@H](NC(=O)[C@@H]5CCCN5)C(O)=O)cc4)O3" A1A3G SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)Oc4ccc(C[CH](NC(=O)[CH]5CCCN5)C(O)=O)cc4)O3" A1A3G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@H](C(=O)O)NC(=O)[C@@H]2CCCN2)OP(=O)(O)OC[C@H]3[C@H](C[C@H](O3)n4cnc5c4ncnc5N)O" A1A3G SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)NC(=O)C2CCCN2)OP(=O)(O)OCC3C(CC(O3)n4cnc5c4ncnc5N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A3G "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-3-(4-{[(S)-{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}phenyl)-2-{[(2R)-pyrrolidine-2-carbonyl]amino}propanoic acid (non-preferred name)" A1A3G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-3-[4-[[(2~{S},3~{S},5~{S})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxyphenyl]-2-[[(2~{S})-pyrrolidin-2-yl]carbonylamino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A3G "Create component" 2024-08-26 RCSB A1A3G "Initial release" 2025-05-07 RCSB #