data_A1A4K # _chem_comp.id A1A4K _chem_comp.name "N-[(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H36 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-03 _chem_comp.pdbx_modified_date 2025-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.762 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A4K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9COX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A4K C01 C1 C 0 1 N N N N N N -20.337 -22.649 -6.339 7.304 -1.536 0.706 C01 A1A4K 1 A1A4K C02 C2 C 0 1 N N N N N N -20.218 -21.359 -5.502 6.264 -0.560 0.153 C02 A1A4K 2 A1A4K C03 C3 C 0 1 N N N N N N -20.263 -20.060 -6.334 4.982 -0.657 0.982 C03 A1A4K 3 A1A4K C05 C4 C 0 1 N N N N N N -21.625 -18.651 -4.672 2.771 0.366 1.029 C05 A1A4K 4 A1A4K C06 C5 C 0 1 N N S N N N -22.850 -17.786 -4.308 1.746 1.328 0.484 C06 A1A4K 5 A1A4K C08 C6 C 0 1 N N N N N N -24.430 -16.688 -6.601 -0.160 -0.755 0.185 C08 A1A4K 6 A1A4K C09 C7 C 0 1 N N S N N N -23.823 -17.449 -7.789 -1.582 -1.256 0.450 C09 A1A4K 7 A1A4K C11 C8 C 0 1 N N N N N N -24.469 -19.776 -8.301 -3.391 0.350 0.738 C11 A1A4K 8 A1A4K C13 C9 C 0 1 N N N N N N -24.123 -18.658 -4.230 2.048 2.738 0.995 C13 A1A4K 9 A1A4K C14 C10 C 0 1 Y N N N N N -24.927 -18.246 -2.986 1.114 3.721 0.338 C14 A1A4K 10 A1A4K C15 C11 C 0 1 Y N N N N N -25.017 -17.793 -0.609 -0.902 5.012 0.381 C15 A1A4K 11 A1A4K C16 C12 C 0 1 Y N N N N N -26.373 -17.466 -0.718 -0.600 5.525 -0.867 C16 A1A4K 12 A1A4K C17 C13 C 0 1 Y N N N N N -27.000 -17.528 -1.967 0.555 5.130 -1.516 C17 A1A4K 13 A1A4K C18 C14 C 0 1 Y N N N N N -26.280 -17.914 -3.102 1.412 4.228 -0.913 C18 A1A4K 14 A1A4K C19 C15 C 0 1 Y N N N N N -24.292 -18.181 -1.741 -0.045 4.111 0.983 C19 A1A4K 15 A1A4K C20 C16 C 0 1 N N N N N N -23.218 -16.501 -8.849 -1.779 -2.613 -0.227 C20 A1A4K 16 A1A4K C21 C17 C 0 1 Y N N N N N -22.238 -17.301 -9.729 -3.124 -3.175 0.155 C21 A1A4K 17 A1A4K C22 C18 C 0 1 Y N N N N N -22.763 -18.019 -10.809 -3.243 -3.987 1.240 C22 A1A4K 18 A1A4K C23 C19 C 0 1 Y N N N N N -20.857 -17.347 -9.456 -4.264 -2.857 -0.604 C23 A1A4K 19 A1A4K C24 C20 C 0 1 Y N N N N N -20.019 -18.103 -10.282 -5.520 -3.395 -0.229 C24 A1A4K 20 A1A4K C25 C21 C 0 1 Y N N N N N -20.548 -18.812 -11.363 -5.602 -4.235 0.895 C25 A1A4K 21 A1A4K C26 C22 C 0 1 Y N N N N N -21.918 -18.772 -11.627 -4.479 -4.512 1.612 C26 A1A4K 22 A1A4K C28 C23 C 0 1 Y N N N N N -25.286 -20.926 -8.880 -4.440 1.232 0.184 C28 A1A4K 23 A1A4K C29 C24 C 0 1 Y N N N N N -19.672 -22.576 -7.728 8.567 -1.441 -0.111 C29 A1A4K 24 A1A4K C30 C25 C 0 1 Y N N N N N -20.481 -22.447 -8.864 9.564 -0.545 0.241 C30 A1A4K 25 A1A4K C31 C26 C 0 1 Y N N N N N -19.857 -22.385 -10.115 10.709 -0.491 -0.540 C31 A1A4K 26 A1A4K C32 C27 C 0 1 Y N N N N N -18.462 -22.459 -10.193 10.817 -1.327 -1.635 C32 A1A4K 27 A1A4K C34 C28 C 0 1 Y N N N N N -18.278 -22.649 -7.863 8.747 -2.249 -1.217 C34 A1A4K 28 A1A4K C35 C29 C 0 1 Y N N N N N -26.043 -21.713 -8.018 -4.567 1.404 -1.194 C35 A1A4K 29 A1A4K C37 C30 C 0 1 Y N N N N N -26.725 -23.066 -9.797 -6.347 2.840 -0.912 C37 A1A4K 30 A1A4K C38 C31 C 0 1 Y N N N N N -25.965 -22.319 -10.701 -6.291 2.718 0.465 C38 A1A4K 31 A1A4K C39 C32 C 0 1 Y N N N N N -25.220 -21.231 -10.240 -5.327 1.904 1.034 C39 A1A4K 32 A1A4K C40 C33 C 0 1 Y N N N N N -20.294 -16.644 -8.376 -4.182 -2.017 -1.727 C40 A1A4K 33 A1A4K C41 C34 C 0 1 Y N N N N N -18.913 -16.700 -8.129 -5.307 -1.731 -2.438 C41 A1A4K 34 A1A4K C42 C35 C 0 1 Y N N N N N -18.083 -17.459 -8.961 -6.542 -2.260 -2.069 C42 A1A4K 35 A1A4K C43 C36 C 0 1 Y N N N N N -18.642 -18.158 -10.036 -6.660 -3.077 -0.987 C43 A1A4K 36 A1A4K N04 N1 N 0 1 N N N N N N -21.445 -19.236 -6.014 3.986 0.278 0.453 N04 A1A4K 37 A1A4K N10 N2 N 0 1 N N N N N N -24.793 -18.358 -8.427 -2.547 -0.295 -0.090 N10 A1A4K 38 A1A4K N33 N3 N 0 1 Y N N N N N -17.723 -22.588 -9.083 9.847 -2.167 -1.940 N33 A1A4K 39 A1A4K N36 N4 N 0 1 Y N N N N N -26.740 -22.742 -8.499 -5.502 2.190 -1.688 N36 A1A4K 40 A1A4K O12 O1 O 0 1 N N N N N N -20.814 -18.839 -3.812 2.502 -0.328 1.987 O12 A1A4K 41 A1A4K O27 O2 O 0 1 N N N N N N -23.482 -20.070 -7.709 -3.290 0.208 1.941 O27 A1A4K 42 A1A4K S07 S1 S 0 1 N N N N N N -23.034 -16.394 -5.478 0.093 0.826 1.037 S07 A1A4K 43 A1A4K H1 H1 H 0 1 N N N N N N -21.405 -22.868 -6.481 7.523 -1.285 1.744 H1 A1A4K 44 A1A4K H2 H2 H 0 1 N N N N N N -19.866 -23.468 -5.776 6.913 -2.552 0.653 H2 A1A4K 45 A1A4K H3 H3 H 0 1 N N N N N N -21.049 -21.337 -4.782 6.655 0.456 0.206 H3 A1A4K 46 A1A4K H4 H4 H 0 1 N N N N N N -19.262 -21.387 -4.958 6.045 -0.812 -0.885 H4 A1A4K 47 A1A4K H5 H5 H 0 1 N N N N N N -20.293 -20.323 -7.402 4.591 -1.673 0.929 H5 A1A4K 48 A1A4K H6 H6 H 0 1 N N N N N N -19.355 -19.474 -6.126 5.200 -0.405 2.020 H6 A1A4K 49 A1A4K H7 H7 H 0 1 N N N N N N -22.677 -17.327 -3.324 1.783 1.319 -0.605 H7 A1A4K 50 A1A4K H8 H8 H 0 1 N N N N N N -24.867 -15.735 -6.934 0.558 -1.486 0.555 H8 A1A4K 51 A1A4K H9 H9 H 0 1 N N N N N N -25.204 -17.294 -6.107 -0.018 -0.617 -0.887 H9 A1A4K 52 A1A4K H10 H10 H 0 1 N N N N N N -22.997 -18.060 -7.395 -1.735 -1.360 1.524 H10 A1A4K 53 A1A4K H11 H11 H 0 1 N N N N N N -24.733 -18.504 -5.133 1.910 2.771 2.075 H11 A1A4K 54 A1A4K H12 H12 H 0 1 N N N N N N -23.841 -19.719 -4.154 3.079 2.999 0.752 H12 A1A4K 55 A1A4K H13 H13 H 0 1 N N N N N N -24.528 -17.746 0.353 -1.807 5.317 0.885 H13 A1A4K 56 A1A4K H14 H14 H 0 1 N N N N N N -26.932 -17.168 0.157 -1.270 6.229 -1.338 H14 A1A4K 57 A1A4K H15 H15 H 0 1 N N N N N N -28.047 -17.276 -2.055 0.790 5.530 -2.491 H15 A1A4K 58 A1A4K H16 H16 H 0 1 N N N N N N -26.768 -17.955 -4.065 2.315 3.921 -1.419 H16 A1A4K 59 A1A4K H17 H17 H 0 1 N N N N N N -23.245 -18.430 -1.654 -0.280 3.711 1.959 H17 A1A4K 60 A1A4K H18 H18 H 0 1 N N N N N N -22.681 -15.682 -8.349 -1.731 -2.490 -1.309 H18 A1A4K 61 A1A4K H19 H19 H 0 1 N N N N N N -24.021 -16.085 -9.475 -0.994 -3.298 0.096 H19 A1A4K 62 A1A4K H20 H20 H 0 1 N N N N N N -23.824 -17.991 -11.010 -2.365 -4.230 1.821 H20 A1A4K 63 A1A4K H21 H21 H 0 1 N N N N N N -19.895 -19.393 -11.997 -6.553 -4.652 1.192 H21 A1A4K 64 A1A4K H22 H22 H 0 1 N N N N N N -22.324 -19.323 -12.463 -4.545 -5.158 2.475 H22 A1A4K 65 A1A4K H23 H23 H 0 1 N N N N N N -21.556 -22.397 -8.777 9.453 0.097 1.103 H23 A1A4K 66 A1A4K H24 H24 H 0 1 N N N N N N -20.448 -22.281 -11.013 11.506 0.195 -0.295 H24 A1A4K 67 A1A4K H25 H25 H 0 1 N N N N N N -17.977 -22.412 -11.157 11.705 -1.292 -2.248 H25 A1A4K 68 A1A4K H26 H26 H 0 1 N N N N N N -17.654 -22.754 -6.988 7.977 -2.953 -1.495 H26 A1A4K 69 A1A4K H27 H27 H 0 1 N N N N N N -26.066 -21.491 -6.961 -3.893 0.889 -1.863 H27 A1A4K 70 A1A4K H28 H28 H 0 1 N N N N N N -27.303 -23.908 -10.148 -7.099 3.474 -1.359 H28 A1A4K 71 A1A4K H29 H29 H 0 1 N N N N N N -25.954 -22.581 -11.749 -6.992 3.251 1.089 H29 A1A4K 72 A1A4K H30 H30 H 0 1 N N N N N N -24.613 -20.645 -10.914 -5.261 1.790 2.106 H30 A1A4K 73 A1A4K H31 H31 H 0 1 N N N N N N -20.930 -16.056 -7.731 -3.231 -1.599 -2.024 H31 A1A4K 74 A1A4K H32 H32 H 0 1 N N N N N N -18.491 -16.157 -7.296 -5.241 -1.084 -3.300 H32 A1A4K 75 A1A4K H33 H33 H 0 1 N N N N N N -17.020 -17.505 -8.775 -7.419 -2.017 -2.650 H33 A1A4K 76 A1A4K H34 H34 H 0 1 N N N N N N -18.006 -18.745 -10.682 -7.623 -3.480 -0.713 H34 A1A4K 77 A1A4K H35 H35 H 0 1 N N N N N N -22.135 -19.072 -6.719 4.201 0.833 -0.313 H35 A1A4K 78 A1A4K H36 H36 H 0 1 N N N N N N -25.607 -18.030 -8.907 -2.578 -0.124 -1.045 H36 A1A4K 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A4K C26 C25 DOUB Y N 1 A1A4K C26 C22 SING Y N 2 A1A4K C25 C24 SING Y N 3 A1A4K C22 C21 DOUB Y N 4 A1A4K C38 C39 DOUB Y N 5 A1A4K C38 C37 SING Y N 6 A1A4K C24 C43 DOUB Y N 7 A1A4K C24 C23 SING Y N 8 A1A4K C39 C28 SING Y N 9 A1A4K C32 C31 DOUB Y N 10 A1A4K C32 N33 SING Y N 11 A1A4K C31 C30 SING Y N 12 A1A4K C43 C42 SING Y N 13 A1A4K C37 N36 DOUB Y N 14 A1A4K C21 C23 SING Y N 15 A1A4K C21 C20 SING N N 16 A1A4K C23 C40 DOUB Y N 17 A1A4K N33 C34 DOUB Y N 18 A1A4K C42 C41 DOUB Y N 19 A1A4K C28 C11 SING N N 20 A1A4K C28 C35 DOUB Y N 21 A1A4K C30 C29 DOUB Y N 22 A1A4K C20 C09 SING N N 23 A1A4K N36 C35 SING Y N 24 A1A4K N10 C11 SING N N 25 A1A4K N10 C09 SING N N 26 A1A4K C40 C41 SING Y N 27 A1A4K C11 O27 DOUB N N 28 A1A4K C34 C29 SING Y N 29 A1A4K C09 C08 SING N N 30 A1A4K C29 C01 SING N N 31 A1A4K C08 S07 SING N N 32 A1A4K C01 C02 SING N N 33 A1A4K C03 N04 SING N N 34 A1A4K C03 C02 SING N N 35 A1A4K N04 C05 SING N N 36 A1A4K S07 C06 SING N N 37 A1A4K C05 C06 SING N N 38 A1A4K C05 O12 DOUB N N 39 A1A4K C06 C13 SING N N 40 A1A4K C13 C14 SING N N 41 A1A4K C18 C14 DOUB Y N 42 A1A4K C18 C17 SING Y N 43 A1A4K C14 C19 SING Y N 44 A1A4K C17 C16 DOUB Y N 45 A1A4K C19 C15 DOUB Y N 46 A1A4K C16 C15 SING Y N 47 A1A4K C01 H1 SING N N 48 A1A4K C01 H2 SING N N 49 A1A4K C02 H3 SING N N 50 A1A4K C02 H4 SING N N 51 A1A4K C03 H5 SING N N 52 A1A4K C03 H6 SING N N 53 A1A4K C06 H7 SING N N 54 A1A4K C08 H8 SING N N 55 A1A4K C08 H9 SING N N 56 A1A4K C09 H10 SING N N 57 A1A4K C13 H11 SING N N 58 A1A4K C13 H12 SING N N 59 A1A4K C15 H13 SING N N 60 A1A4K C16 H14 SING N N 61 A1A4K C17 H15 SING N N 62 A1A4K C18 H16 SING N N 63 A1A4K C19 H17 SING N N 64 A1A4K C20 H18 SING N N 65 A1A4K C20 H19 SING N N 66 A1A4K C22 H20 SING N N 67 A1A4K C25 H21 SING N N 68 A1A4K C26 H22 SING N N 69 A1A4K C30 H23 SING N N 70 A1A4K C31 H24 SING N N 71 A1A4K C32 H25 SING N N 72 A1A4K C34 H26 SING N N 73 A1A4K C35 H27 SING N N 74 A1A4K C37 H28 SING N N 75 A1A4K C38 H29 SING N N 76 A1A4K C39 H30 SING N N 77 A1A4K C40 H31 SING N N 78 A1A4K C41 H32 SING N N 79 A1A4K C42 H33 SING N N 80 A1A4K C43 H34 SING N N 81 A1A4K N04 H35 SING N N 82 A1A4K N10 H36 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A4K SMILES ACDLabs 14.52 "O=C(NC(Cc1cccc2ccccc21)CSC(Cc1ccccc1)C(=O)NCCCc1cccnc1)c1cccnc1" A1A4K InChI InChI 1.06 "InChI=1S/C36H36N4O2S/c41-35(31-17-9-20-38-25-31)40-32(23-30-16-6-15-29-14-4-5-18-33(29)30)26-43-34(22-27-10-2-1-3-11-27)36(42)39-21-8-13-28-12-7-19-37-24-28/h1-7,9-12,14-20,24-25,32,34H,8,13,21-23,26H2,(H,39,42)(H,40,41)/t32-,34-/m0/s1" A1A4K InChIKey InChI 1.06 WKMPCQFZMNPMMH-TWJUONSBSA-N A1A4K SMILES_CANONICAL CACTVS 3.385 "O=C(NCCCc1cccnc1)[C@H](Cc2ccccc2)SC[C@H](Cc3cccc4ccccc34)NC(=O)c5cccnc5" A1A4K SMILES CACTVS 3.385 "O=C(NCCCc1cccnc1)[CH](Cc2ccccc2)SC[CH](Cc3cccc4ccccc34)NC(=O)c5cccnc5" A1A4K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)NCCCc2cccnc2)SC[C@H](Cc3cccc4c3cccc4)NC(=O)c5cccnc5" A1A4K SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NCCCc2cccnc2)SCC(Cc3cccc4c3cccc4)NC(=O)c5cccnc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A4K "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" A1A4K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A4K "Create component" 2024-09-03 RCSB A1A4K "Initial release" 2025-01-08 RCSB #