data_A1A4S # _chem_comp.id A1A4S _chem_comp.name "N-[(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-05 _chem_comp.pdbx_modified_date 2025-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.739 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A4S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9COV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A4S C11 C1 C 0 1 N N N N N N -23.253 -16.670 -8.749 3.181 0.855 0.587 C11 A1A4S 1 A1A4S C13 C2 C 0 1 N N N N N N -23.358 -17.743 -4.036 -1.387 -2.799 -0.274 C13 A1A4S 2 A1A4S C14 C3 C 0 1 Y N N N N N -24.011 -19.127 -4.228 -2.657 -3.013 0.509 C14 A1A4S 3 A1A4S C15 C4 C 0 1 Y N N N N N -25.572 -20.569 -5.396 -3.792 -3.195 2.609 C15 A1A4S 4 A1A4S C16 C5 C 0 1 Y N N N N N -25.198 -21.641 -4.577 -4.986 -3.403 1.945 C16 A1A4S 5 A1A4S C17 C6 C 0 1 Y N N N N N -24.230 -21.457 -3.583 -5.015 -3.423 0.563 C17 A1A4S 6 A1A4S C18 C7 C 0 1 Y N N N N N -23.640 -20.200 -3.409 -3.850 -3.227 -0.155 C18 A1A4S 7 A1A4S C19 C8 C 0 1 Y N N N N N -24.979 -19.313 -5.222 -2.627 -2.999 1.891 C19 A1A4S 8 A1A4S C20 C9 C 0 1 N N N N N N -20.688 -14.485 -8.858 4.080 -1.968 0.581 C20 A1A4S 9 A1A4S C23 C10 C 0 1 Y N N N N N -24.263 -15.599 -9.254 3.405 2.314 0.496 C23 A1A4S 10 A1A4S C01 C11 C 0 1 N N N N N N -20.270 -22.590 -6.446 -6.704 1.308 -1.490 C01 A1A4S 11 A1A4S C02 C12 C 0 1 N N N N N N -20.044 -21.368 -5.535 -5.608 0.673 -0.632 C02 A1A4S 12 A1A4S C03 C13 C 0 1 N N N N N N -19.731 -20.074 -6.308 -4.407 0.325 -1.514 C03 A1A4S 13 A1A4S C05 C14 C 0 1 N N N N N N -21.235 -18.335 -5.196 -2.199 -0.674 -1.260 C05 A1A4S 14 A1A4S C06 C15 C 0 1 N N R N N N -22.428 -17.355 -5.202 -1.120 -1.299 -0.414 C06 A1A4S 15 A1A4S C08 C16 C 0 1 N N N N N N -21.622 -14.624 -6.496 1.661 -1.630 0.051 C08 A1A4S 16 A1A4S C09 C17 C 0 1 N N S N N N -21.043 -15.423 -7.688 3.093 -1.362 -0.419 C09 A1A4S 17 A1A4S C21 C18 C 0 1 Y N N N N N -19.947 -15.140 -10.040 5.484 -1.811 0.058 C21 A1A4S 18 A1A4S C24 C19 C 0 1 Y N N N N N -19.422 -22.585 -7.730 -7.886 1.652 -0.622 C24 A1A4S 19 A1A4S C25 C20 C 0 1 Y N N N N N -20.034 -22.336 -8.965 -8.900 0.728 -0.419 C25 A1A4S 20 A1A4S C26 C21 C 0 1 Y N N N N N -19.229 -22.340 -10.110 -9.966 1.086 0.393 C26 A1A4S 21 A1A4S C27 C22 C 0 1 Y N N N N N -17.859 -22.592 -9.987 -9.983 2.342 0.968 C27 A1A4S 22 A1A4S C29 C23 C 0 1 Y N N N N N -18.049 -22.834 -7.663 -7.971 2.890 -0.013 C29 A1A4S 23 A1A4S C30 C24 C 0 1 Y N N N N N -23.992 -14.231 -9.399 3.754 2.904 -0.720 C30 A1A4S 24 A1A4S C32 C25 C 0 1 Y N N N N N -26.161 -13.824 -10.212 3.832 4.993 0.248 C32 A1A4S 25 A1A4S C33 C26 C 0 1 Y N N N N N -26.509 -15.175 -10.104 3.485 4.487 1.487 C33 A1A4S 26 A1A4S C34 C27 C 0 1 Y N N N N N -25.541 -16.065 -9.623 3.265 3.128 1.626 C34 A1A4S 27 A1A4S C35 C28 C 0 1 Y N N N N N -19.281 -16.380 -10.102 6.347 -0.638 0.213 C35 A1A4S 28 A1A4S C36 C29 C 0 1 Y N N N N N -18.779 -16.498 -11.399 7.555 -0.954 -0.436 C36 A1A4S 29 A1A4S C38 C30 C 0 1 Y N N N N N -19.816 -14.558 -11.305 6.184 -2.724 -0.635 C38 A1A4S 30 A1A4S C39 C31 C 0 1 Y N N N N N -19.052 -17.419 -9.185 6.192 0.606 0.828 C39 A1A4S 31 A1A4S C40 C32 C 0 1 Y N N N N N -18.342 -18.566 -9.535 7.215 1.511 0.797 C40 A1A4S 32 A1A4S C41 C33 C 0 1 Y N N N N N -17.849 -18.678 -10.834 8.408 1.204 0.158 C41 A1A4S 33 A1A4S C42 C34 C 0 1 Y N N N N N -18.062 -17.646 -11.755 8.583 -0.018 -0.455 C42 A1A4S 34 A1A4S N04 N1 N 0 1 N N N N N N -20.886 -19.159 -6.367 -3.358 -0.283 -0.692 N04 A1A4S 35 A1A4S N10 N2 N 0 1 N N N N N N -21.907 -16.554 -8.112 3.314 0.083 -0.510 N10 A1A4S 36 A1A4S N28 N3 N 0 1 Y N N N N N -17.321 -22.827 -8.784 -9.000 3.195 0.753 N28 A1A4S 37 A1A4S N31 N4 N 0 1 Y N N N N N -24.936 -13.398 -9.863 3.952 4.202 -0.802 N31 A1A4S 38 A1A4S N37 N5 N 0 1 Y N N N N N -19.119 -15.393 -12.080 7.422 -2.227 -0.943 N37 A1A4S 39 A1A4S O12 O1 O 0 1 N N N N N N -20.575 -18.442 -4.204 -2.025 -0.522 -2.450 O12 A1A4S 40 A1A4S O22 O2 O 0 1 N N N N N N -23.635 -17.790 -8.931 2.883 0.352 1.653 O22 A1A4S 41 A1A4S S07 S1 S 0 1 N N N N N N -21.859 -15.631 -4.980 0.492 -1.043 -1.206 S07 A1A4S 42 A1A4S H1 H1 H 0 1 N N N N N N -22.769 -17.758 -3.107 -0.554 -3.269 0.249 H1 A1A4S 43 A1A4S H2 H2 H 0 1 N N N N N N -24.153 -16.987 -3.954 -1.491 -3.244 -1.264 H2 A1A4S 44 A1A4S H3 H3 H 0 1 N N N N N N -26.319 -20.711 -6.163 -3.769 -3.184 3.689 H3 A1A4S 45 A1A4S H4 H4 H 0 1 N N N N N N -25.656 -22.610 -4.712 -5.897 -3.556 2.506 H4 A1A4S 46 A1A4S H5 H5 H 0 1 N N N N N N -23.939 -22.283 -2.952 -5.948 -3.586 0.045 H5 A1A4S 47 A1A4S H6 H6 H 0 1 N N N N N N -22.895 -20.057 -2.640 -3.872 -3.242 -1.235 H6 A1A4S 48 A1A4S H7 H7 H 0 1 N N N N N N -25.268 -18.487 -5.855 -1.694 -2.836 2.409 H7 A1A4S 49 A1A4S H8 H8 H 0 1 N N N N N N -20.050 -13.680 -8.464 3.989 -1.453 1.538 H8 A1A4S 50 A1A4S H9 H9 H 0 1 N N N N N N -21.625 -14.056 -9.243 3.858 -3.026 0.715 H9 A1A4S 51 A1A4S H10 H10 H 0 1 N N N N N N -21.331 -22.614 -6.734 -6.320 2.216 -1.957 H10 A1A4S 52 A1A4S H11 H11 H 0 1 N N N N N N -20.024 -23.497 -5.874 -7.013 0.605 -2.264 H11 A1A4S 53 A1A4S H12 H12 H 0 1 N N N N N N -20.954 -21.206 -4.939 -5.299 1.377 0.141 H12 A1A4S 54 A1A4S H13 H13 H 0 1 N N N N N N -19.200 -21.585 -4.864 -5.992 -0.234 -0.166 H13 A1A4S 55 A1A4S H14 H14 H 0 1 N N N N N N -19.437 -20.338 -7.335 -4.716 -0.379 -2.287 H14 A1A4S 56 A1A4S H15 H15 H 0 1 N N N N N N -18.897 -19.558 -5.810 -4.023 1.232 -1.981 H15 A1A4S 57 A1A4S H16 H16 H 0 1 N N N N N N -22.965 -17.402 -6.161 -1.117 -0.837 0.573 H16 A1A4S 58 A1A4S H17 H17 H 0 1 N N N N N N -20.932 -13.800 -6.262 1.524 -2.701 0.204 H17 A1A4S 59 A1A4S H18 H18 H 0 1 N N N N N N -22.597 -14.211 -6.795 1.482 -1.104 0.988 H18 A1A4S 60 A1A4S H19 H19 H 0 1 N N N N N N -20.094 -15.856 -7.338 3.244 -1.815 -1.399 H19 A1A4S 61 A1A4S H20 H20 H 0 1 N N N N N N -21.095 -22.147 -9.032 -8.860 -0.247 -0.882 H20 A1A4S 62 A1A4S H21 H21 H 0 1 N N N N N N -19.662 -22.150 -11.081 -10.773 0.391 0.573 H21 A1A4S 63 A1A4S H22 H22 H 0 1 N N N N N N -17.232 -22.597 -10.866 -10.809 2.628 1.601 H22 A1A4S 64 A1A4S H23 H23 H 0 1 N N N N N N -17.579 -23.031 -6.711 -7.184 3.613 -0.162 H23 A1A4S 65 A1A4S H24 H24 H 0 1 N N N N N N -23.018 -13.846 -9.136 3.862 2.289 -1.602 H24 A1A4S 66 A1A4S H25 H25 H 0 1 N N N N N N -26.887 -13.115 -10.581 4.004 6.054 0.136 H25 A1A4S 67 A1A4S H26 H26 H 0 1 N N N N N N -27.494 -15.520 -10.383 3.389 5.145 2.338 H26 A1A4S 68 A1A4S H27 H27 H 0 1 N N N N N N -25.775 -17.116 -9.534 2.992 2.706 2.582 H27 A1A4S 69 A1A4S H28 H28 H 0 1 N N N N N N -20.211 -13.598 -11.604 5.824 -3.704 -0.910 H28 A1A4S 70 A1A4S H29 H29 H 0 1 N N N N N N -19.437 -17.326 -8.180 5.266 0.852 1.327 H29 A1A4S 71 A1A4S H30 H30 H 0 1 N N N N N N -18.177 -19.353 -8.814 7.094 2.473 1.273 H30 A1A4S 72 A1A4S H31 H31 H 0 1 N N N N N N -17.303 -19.561 -11.130 9.208 1.930 0.140 H31 A1A4S 73 A1A4S H32 H32 H 0 1 N N N N N N -17.667 -17.737 -12.756 9.516 -0.248 -0.949 H32 A1A4S 74 A1A4S H33 H33 H 0 1 N N N N N N -21.433 -19.098 -7.202 -3.497 -0.405 0.260 H33 A1A4S 75 A1A4S H34 H34 H 0 1 N N N N N N -21.491 -17.445 -7.928 3.556 0.484 -1.359 H34 A1A4S 76 A1A4S H35 H35 H 0 1 N N N N N N -18.883 -15.219 -13.036 8.104 -2.703 -1.441 H35 A1A4S 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A4S N37 C36 SING Y N 1 A1A4S N37 C38 SING Y N 2 A1A4S C42 C36 DOUB Y N 3 A1A4S C42 C41 SING Y N 4 A1A4S C36 C35 SING Y N 5 A1A4S C38 C21 DOUB Y N 6 A1A4S C41 C40 DOUB Y N 7 A1A4S C32 C33 DOUB Y N 8 A1A4S C32 N31 SING Y N 9 A1A4S C26 C27 DOUB Y N 10 A1A4S C26 C25 SING Y N 11 A1A4S C33 C34 SING Y N 12 A1A4S C35 C21 SING Y N 13 A1A4S C35 C39 DOUB Y N 14 A1A4S C21 C20 SING N N 15 A1A4S C27 N28 SING Y N 16 A1A4S N31 C30 DOUB Y N 17 A1A4S C34 C23 DOUB Y N 18 A1A4S C40 C39 SING Y N 19 A1A4S C30 C23 SING Y N 20 A1A4S C23 C11 SING N N 21 A1A4S C25 C24 DOUB Y N 22 A1A4S O22 C11 DOUB N N 23 A1A4S C20 C09 SING N N 24 A1A4S N28 C29 DOUB Y N 25 A1A4S C11 N10 SING N N 26 A1A4S N10 C09 SING N N 27 A1A4S C24 C29 SING Y N 28 A1A4S C24 C01 SING N N 29 A1A4S C09 C08 SING N N 30 A1A4S C08 S07 SING N N 31 A1A4S C01 C02 SING N N 32 A1A4S N04 C03 SING N N 33 A1A4S N04 C05 SING N N 34 A1A4S C03 C02 SING N N 35 A1A4S C15 C19 DOUB Y N 36 A1A4S C15 C16 SING Y N 37 A1A4S C19 C14 SING Y N 38 A1A4S C06 C05 SING N N 39 A1A4S C06 S07 SING N N 40 A1A4S C06 C13 SING N N 41 A1A4S C05 O12 DOUB N N 42 A1A4S C16 C17 DOUB Y N 43 A1A4S C14 C13 SING N N 44 A1A4S C14 C18 DOUB Y N 45 A1A4S C17 C18 SING Y N 46 A1A4S C13 H1 SING N N 47 A1A4S C13 H2 SING N N 48 A1A4S C15 H3 SING N N 49 A1A4S C16 H4 SING N N 50 A1A4S C17 H5 SING N N 51 A1A4S C18 H6 SING N N 52 A1A4S C19 H7 SING N N 53 A1A4S C20 H8 SING N N 54 A1A4S C20 H9 SING N N 55 A1A4S C01 H10 SING N N 56 A1A4S C01 H11 SING N N 57 A1A4S C02 H12 SING N N 58 A1A4S C02 H13 SING N N 59 A1A4S C03 H14 SING N N 60 A1A4S C03 H15 SING N N 61 A1A4S C06 H16 SING N N 62 A1A4S C08 H17 SING N N 63 A1A4S C08 H18 SING N N 64 A1A4S C09 H19 SING N N 65 A1A4S C25 H20 SING N N 66 A1A4S C26 H21 SING N N 67 A1A4S C27 H22 SING N N 68 A1A4S C29 H23 SING N N 69 A1A4S C30 H24 SING N N 70 A1A4S C32 H25 SING N N 71 A1A4S C33 H26 SING N N 72 A1A4S C34 H27 SING N N 73 A1A4S C38 H28 SING N N 74 A1A4S C39 H29 SING N N 75 A1A4S C40 H30 SING N N 76 A1A4S C41 H31 SING N N 77 A1A4S C42 H32 SING N N 78 A1A4S N04 H33 SING N N 79 A1A4S N10 H34 SING N N 80 A1A4S N37 H35 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A4S SMILES ACDLabs 14.52 "O=C(NCCCc1cccnc1)C(Cc1ccccc1)SCC(NC(=O)c1cccnc1)Cc1c[NH]c2ccccc21" A1A4S InChI InChI 1.06 "InChI=1S/C34H35N5O2S/c40-33(27-13-8-17-36-22-27)39-29(20-28-23-38-31-15-5-4-14-30(28)31)24-42-32(19-25-9-2-1-3-10-25)34(41)37-18-7-12-26-11-6-16-35-21-26/h1-6,8-11,13-17,21-23,29,32,38H,7,12,18-20,24H2,(H,37,41)(H,39,40)/t29-,32+/m0/s1" A1A4S InChIKey InChI 1.06 ABZLMAOSAJFABX-BHDXBOSCSA-N A1A4S SMILES_CANONICAL CACTVS 3.385 "O=C(NCCCc1cccnc1)[C@@H](Cc2ccccc2)SC[C@H](Cc3c[nH]c4ccccc34)NC(=O)c5cccnc5" A1A4S SMILES CACTVS 3.385 "O=C(NCCCc1cccnc1)[CH](Cc2ccccc2)SC[CH](Cc3c[nH]c4ccccc34)NC(=O)c5cccnc5" A1A4S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H](C(=O)NCCCc2cccnc2)SC[C@H](Cc3c[nH]c4c3cccc4)NC(=O)c5cccnc5" A1A4S SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NCCCc2cccnc2)SCC(Cc3c[nH]c4c3cccc4)NC(=O)c5cccnc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A4S "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" A1A4S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A4S "Create component" 2024-09-05 RCSB A1A4S "Initial release" 2025-01-08 RCSB #