data_A1A55 # _chem_comp.id A1A55 _chem_comp.name "N-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}-N'-ethylurea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms AVI-4206 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-10 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A55 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CY0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A55 N1 N1 N 0 1 N N N N N N -10.100 9.942 -33.812 6.403 0.294 0.120 N1 A1A55 1 A1A55 N3 N2 N 0 1 N N N N N N -10.065 17.989 -29.453 -2.633 -0.493 -0.207 N3 A1A55 2 A1A55 C4 C1 C 0 1 Y N N N N N -10.741 12.760 -31.547 2.910 -0.377 -0.526 C4 A1A55 3 A1A55 C5 C2 C 0 1 Y N N N N N -9.996 13.953 -31.396 1.734 0.346 -0.322 C5 A1A55 4 A1A55 C6 C3 C 0 1 Y N N N N N -10.422 15.019 -30.581 0.501 -0.322 -0.368 C6 A1A55 5 A1A55 C7 C4 C 0 1 Y N N N N N -9.406 16.024 -30.677 -0.529 0.698 -0.118 C7 A1A55 6 A1A55 C8 C5 C 0 1 Y N N N N N -9.178 17.333 -30.248 -1.926 0.684 -0.035 C8 A1A55 7 A1A55 C10 C6 C 0 1 N N N N N N -11.412 20.029 -27.536 -4.853 -2.532 0.974 C10 A1A55 8 A1A55 C13 C7 C 0 1 N N N N N N -10.327 21.621 -30.176 -6.292 -0.157 -0.645 C13 A1A55 9 A1A55 C15 C8 C 0 1 Y N N N N N -7.142 17.331 -31.343 -1.887 2.952 0.377 C15 A1A55 10 A1A55 C17 C9 C 0 1 Y N N N N N -11.635 14.909 -29.895 0.459 -1.693 -0.616 C17 A1A55 11 A1A55 C1 C10 C 0 1 N N N N N N -10.807 10.628 -32.882 5.232 -0.362 -0.000 C1 A1A55 12 A1A55 C11 C11 C 0 1 N N N N N N -8.938 19.620 -27.303 -4.155 -0.543 2.336 C11 A1A55 13 A1A55 C12 C12 C 0 1 N N N N N N -9.764 21.575 -28.739 -6.210 -0.408 0.879 C12 A1A55 14 A1A55 C14 C13 C 0 1 N N N N N N -10.286 20.160 -30.599 -4.849 -0.012 -1.076 C14 A1A55 15 A1A55 C16 C14 C 0 1 Y N N N N N -8.401 15.497 -31.523 0.146 1.916 0.063 C16 A1A55 16 A1A55 C18 C15 C 0 1 Y N N N N N -12.386 13.742 -30.046 1.630 -2.392 -0.816 C18 A1A55 17 A1A55 C19 C16 C 0 1 Y N N N N N -11.954 12.690 -30.878 2.851 -1.739 -0.772 C19 A1A55 18 A1A55 C2 C17 C 0 1 N N N N N N -10.527 8.655 -34.399 7.581 -0.400 0.646 C2 A1A55 19 A1A55 C3 C18 C 0 1 N N N N N N -9.392 8.018 -35.226 8.769 0.564 0.678 C3 A1A55 20 A1A55 C9 C19 C 0 1 N N N N N N -10.037 20.145 -28.218 -4.792 -1.004 1.023 C9 A1A55 21 A1A55 N2 N3 N 0 1 N N N N N N -10.217 11.790 -32.430 4.149 0.275 -0.489 N2 A1A55 22 A1A55 N4 N4 N 0 1 N N N N N N -10.070 19.394 -29.475 -4.032 -0.489 -0.121 N4 A1A55 23 A1A55 N5 N5 N 0 1 Y N N N N N -8.041 17.988 -30.578 -2.559 1.829 0.213 N5 A1A55 24 A1A55 N6 N6 N 0 1 Y N N N N N -7.254 16.104 -31.886 -0.574 3.010 0.307 N6 A1A55 25 A1A55 N7 N7 N 0 1 Y N N N N N -8.781 14.267 -31.939 1.494 1.686 -0.062 N7 A1A55 26 A1A55 O1 O1 O 0 1 N N N N N N -11.864 10.213 -32.399 5.152 -1.529 0.333 O1 A1A55 27 A1A55 O2 O2 O 0 1 N N N N N N -10.407 19.724 -31.741 -4.483 0.465 -2.129 O2 A1A55 28 A1A55 H1 H1 H 0 1 N N N N N N -9.233 10.332 -34.121 6.467 1.225 -0.146 H1 A1A55 29 A1A55 H8 H2 H 0 1 N N N N N N -10.980 17.686 -29.718 -2.161 -1.321 -0.388 H8 A1A55 30 A1A55 H10 H3 H 0 1 N N N N N N -11.401 20.589 -26.589 -5.277 -2.848 0.020 H10 A1A55 31 A1A55 H11 H4 H 0 1 N N N N N N -12.186 20.444 -28.198 -3.847 -2.939 1.077 H11 A1A55 32 A1A55 H9 H5 H 0 1 N N N N N N -11.632 18.971 -27.333 -5.478 -2.898 1.788 H9 A1A55 33 A1A55 H18 H6 H 0 1 N N N N N N -9.696 22.241 -30.830 -6.756 -1.005 -1.147 H18 A1A55 34 A1A55 H17 H7 H 0 1 N N N N N N -11.357 22.008 -30.186 -6.848 0.758 -0.851 H17 A1A55 35 A1A55 H19 H8 H 0 1 N N N N N N -6.219 17.855 -31.544 -2.436 3.860 0.576 H19 A1A55 36 A1A55 H21 H9 H 0 1 N N N N N N -11.984 15.711 -29.261 -0.490 -2.207 -0.651 H21 A1A55 37 A1A55 H14 H10 H 0 1 N N N N N N -8.932 20.198 -26.367 -4.769 -0.874 3.174 H14 A1A55 38 A1A55 H13 H11 H 0 1 N N N N N N -9.124 18.559 -27.078 -3.157 -0.970 2.425 H13 A1A55 39 A1A55 H12 H12 H 0 1 N N N N N N -7.964 19.723 -27.804 -4.087 0.545 2.344 H12 A1A55 40 A1A55 H16 H13 H 0 1 N N N N N N -8.683 21.779 -28.746 -6.299 0.526 1.433 H16 A1A55 41 A1A55 H15 H14 H 0 1 N N N N N N -10.273 22.316 -28.105 -6.968 -1.123 1.198 H15 A1A55 42 A1A55 H22 H15 H 0 1 N N N N N N -13.320 13.643 -29.513 1.595 -3.454 -1.008 H22 A1A55 43 A1A55 H23 H16 H 0 1 N N N N N N -12.577 11.816 -30.997 3.763 -2.295 -0.930 H23 A1A55 44 A1A55 H3 H17 H 0 1 N N N N N N -11.394 8.829 -35.053 7.373 -0.755 1.655 H3 A1A55 45 A1A55 H2 H18 H 0 1 N N N N N N -10.811 7.967 -33.589 7.819 -1.249 0.004 H2 A1A55 46 A1A55 H4 H19 H 0 1 N N N N N N -9.738 7.064 -35.650 8.977 0.918 -0.331 H4 A1A55 47 A1A55 H6 H20 H 0 1 N N N N N N -9.106 8.699 -36.041 8.531 1.412 1.319 H6 A1A55 48 A1A55 H5 H21 H 0 1 N N N N N N -8.522 7.837 -34.577 9.645 0.047 1.069 H5 A1A55 49 A1A55 H7 H22 H 0 1 N N N N N N -9.295 11.970 -32.773 4.229 1.185 -0.816 H7 A1A55 50 A1A55 H20 H23 H 0 1 N N N N N N -8.254 13.677 -32.551 2.181 2.366 0.021 H20 A1A55 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A55 C3 C2 SING N N 1 A1A55 C2 N1 SING N N 2 A1A55 N1 C1 SING N N 3 A1A55 C1 N2 SING N N 4 A1A55 C1 O1 DOUB N N 5 A1A55 N2 C4 SING N N 6 A1A55 N7 C16 SING Y N 7 A1A55 N7 C5 SING Y N 8 A1A55 N6 C16 DOUB Y N 9 A1A55 N6 C15 SING Y N 10 A1A55 O2 C14 DOUB N N 11 A1A55 C4 C5 DOUB Y N 12 A1A55 C4 C19 SING Y N 13 A1A55 C16 C7 SING Y N 14 A1A55 C5 C6 SING Y N 15 A1A55 C15 N5 DOUB Y N 16 A1A55 C19 C18 DOUB Y N 17 A1A55 C7 C6 SING Y N 18 A1A55 C7 C8 DOUB Y N 19 A1A55 C14 C13 SING N N 20 A1A55 C14 N4 SING N N 21 A1A55 C6 C17 DOUB Y N 22 A1A55 N5 C8 SING Y N 23 A1A55 C8 N3 SING N N 24 A1A55 C13 C12 SING N N 25 A1A55 C18 C17 SING Y N 26 A1A55 N4 N3 SING N N 27 A1A55 N4 C9 SING N N 28 A1A55 C12 C9 SING N N 29 A1A55 C9 C10 SING N N 30 A1A55 C9 C11 SING N N 31 A1A55 N1 H1 SING N N 32 A1A55 N3 H8 SING N N 33 A1A55 C10 H10 SING N N 34 A1A55 C10 H11 SING N N 35 A1A55 C10 H9 SING N N 36 A1A55 C13 H18 SING N N 37 A1A55 C13 H17 SING N N 38 A1A55 C15 H19 SING N N 39 A1A55 C17 H21 SING N N 40 A1A55 C11 H14 SING N N 41 A1A55 C11 H13 SING N N 42 A1A55 C11 H12 SING N N 43 A1A55 C12 H16 SING N N 44 A1A55 C12 H15 SING N N 45 A1A55 C18 H22 SING N N 46 A1A55 C19 H23 SING N N 47 A1A55 C2 H3 SING N N 48 A1A55 C2 H2 SING N N 49 A1A55 C3 H4 SING N N 50 A1A55 C3 H6 SING N N 51 A1A55 C3 H5 SING N N 52 A1A55 N2 H7 SING N N 53 A1A55 N7 H20 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A55 SMILES ACDLabs 14.52 "CCNC(=O)Nc1cccc2c3c(ncnc3[NH]c21)NN1C(=O)CCC1(C)C" A1A55 InChI InChI 1.06 "InChI=1S/C19H23N7O2/c1-4-20-18(28)23-12-7-5-6-11-14-16(24-15(11)12)21-10-22-17(14)25-26-13(27)8-9-19(26,2)3/h5-7,10H,4,8-9H2,1-3H3,(H2,20,23,28)(H2,21,22,24,25)" A1A55 InChIKey InChI 1.06 HBWCYQWGCNBURO-UHFFFAOYSA-N A1A55 SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)Nc1cccc2c1[nH]c3ncnc(NN4C(=O)CCC4(C)C)c23" A1A55 SMILES CACTVS 3.385 "CCNC(=O)Nc1cccc2c1[nH]c3ncnc(NN4C(=O)CCC4(C)C)c23" A1A55 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)Nc1cccc2c1[nH]c3c2c(ncn3)NN4C(=O)CCC4(C)C" A1A55 SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)Nc1cccc2c1[nH]c3c2c(ncn3)NN4C(=O)CCC4(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A55 "SYSTEMATIC NAME" ACDLabs 14.52 "N-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}-N'-ethylurea" A1A55 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[(2,2-dimethyl-5-oxidanylidene-pyrrolidin-1-yl)amino]-9~{H}-pyrimido[4,5-b]indol-8-yl]-3-ethyl-urea" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1A55 _pdbx_chem_comp_synonyms.name AVI-4206 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A55 "Create component" 2024-09-10 RCSB A1A55 "Initial release" 2025-11-12 RCSB #