data_A1A56 # _chem_comp.id A1A56 _chem_comp.name "(3S)-3-hydroxy-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-10 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A56 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HCR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A56 N2 N1 N 0 1 N N N N N N 15.240 0.982 1.913 0.187 -0.435 0.465 N2 A1A56 1 A1A56 C3 C1 C 0 1 N N N N N N 15.275 0.189 -0.392 2.041 -1.471 -0.648 C3 A1A56 2 A1A56 C6 C2 C 0 1 Y N N N N N 15.047 -0.112 5.384 -2.086 2.309 0.186 C6 A1A56 3 A1A56 C9 C3 C 0 1 Y N N N N N 15.536 3.729 3.885 -2.632 -1.758 -0.025 C9 A1A56 4 A1A56 C1 C4 C 0 1 N N N N N N 13.294 1.792 -0.560 3.610 0.462 -0.394 C1 A1A56 5 A1A56 C10 C5 C 0 1 Y N N N N N 15.584 4.328 5.141 -3.956 -1.743 -0.249 C10 A1A56 6 A1A56 C11 C6 C 0 1 N N N N N N 15.229 2.151 1.004 1.347 0.469 0.677 C11 A1A56 7 A1A56 C2 C7 C 0 1 N N S N N N 14.811 1.664 -0.416 2.579 -0.385 0.306 C2 A1A56 8 A1A56 C4 C8 C 0 1 N N N N N N 15.160 -0.254 1.102 0.529 -1.183 -0.773 C4 A1A56 9 A1A56 C5 C9 C 0 1 Y N N N N N 15.216 1.051 3.319 -0.981 0.287 0.300 C5 A1A56 10 A1A56 C7 C10 C 0 1 Y N N N N N 15.313 2.120 5.479 -3.365 0.415 -0.081 C7 A1A56 11 A1A56 C8 C11 C 0 1 Y N N N N N 15.352 2.289 4.058 -2.205 -0.365 0.086 C8 A1A56 12 A1A56 N1 N2 N 0 1 N N N N N N 12.729 2.676 -1.485 4.901 0.075 -0.411 N1 A1A56 13 A1A56 N3 N3 N 0 1 Y N N N N N 15.086 -0.118 4.011 -0.972 1.616 0.342 N3 A1A56 14 A1A56 N4 N4 N 0 1 Y N N N N N 15.159 0.957 6.152 -3.255 1.741 -0.017 N4 A1A56 15 A1A56 N5 N5 N 0 1 Y N N N N N 15.442 3.331 6.080 -4.407 -0.449 -0.275 N5 A1A56 16 A1A56 O1 O1 O 0 1 N N N N N N 12.604 1.097 0.171 3.279 1.492 -0.941 O1 A1A56 17 A1A56 O2 O2 O 0 1 N N N N N N 15.481 2.447 -1.381 3.140 -0.984 1.475 O2 A1A56 18 A1A56 H4 H1 H 0 1 N N N N N N 14.626 -0.430 -1.029 2.523 -1.392 -1.622 H4 A1A56 19 A1A56 H5 H2 H 0 1 N N N N N N 16.315 0.106 -0.740 2.204 -2.463 -0.225 H5 A1A56 20 A1A56 H8 H3 H 0 1 N N N N N N 14.913 -1.063 5.878 -2.035 3.387 0.232 H8 A1A56 21 A1A56 H9 H4 H 0 1 N N N N N N 15.621 4.243 2.939 -2.001 -2.632 0.049 H9 A1A56 22 A1A56 H10 H5 H 0 1 N N N N N N 15.710 5.382 5.342 -4.574 -2.619 -0.379 H10 A1A56 23 A1A56 H13 H6 H 0 1 N N N N N N 16.233 2.599 0.963 1.276 1.338 0.024 H13 A1A56 24 A1A56 H12 H7 H 0 1 N N N N N N 14.508 2.898 1.368 1.399 0.781 1.720 H12 A1A56 25 A1A56 H7 H8 H 0 1 N N N N N N 14.199 -0.761 1.275 -0.033 -2.116 -0.821 H7 A1A56 26 A1A56 H6 H9 H 0 1 N N N N N N 15.985 -0.933 1.362 0.330 -0.572 -1.653 H6 A1A56 27 A1A56 H2 H10 H 0 1 N N N N N N 11.735 2.752 -1.561 5.166 -0.749 0.027 H2 A1A56 28 A1A56 H1 H11 H 0 1 N N N N N N 13.319 3.232 -2.070 5.565 0.620 -0.861 H1 A1A56 29 A1A56 H11 H12 H 0 1 N N N N N N 15.435 3.478 7.069 -5.329 -0.184 -0.421 H11 A1A56 30 A1A56 H3 H13 H 0 1 N N N N N N 16.420 2.351 -1.271 3.904 -1.551 1.299 H3 A1A56 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A56 N1 C1 SING N N 1 A1A56 O2 C2 SING N N 2 A1A56 C1 C2 SING N N 3 A1A56 C1 O1 DOUB N N 4 A1A56 C2 C3 SING N N 5 A1A56 C2 C11 SING N N 6 A1A56 C3 C4 SING N N 7 A1A56 C11 N2 SING N N 8 A1A56 C4 N2 SING N N 9 A1A56 N2 C5 SING N N 10 A1A56 C5 N3 DOUB Y N 11 A1A56 C5 C8 SING Y N 12 A1A56 C9 C8 SING Y N 13 A1A56 C9 C10 DOUB Y N 14 A1A56 N3 C6 SING Y N 15 A1A56 C8 C7 DOUB Y N 16 A1A56 C10 N5 SING Y N 17 A1A56 C6 N4 DOUB Y N 18 A1A56 C7 N5 SING Y N 19 A1A56 C7 N4 SING Y N 20 A1A56 C3 H4 SING N N 21 A1A56 C3 H5 SING N N 22 A1A56 C6 H8 SING N N 23 A1A56 C9 H9 SING N N 24 A1A56 C10 H10 SING N N 25 A1A56 C11 H13 SING N N 26 A1A56 C11 H12 SING N N 27 A1A56 C4 H7 SING N N 28 A1A56 C4 H6 SING N N 29 A1A56 N1 H2 SING N N 30 A1A56 N1 H1 SING N N 31 A1A56 N5 H11 SING N N 32 A1A56 O2 H3 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A56 SMILES ACDLabs 14.52 "NC(=O)C1(O)CCN(C1)c1ncnc2[NH]ccc12" A1A56 InChI InChI 1.06 "InChI=1S/C11H13N5O2/c12-10(17)11(18)2-4-16(5-11)9-7-1-3-13-8(7)14-6-15-9/h1,3,6,18H,2,4-5H2,(H2,12,17)(H,13,14,15)/t11-/m0/s1" A1A56 InChIKey InChI 1.06 DQFPKPPBDKQWIB-NSHDSACASA-N A1A56 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@]1(O)CCN(C1)c2ncnc3[nH]ccc23" A1A56 SMILES CACTVS 3.385 "NC(=O)[C]1(O)CCN(C1)c2ncnc3[nH]ccc23" A1A56 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@](C3)(C(=O)N)O" A1A56 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C3)(C(=O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A56 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-hydroxy-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidine-3-carboxamide" A1A56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-oxidanyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A56 "Create component" 2024-09-10 RCSB A1A56 "Initial release" 2025-06-11 RCSB #