data_A1A4V # _chem_comp.id A1A4V _chem_comp.name "N-[(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H36 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-05 _chem_comp.pdbx_modified_date 2025-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.762 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A4V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9COW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A4V C12 C1 C 0 1 Y N N N N N -19.578 -27.025 -6.822 -8.361 2.178 -0.494 C12 A1A4V 1 A1A4V C14 C2 C 0 1 N N N N N N -13.330 -32.080 -3.911 -1.058 -2.514 0.184 C14 A1A4V 2 A1A4V C15 C3 C 0 1 Y N N N N N -12.911 -30.602 -3.860 -2.354 -2.828 0.887 C15 A1A4V 3 A1A4V C16 C4 C 0 1 Y N N N N N -13.085 -29.801 -2.706 -3.444 -3.269 0.162 C16 A1A4V 4 A1A4V C19 C5 C 0 1 Y N N N N N -12.031 -28.629 -5.000 -3.638 -2.967 2.903 C19 A1A4V 5 A1A4V C20 C6 C 0 1 Y N N N N N -12.388 -29.976 -4.998 -2.450 -2.679 2.258 C20 A1A4V 6 A1A4V C22 C7 C 0 1 N N N N N N -16.798 -34.629 -5.443 1.778 -0.901 0.506 C22 A1A4V 7 A1A4V C23 C8 C 0 1 N N S N N N -16.509 -34.545 -7.005 3.185 -0.484 0.072 C23 A1A4V 8 A1A4V C10 C9 C 0 1 Y N N N N N -19.468 -27.015 -9.127 -10.338 1.459 0.446 C10 A1A4V 9 A1A4V C13 C10 C 0 1 N N R N N N -14.628 -32.395 -4.782 -0.990 -1.015 -0.114 C13 A1A4V 10 A1A4V C17 C11 C 0 1 Y N N N N N -12.727 -28.443 -2.700 -4.633 -3.557 0.807 C17 A1A4V 11 A1A4V C18 C12 C 0 1 Y N N N N N -12.196 -27.849 -3.853 -4.730 -3.404 2.177 C18 A1A4V 12 A1A4V C02 C13 C 0 1 N N N N N N -15.817 -31.428 -4.558 -2.093 -0.643 -1.072 C02 A1A4V 13 A1A4V C04 C14 C 0 1 N N N N N N -17.498 -29.746 -5.563 -4.397 -0.001 -1.535 C04 A1A4V 14 A1A4V C05 C15 C 0 1 N N N N N N -17.178 -28.530 -4.667 -5.685 0.266 -0.752 C05 A1A4V 15 A1A4V C06 C16 C 0 1 N N N N N N -17.502 -27.164 -5.301 -6.804 0.644 -1.725 C06 A1A4V 16 A1A4V C07 C17 C 0 1 Y N N N N N -18.173 -27.133 -6.674 -8.072 0.906 -0.953 C07 A1A4V 17 A1A4V C08 C18 C 0 1 Y N N N N N -17.435 -27.166 -7.867 -8.962 -0.124 -0.695 C08 A1A4V 18 A1A4V C09 C19 C 0 1 Y N N N N N -18.073 -27.117 -9.102 -10.116 0.164 0.018 C09 A1A4V 19 A1A4V C24 C20 C 0 1 N N N N N N -17.856 -34.517 -7.841 4.185 -0.838 1.174 C24 A1A4V 20 A1A4V C25 C21 C 0 1 Y N N N N N -18.450 -33.128 -8.129 5.582 -0.522 0.706 C25 A1A4V 21 A1A4V C26 C22 C 0 1 Y N N N N N -17.989 -32.360 -9.262 6.273 -1.428 -0.116 C26 A1A4V 22 A1A4V C27 C23 C 0 1 Y N N N N N -16.990 -32.822 -10.156 5.688 -2.640 -0.520 C27 A1A4V 23 A1A4V C28 C24 C 0 1 Y N N N N N -16.546 -32.106 -11.235 6.387 -3.493 -1.317 C28 A1A4V 24 A1A4V C29 C25 C 0 1 Y N N N N N -17.096 -30.815 -11.510 7.678 -3.184 -1.740 C29 A1A4V 25 A1A4V C30 C26 C 0 1 Y N N N N N -18.061 -30.332 -10.673 8.277 -2.019 -1.369 C30 A1A4V 26 A1A4V C31 C27 C 0 1 Y N N N N N -18.530 -31.071 -9.548 7.586 -1.113 -0.547 C31 A1A4V 27 A1A4V C32 C28 C 0 1 Y N N N N N -19.533 -30.560 -8.685 8.172 0.099 -0.143 C32 A1A4V 28 A1A4V C33 C29 C 0 1 Y N N N N N -19.974 -31.274 -7.610 7.472 0.952 0.653 C33 A1A4V 29 A1A4V C34 C30 C 0 1 Y N N N N N -19.426 -32.577 -7.325 6.179 0.645 1.073 C34 A1A4V 30 A1A4V C36 C31 C 0 1 N N N N N N -14.438 -35.568 -8.171 2.863 1.814 0.812 C36 A1A4V 31 A1A4V C38 C32 C 0 1 Y N N N N N -13.566 -36.779 -8.494 2.795 3.266 0.540 C38 A1A4V 32 A1A4V C39 C33 C 0 1 Y N N N N N -13.791 -38.047 -7.939 3.092 3.764 -0.729 C39 A1A4V 33 A1A4V C41 C34 C 0 1 Y N N N N N -12.004 -39.048 -9.039 2.692 5.926 -0.039 C41 A1A4V 34 A1A4V C42 C35 C 0 1 Y N N N N N -11.682 -37.832 -9.656 2.377 5.511 1.243 C42 A1A4V 35 A1A4V C43 C36 C 0 1 Y N N N N N -12.466 -36.702 -9.380 2.425 4.163 1.549 C43 A1A4V 36 A1A4V N03 N1 N 0 1 N N N N N N -16.373 -30.673 -5.661 -3.326 -0.362 -0.604 N03 A1A4V 37 A1A4V N11 N2 N 0 1 Y N N N N N -20.213 -26.970 -8.000 -9.465 2.414 0.186 N11 A1A4V 38 A1A4V N35 N3 N 0 1 N N N N N N -15.609 -35.672 -7.379 3.214 0.960 -0.169 N35 A1A4V 39 A1A4V N40 N4 N 0 1 Y N N N N N -13.052 -39.154 -8.185 3.032 5.057 -0.972 N40 A1A4V 40 A1A4V O01 O1 O 0 1 N N N N N N -16.260 -31.319 -3.429 -1.871 -0.596 -2.263 O01 A1A4V 41 A1A4V O37 O2 O 0 1 N N N N N N -14.139 -34.469 -8.595 2.602 1.391 1.921 O37 A1A4V 42 A1A4V S21 S1 S 0 1 N N N N N N -15.335 -34.114 -4.406 0.616 -0.618 -0.858 S21 A1A4V 43 A1A4V H1 H1 H 0 1 N N N N N N -20.177 -26.984 -5.924 -7.672 2.986 -0.691 H1 A1A4V 44 A1A4V H2 H2 H 0 1 N N N N N N -13.524 -32.413 -2.881 -0.221 -2.795 0.823 H2 A1A4V 45 A1A4V H3 H3 H 0 1 N N N N N N -12.492 -32.656 -4.331 -1.007 -3.073 -0.750 H3 A1A4V 46 A1A4V H4 H4 H 0 1 N N N N N N -13.501 -30.243 -1.813 -3.368 -3.389 -0.909 H4 A1A4V 47 A1A4V H5 H5 H 0 1 N N N N N N -11.623 -28.184 -5.896 -3.713 -2.852 3.974 H5 A1A4V 48 A1A4V H6 H6 H 0 1 N N N N N N -12.257 -30.554 -5.901 -1.596 -2.339 2.826 H6 A1A4V 49 A1A4V H7 H7 H 0 1 N N N N N N -17.646 -33.969 -5.207 1.778 -1.958 0.770 H7 A1A4V 50 A1A4V H8 H8 H 0 1 N N N N N N -17.060 -35.667 -5.190 1.475 -0.310 1.370 H8 A1A4V 51 A1A4V H9 H9 H 0 1 N N N N N N -15.983 -33.597 -7.193 3.453 -1.011 -0.844 H9 A1A4V 52 A1A4V H10 H10 H 0 1 N N N N N N -19.969 -26.971 -10.083 -11.234 1.692 1.002 H10 A1A4V 53 A1A4V H11 H11 H 0 1 N N N N N N -14.354 -32.406 -5.847 -1.110 -0.454 0.813 H11 A1A4V 54 A1A4V H12 H12 H 0 1 N N N N N N -12.861 -27.855 -1.804 -5.485 -3.902 0.240 H12 A1A4V 55 A1A4V H13 H13 H 0 1 N N N N N N -11.919 -26.805 -3.855 -5.659 -3.629 2.681 H13 A1A4V 56 A1A4V H14 H14 H 0 1 N N N N N N -17.749 -29.386 -6.572 -4.561 -0.819 -2.236 H14 A1A4V 57 A1A4V H15 H15 H 0 1 N N N N N N -18.361 -30.280 -5.139 -4.114 0.897 -2.085 H15 A1A4V 58 A1A4V H16 H16 H 0 1 N N N N N N -17.761 -28.625 -3.739 -5.968 -0.632 -0.203 H16 A1A4V 59 A1A4V H17 H17 H 0 1 N N N N N N -16.104 -28.552 -4.429 -5.520 1.085 -0.052 H17 A1A4V 60 A1A4V H18 H18 H 0 1 N N N N N N -16.553 -26.616 -5.392 -6.520 1.541 -2.274 H18 A1A4V 61 A1A4V H19 H19 H 0 1 N N N N N N -18.167 -26.633 -4.604 -6.968 -0.175 -2.425 H19 A1A4V 62 A1A4V H20 H20 H 0 1 N N N N N N -16.358 -27.230 -7.826 -8.763 -1.127 -1.042 H20 A1A4V 63 A1A4V H21 H21 H 0 1 N N N N N N -17.505 -27.157 -10.020 -10.834 -0.613 0.234 H21 A1A4V 64 A1A4V H22 H22 H 0 1 N N N N N N -18.608 -35.094 -7.284 3.961 -0.255 2.068 H22 A1A4V 65 A1A4V H23 H23 H 0 1 N N N N N N -17.661 -35.005 -8.807 4.110 -1.900 1.405 H23 A1A4V 66 A1A4V H24 H24 H 0 1 N N N N N N -16.555 -33.794 -9.975 4.688 -2.893 -0.199 H24 A1A4V 67 A1A4V H25 H25 H 0 1 N N N N N N -15.781 -32.516 -11.878 5.935 -4.424 -1.626 H25 A1A4V 68 A1A4V H26 H26 H 0 1 N N N N N N -16.757 -30.237 -12.357 8.212 -3.878 -2.372 H26 A1A4V 69 A1A4V H27 H27 H 0 1 N N N N N N -18.483 -29.358 -10.870 9.279 -1.793 -1.704 H27 A1A4V 70 A1A4V H28 H28 H 0 1 N N N N N N -19.956 -29.586 -8.883 9.171 0.352 -0.463 H28 A1A4V 71 A1A4V H29 H29 H 0 1 N N N N N N -20.738 -30.861 -6.968 7.924 1.883 0.962 H29 A1A4V 72 A1A4V H30 H30 H 0 1 N N N N N N -19.785 -33.130 -6.469 5.643 1.342 1.701 H30 A1A4V 73 A1A4V H31 H31 H 0 1 N N N N N N -14.623 -38.149 -7.258 3.374 3.084 -1.519 H31 A1A4V 74 A1A4V H32 H32 H 0 1 N N N N N N -11.404 -39.921 -9.248 2.655 6.978 -0.281 H32 A1A4V 75 A1A4V H33 H33 H 0 1 N N N N N N -10.843 -37.766 -10.333 2.096 6.233 1.996 H33 A1A4V 76 A1A4V H34 H34 H 0 1 N N N N N N -12.226 -35.760 -9.851 2.184 3.812 2.542 H34 A1A4V 77 A1A4V H35 H35 H 0 1 N N N N N N -15.954 -30.796 -6.561 -3.503 -0.400 0.349 H35 A1A4V 78 A1A4V H36 H36 H 0 1 N N N N N N -15.852 -36.581 -7.042 3.486 1.302 -1.036 H36 A1A4V 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A4V C29 C28 DOUB Y N 1 A1A4V C29 C30 SING Y N 2 A1A4V C28 C27 SING Y N 3 A1A4V C30 C31 DOUB Y N 4 A1A4V C27 C26 DOUB Y N 5 A1A4V C42 C43 DOUB Y N 6 A1A4V C42 C41 SING Y N 7 A1A4V C31 C26 SING Y N 8 A1A4V C31 C32 SING Y N 9 A1A4V C43 C38 SING Y N 10 A1A4V C26 C25 SING Y N 11 A1A4V C10 C09 DOUB Y N 12 A1A4V C10 N11 SING Y N 13 A1A4V C09 C08 SING Y N 14 A1A4V C41 N40 DOUB Y N 15 A1A4V C32 C33 DOUB Y N 16 A1A4V O37 C36 DOUB N N 17 A1A4V C38 C36 SING N N 18 A1A4V C38 C39 DOUB Y N 19 A1A4V N40 C39 SING Y N 20 A1A4V C36 N35 SING N N 21 A1A4V C25 C24 SING N N 22 A1A4V C25 C34 DOUB Y N 23 A1A4V N11 C12 DOUB Y N 24 A1A4V C08 C07 DOUB Y N 25 A1A4V C24 C23 SING N N 26 A1A4V C33 C34 SING Y N 27 A1A4V N35 C23 SING N N 28 A1A4V C23 C22 SING N N 29 A1A4V C12 C07 SING Y N 30 A1A4V C07 C06 SING N N 31 A1A4V N03 C04 SING N N 32 A1A4V N03 C02 SING N N 33 A1A4V C04 C05 SING N N 34 A1A4V C22 S21 SING N N 35 A1A4V C06 C05 SING N N 36 A1A4V C19 C20 DOUB Y N 37 A1A4V C19 C18 SING Y N 38 A1A4V C20 C15 SING Y N 39 A1A4V C13 C02 SING N N 40 A1A4V C13 S21 SING N N 41 A1A4V C13 C14 SING N N 42 A1A4V C02 O01 DOUB N N 43 A1A4V C14 C15 SING N N 44 A1A4V C15 C16 DOUB Y N 45 A1A4V C18 C17 DOUB Y N 46 A1A4V C16 C17 SING Y N 47 A1A4V C12 H1 SING N N 48 A1A4V C14 H2 SING N N 49 A1A4V C14 H3 SING N N 50 A1A4V C16 H4 SING N N 51 A1A4V C19 H5 SING N N 52 A1A4V C20 H6 SING N N 53 A1A4V C22 H7 SING N N 54 A1A4V C22 H8 SING N N 55 A1A4V C23 H9 SING N N 56 A1A4V C10 H10 SING N N 57 A1A4V C13 H11 SING N N 58 A1A4V C17 H12 SING N N 59 A1A4V C18 H13 SING N N 60 A1A4V C04 H14 SING N N 61 A1A4V C04 H15 SING N N 62 A1A4V C05 H16 SING N N 63 A1A4V C05 H17 SING N N 64 A1A4V C06 H18 SING N N 65 A1A4V C06 H19 SING N N 66 A1A4V C08 H20 SING N N 67 A1A4V C09 H21 SING N N 68 A1A4V C24 H22 SING N N 69 A1A4V C24 H23 SING N N 70 A1A4V C27 H24 SING N N 71 A1A4V C28 H25 SING N N 72 A1A4V C29 H26 SING N N 73 A1A4V C30 H27 SING N N 74 A1A4V C32 H28 SING N N 75 A1A4V C33 H29 SING N N 76 A1A4V C34 H30 SING N N 77 A1A4V C39 H31 SING N N 78 A1A4V C41 H32 SING N N 79 A1A4V C42 H33 SING N N 80 A1A4V C43 H34 SING N N 81 A1A4V N03 H35 SING N N 82 A1A4V N35 H36 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A4V SMILES ACDLabs 14.52 "O=C(NC(Cc1cccc2ccccc21)CSC(Cc1ccccc1)C(=O)NCCCc1cccnc1)c1cccnc1" A1A4V InChI InChI 1.06 "InChI=1S/C36H36N4O2S/c41-35(31-17-9-20-38-25-31)40-32(23-30-16-6-15-29-14-4-5-18-33(29)30)26-43-34(22-27-10-2-1-3-11-27)36(42)39-21-8-13-28-12-7-19-37-24-28/h1-7,9-12,14-20,24-25,32,34H,8,13,21-23,26H2,(H,39,42)(H,40,41)/t32-,34+/m0/s1" A1A4V InChIKey InChI 1.06 WKMPCQFZMNPMMH-UZNNEEJFSA-N A1A4V SMILES_CANONICAL CACTVS 3.385 "O=C(NCCCc1cccnc1)[C@@H](Cc2ccccc2)SC[C@H](Cc3cccc4ccccc34)NC(=O)c5cccnc5" A1A4V SMILES CACTVS 3.385 "O=C(NCCCc1cccnc1)[CH](Cc2ccccc2)SC[CH](Cc3cccc4ccccc34)NC(=O)c5cccnc5" A1A4V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H](C(=O)NCCCc2cccnc2)SC[C@H](Cc3cccc4c3cccc4)NC(=O)c5cccnc5" A1A4V SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NCCCc2cccnc2)SCC(Cc3cccc4c3cccc4)NC(=O)c5cccnc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A4V "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide" A1A4V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-naphthalen-1-yl-3-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A4V "Create component" 2024-09-05 RCSB A1A4V "Initial release" 2025-01-08 RCSB #