data_A1A3H # _chem_comp.id A1A3H _chem_comp.name "(2R)-2-amino-3-(4-{[(R)-{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}phenyl)propanoic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-26 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.395 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A3H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DBJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A3H C21 C1 C 0 1 Y N N N N N -43.997 -57.444 24.512 5.958 1.258 -0.284 C21 A1A3H 1 A1A3H C22 C2 C 0 1 N N N N N N -44.224 -57.204 26.008 7.431 1.457 -0.032 C22 A1A3H 2 A1A3H C23 C3 C 0 1 N N S N N N -42.903 -57.059 26.764 8.026 0.176 0.554 C23 A1A3H 3 A1A3H C25 C4 C 0 1 N N N N N N -42.204 -55.733 26.468 9.519 0.333 0.691 C25 A1A3H 4 A1A3H C28 C5 C 0 1 Y N N N N N -44.170 -56.402 23.614 5.527 0.767 -1.502 C28 A1A3H 5 A1A3H C29 C6 C 0 1 Y N N N N N -43.964 -56.612 22.259 4.178 0.578 -1.733 C29 A1A3H 6 A1A3H C32 C7 C 0 1 N N S N N N -39.607 -61.484 19.243 -3.320 -2.940 -0.397 C32 A1A3H 7 A1A3H C02 C8 C 0 1 Y N N N N N -44.416 -62.451 23.188 -8.184 2.033 0.096 C02 A1A3H 8 A1A3H C04 C9 C 0 1 Y N N N N N -44.279 -61.934 20.941 -8.417 0.455 1.764 C04 A1A3H 9 A1A3H C06 C10 C 0 1 Y N N N N N -42.293 -62.075 22.150 -6.460 0.412 0.558 C06 A1A3H 10 A1A3H C07 C11 C 0 1 Y N N N N N -43.013 -62.380 23.291 -6.918 1.501 -0.202 C07 A1A3H 11 A1A3H C09 C12 C 0 1 Y N N N N N -40.895 -62.344 23.768 -4.952 0.971 -0.950 C09 A1A3H 12 A1A3H C11 C13 C 0 1 N N R N N N -39.880 -61.779 21.575 -4.338 -0.967 0.545 C11 A1A3H 13 A1A3H C13 C14 C 0 1 N N S N N N -40.580 -60.637 19.552 -2.465 -1.680 -0.681 C13 A1A3H 14 A1A3H C14 C15 C 0 1 N N N N N N -40.478 -59.296 18.824 -0.993 -1.956 -0.369 C14 A1A3H 15 A1A3H C18 C16 C 0 1 Y N N N N N -43.578 -57.860 21.797 3.256 0.880 -0.741 C18 A1A3H 16 A1A3H C19 C17 C 0 1 Y N N N N N -43.408 -58.901 22.697 3.692 1.372 0.481 C19 A1A3H 17 A1A3H C20 C18 C 0 1 Y N N N N N -43.615 -58.695 24.054 5.042 1.559 0.707 C20 A1A3H 18 A1A3H C34 C19 C 0 1 N N N N N N -39.568 -62.484 20.486 -4.712 -2.299 -0.140 C34 A1A3H 19 A1A3H N01 N1 N 0 1 N N N N N N -45.215 -62.772 24.361 -8.687 3.106 -0.619 N01 A1A3H 20 A1A3H N03 N2 N 0 1 Y N N N N N -45.000 -62.227 22.015 -8.889 1.479 1.077 N03 A1A3H 21 A1A3H N05 N3 N 0 1 Y N N N N N -42.961 -61.860 21.004 -7.235 -0.073 1.524 N05 A1A3H 22 A1A3H N08 N4 N 0 1 Y N N N N N -42.106 -62.540 24.270 -5.950 1.792 -1.104 N08 A1A3H 23 A1A3H N10 N5 N 0 1 Y N N N N N -40.987 -62.060 22.479 -5.218 0.102 0.067 N10 A1A3H 24 A1A3H N24 N6 N 0 1 N N N N N N -43.144 -57.173 28.191 7.438 -0.077 1.876 N24 A1A3H 25 A1A3H O12 O1 O 0 1 N N N N N N -40.415 -60.429 21.065 -2.980 -0.670 0.200 O12 A1A3H 26 A1A3H O15 O2 O 0 1 N N N N N N -40.734 -58.278 19.761 -0.205 -0.825 -0.746 O15 A1A3H 27 A1A3H O17 O3 O 0 1 N N N N N N -43.371 -58.075 20.422 1.929 0.695 -0.966 O17 A1A3H 28 A1A3H O26 O4 O 0 1 N N N N N N -42.251 -54.796 27.308 10.002 0.604 1.765 O26 A1A3H 29 A1A3H O27 O5 O 0 1 N N N N N N -41.582 -55.572 25.384 10.312 0.172 -0.380 O27 A1A3H 30 A1A3H O30 O6 O 0 1 N N N N N N -41.846 -55.979 20.166 1.735 -1.043 0.854 O30 A1A3H 31 A1A3H O31 O7 O 0 1 N N N N N N -42.461 -57.246 18.156 2.084 -1.874 -1.504 O31 A1A3H 32 A1A3H O33 O8 O 0 1 N N N N N N -38.375 -60.828 19.112 -2.850 -3.632 0.761 O33 A1A3H 33 A1A3H P16 P1 P 0 1 N N N N N N -42.107 -57.364 19.619 1.393 -0.768 -0.560 P16 A1A3H 34 A1A3H H221 H1 H 0 0 N N N N N N -44.782 -58.055 26.425 7.931 1.694 -0.971 H221 A1A3H 35 A1A3H H222 H2 H 0 0 N N N N N N -44.811 -56.283 26.136 7.571 2.279 0.671 H222 A1A3H 36 A1A3H H231 H3 H 0 0 N N N N N N -42.237 -57.874 26.446 7.808 -0.662 -0.107 H231 A1A3H 37 A1A3H H281 H4 H 0 0 N N N N N N -44.465 -55.426 23.970 6.244 0.532 -2.274 H281 A1A3H 38 A1A3H H291 H5 H 0 0 N N N N N N -44.105 -55.800 21.561 3.841 0.195 -2.685 H291 A1A3H 39 A1A3H H321 H6 H 0 0 N N N N N N -39.838 -62.067 18.339 -3.346 -3.601 -1.263 H321 A1A3H 40 A1A3H H041 H7 H 0 0 N N N N N N -44.777 -61.753 20.000 -9.023 0.035 2.553 H041 A1A3H 41 A1A3H H091 H8 H 0 0 N N N N N N -39.973 -62.407 24.327 -4.047 0.978 -1.538 H091 A1A3H 42 A1A3H H111 H9 H 0 0 N N N N N N -38.979 -61.576 22.173 -4.433 -1.068 1.626 H111 A1A3H 43 A1A3H H131 H10 H 0 0 N N N N N N -41.574 -61.069 19.362 -2.580 -1.370 -1.720 H131 A1A3H 44 A1A3H H141 H11 H 0 0 N N N N N N -41.220 -59.253 18.013 -0.876 -2.141 0.699 H141 A1A3H 45 A1A3H H142 H12 H 0 0 N N N N N N -39.468 -59.174 18.405 -0.661 -2.832 -0.927 H142 A1A3H 46 A1A3H H191 H13 H 0 0 N N N N N N -43.113 -59.877 22.340 2.977 1.607 1.255 H191 A1A3H 47 A1A3H H201 H14 H 0 0 N N N N N N -43.479 -59.508 24.752 5.382 1.938 1.659 H201 A1A3H 48 A1A3H H341 H15 H 0 0 N N N N N N -40.298 -63.294 20.340 -5.235 -2.119 -1.079 H341 A1A3H 49 A1A3H H342 H16 H 0 0 N N N N N N -38.561 -62.913 20.592 -5.309 -2.923 0.524 H342 A1A3H 50 A1A3H H012 H17 H 0 0 N N N N N N -46.183 -62.784 24.112 -8.164 3.499 -1.336 H012 A1A3H 51 A1A3H H011 H18 H 0 0 N N N N N N -44.950 -63.671 24.709 -9.562 3.465 -0.404 H011 A1A3H 52 A1A3H H242 H19 H 0 0 N N N N N N -42.279 -57.078 28.684 7.767 -0.952 2.257 H242 A1A3H 53 A1A3H H241 H20 H 0 0 N N N N N N -43.774 -56.453 28.481 7.626 0.686 2.508 H241 A1A3H 54 A1A3H H2 H22 H 0 1 N N N N N N -41.211 -54.698 25.358 11.263 0.282 -0.243 H2 A1A3H 55 A1A3H H3 H23 H 0 1 N N N N N N -42.443 -56.332 17.898 1.902 -1.755 -2.446 H3 A1A3H 56 A1A3H H331 H24 H 0 0 N N N N N N -37.701 -61.460 18.891 -3.356 -4.427 0.977 H331 A1A3H 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A3H C02 N01 SING N N 1 A1A3H N03 C02 DOUB Y N 2 A1A3H C04 N03 SING Y N 3 A1A3H N05 C04 DOUB Y N 4 A1A3H C06 N05 SING Y N 5 A1A3H C07 C06 DOUB Y N 6 A1A3H N08 C07 SING Y N 7 A1A3H C09 N08 DOUB Y N 8 A1A3H N10 C09 SING Y N 9 A1A3H C11 N10 SING N N 10 A1A3H O12 C11 SING N N 11 A1A3H C13 O12 SING N N 12 A1A3H O15 C14 SING N N 13 A1A3H P16 O15 SING N N 14 A1A3H C18 O17 SING N N 15 A1A3H C19 C18 DOUB Y N 16 A1A3H C20 C19 SING Y N 17 A1A3H C21 C20 DOUB Y N 18 A1A3H C23 C22 SING N N 19 A1A3H N24 C23 SING N N 20 A1A3H C25 C23 SING N N 21 A1A3H O26 C25 DOUB N N 22 A1A3H O27 C25 SING N N 23 A1A3H C22 C21 SING N N 24 A1A3H C28 C21 SING Y N 25 A1A3H C29 C28 DOUB Y N 26 A1A3H O17 P16 SING N N 27 A1A3H O30 P16 DOUB N N 28 A1A3H O31 P16 SING N N 29 A1A3H C14 C13 SING N N 30 A1A3H C32 C13 SING N N 31 A1A3H O33 C32 SING N N 32 A1A3H C34 C32 SING N N 33 A1A3H C02 C07 SING Y N 34 A1A3H C06 N10 SING Y N 35 A1A3H C11 C34 SING N N 36 A1A3H C18 C29 SING Y N 37 A1A3H C22 H221 SING N N 38 A1A3H C22 H222 SING N N 39 A1A3H C23 H231 SING N N 40 A1A3H C28 H281 SING N N 41 A1A3H C29 H291 SING N N 42 A1A3H C32 H321 SING N N 43 A1A3H C04 H041 SING N N 44 A1A3H C09 H091 SING N N 45 A1A3H C11 H111 SING N N 46 A1A3H C13 H131 SING N N 47 A1A3H C14 H141 SING N N 48 A1A3H C14 H142 SING N N 49 A1A3H C19 H191 SING N N 50 A1A3H C20 H201 SING N N 51 A1A3H C34 H341 SING N N 52 A1A3H C34 H342 SING N N 53 A1A3H N01 H012 SING N N 54 A1A3H N01 H011 SING N N 55 A1A3H N24 H242 SING N N 56 A1A3H N24 H241 SING N N 57 A1A3H O27 H2 SING N N 58 A1A3H O31 H3 SING N N 59 A1A3H O33 H331 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A3H SMILES ACDLabs 14.52 "O=C(O)C(N)Cc1ccc(cc1)OP(=O)(O)OCC1OC(CC1O)n1cnc2c(N)ncnc21" A1A3H InChI InChI 1.06 "InChI=1S/C19H23N6O8P/c20-12(19(27)28)5-10-1-3-11(4-2-10)33-34(29,30)31-7-14-13(26)6-15(32-14)25-9-24-16-17(21)22-8-23-18(16)25/h1-4,8-9,12-15,26H,5-7,20H2,(H,27,28)(H,29,30)(H2,21,22,23)" A1A3H InChIKey InChI 1.06 FVTPNOGUOYZKIO-UHFFFAOYSA-N A1A3H SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccc(O[P](O)(=O)OC[C@@H]2O[C@H](C[C@@H]2O)n3cnc4c(N)ncnc34)cc1)C(O)=O" A1A3H SMILES CACTVS 3.385 "N[CH](Cc1ccc(O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)n3cnc4c(N)ncnc34)cc1)C(O)=O" A1A3H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@@H](C(=O)O)N)OP(=O)(O)OC[C@H]2[C@H](C[C@@H](O2)n3cnc4c3ncnc4N)O" A1A3H SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)N)OP(=O)(O)OCC2C(CC(O2)n3cnc4c3ncnc4N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A3H "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-2-amino-3-(4-{[(R)-{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}phenyl)propanoic acid (non-preferred name)" A1A3H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-3-[4-[[(2~{S},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxyphenyl]-2-azanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A3H "Create component" 2024-08-26 RCSB A1A3H "Initial release" 2025-05-07 RCSB #