data_A1A5U # _chem_comp.id A1A5U _chem_comp.name "4-[2-(4-methylphenyl)-5-{[(3R)-pyrrolidin-3-yl]methoxy}pyridin-3-yl]benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-10 _chem_comp.pdbx_modified_date 2025-09-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 369.459 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DBP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A5U C01 C1 C 0 1 Y N N N N N 9.159 -49.655 -37.939 3.245 3.568 -0.343 C01 A1A5U 1 A1A5U C02 C2 C 0 1 Y N N N N N 8.329 -50.008 -36.883 1.999 2.991 -0.478 C02 A1A5U 2 A1A5U C03 C3 C 0 1 Y N N N N N 7.181 -50.779 -37.111 1.744 1.747 0.099 C03 A1A5U 3 A1A5U C04 C4 C 0 1 Y N N N N N 6.247 -51.185 -35.925 0.409 1.121 -0.043 C04 A1A5U 4 A1A5U C05 C5 C 0 1 Y N N N N N 6.042 -52.547 -35.623 0.301 -0.274 -0.164 C05 A1A5U 5 A1A5U C06 C6 C 0 1 Y N N N N N 6.725 -53.683 -36.486 1.513 -1.126 -0.152 C06 A1A5U 6 A1A5U C07 C7 C 0 1 Y N N N N N 5.928 -54.620 -37.153 1.577 -2.235 0.693 C07 A1A5U 7 A1A5U C08 C8 C 0 1 Y N N N N N 6.535 -55.635 -37.937 2.702 -3.028 0.704 C08 A1A5U 8 A1A5U C09 C9 C 0 1 Y N N N N N 7.935 -55.688 -38.048 3.781 -2.722 -0.130 C09 A1A5U 9 A1A5U C10 C10 C 0 1 N N N N N N 8.568 -56.756 -38.877 4.951 -3.546 -0.120 C10 A1A5U 10 A1A5U C11 C11 C 0 1 Y N N N N N 8.736 -54.749 -37.388 3.715 -1.611 -0.976 C11 A1A5U 11 A1A5U C12 C12 C 0 1 Y N N N N N 8.130 -53.742 -36.604 2.587 -0.823 -0.990 C12 A1A5U 12 A1A5U C13 C13 C 0 1 N N N N N N 9.713 -49.744 -40.493 5.601 3.549 0.501 C13 A1A5U 13 A1A5U C14 C14 C 0 1 Y N N N N N 8.854 -50.080 -39.241 4.242 2.913 0.357 C14 A1A5U 14 A1A5U C15 C15 C 0 1 Y N N N N N 5.207 -52.878 -34.559 -0.966 -0.844 -0.296 C15 A1A5U 15 A1A5U C16 C16 C 0 1 Y N N N N N 4.599 -51.812 -33.804 -2.071 -0.002 -0.301 C16 A1A5U 16 A1A5U C17 C17 C 0 1 N N N N N N 3.549 -53.387 -32.282 -4.408 0.417 -0.424 C17 A1A5U 17 A1A5U C18 C18 C 0 1 Y N N N N N 7.726 -50.840 -39.453 3.997 1.676 0.926 C18 A1A5U 18 A1A5U C19 C19 C 0 1 Y N N N N N 4.856 -50.499 -34.161 -1.883 1.370 -0.176 C19 A1A5U 19 A1A5U C20 C20 C 0 1 Y N N N N N 6.891 -51.190 -38.395 2.751 1.094 0.808 C20 A1A5U 20 A1A5U C21 C21 C 0 1 N N R N N N 2.109 -53.597 -32.164 -5.729 -0.340 -0.575 C21 A1A5U 21 A1A5U C22 C22 C 0 1 N N N N N N 1.523 -52.572 -31.165 -6.913 0.653 -0.628 C22 A1A5U 22 A1A5U C23 C23 C 0 1 N N N N N N 0.300 -53.023 -30.941 -8.007 -0.068 0.200 C23 A1A5U 23 A1A5U C24 C24 C 0 1 N N N N N N 1.638 -54.905 -31.464 -5.991 -1.212 0.668 C24 A1A5U 24 A1A5U N01 N1 N 0 1 Y N N N N N 5.661 -50.217 -35.195 -0.677 1.882 -0.048 N01 A1A5U 25 A1A5U N02 N2 N 0 1 N N N N N N 9.044 -57.572 -39.510 5.880 -4.200 -0.111 N02 A1A5U 26 A1A5U N03 N3 N 0 1 N N N N N N 0.604 -54.577 -30.669 -7.235 -0.714 1.293 N03 A1A5U 27 A1A5U O01 O1 O 0 1 N N N N N N 3.728 -52.037 -32.692 -3.323 -0.514 -0.427 O01 A1A5U 28 A1A5U H01 H1 H 0 1 N N N N N N 10.038 -49.054 -37.758 3.444 4.531 -0.789 H01 A1A5U 29 A1A5U H02 H2 H 0 1 N N N N N N 8.570 -49.687 -35.880 1.223 3.501 -1.028 H02 A1A5U 30 A1A5U H03 H3 H 0 1 N N N N N N 4.852 -54.571 -37.071 0.744 -2.471 1.338 H03 A1A5U 31 A1A5U H04 H4 H 0 1 N N N N N N 5.923 -56.364 -38.447 2.752 -3.886 1.359 H04 A1A5U 32 A1A5U H07 H5 H 0 1 N N N N N N 9.811 -54.794 -37.478 4.548 -1.374 -1.622 H07 A1A5U 33 A1A5U H08 H6 H 0 1 N N N N N N 8.744 -53.015 -36.093 2.536 0.036 -1.644 H08 A1A5U 34 A1A5U H12 H7 H 0 1 N N N N N N 9.361 -48.802 -40.938 5.622 4.162 1.402 H12 A1A5U 35 A1A5U H13 H8 H 0 1 N N N N N N 10.767 -49.638 -40.197 6.361 2.771 0.573 H13 A1A5U 36 A1A5U H11 H9 H 0 1 N N N N N N 9.619 -50.555 -41.230 5.803 4.174 -0.369 H11 A1A5U 37 A1A5U H14 H10 H 0 1 N N N N N N 5.019 -53.911 -34.305 -1.085 -1.913 -0.391 H14 A1A5U 38 A1A5U H15 H11 H 0 1 N N N N N N 3.973 -54.071 -33.032 -4.292 1.113 -1.253 H15 A1A5U 39 A1A5U H16 H12 H 0 1 N N N N N N 4.039 -53.558 -31.312 -4.411 0.968 0.517 H16 A1A5U 40 A1A5U H17 H13 H 0 1 N N N N N N 7.485 -51.169 -40.453 4.779 1.169 1.472 H17 A1A5U 41 A1A5U H18 H14 H 0 1 N N N N N N 4.403 -49.694 -33.601 -2.741 2.026 -0.180 H18 A1A5U 42 A1A5U H19 H15 H 0 1 N N N N N N 6.011 -51.787 -38.581 2.561 0.128 1.253 H19 A1A5U 43 A1A5U H20 H16 H 0 1 N N N N N N 1.611 -53.496 -33.140 -5.710 -0.957 -1.473 H20 A1A5U 44 A1A5U H22 H17 H 0 1 N N N N N N 2.110 -52.550 -30.235 -6.642 1.602 -0.165 H22 A1A5U 45 A1A5U H21 H18 H 0 1 N N N N N N 1.496 -51.565 -31.606 -7.244 0.803 -1.655 H21 A1A5U 46 A1A5U H1 H19 H 0 1 N N N N N N -0.157 -52.539 -30.065 -8.719 0.651 0.605 H1 A1A5U 47 A1A5U H23 H20 H 0 1 N N N N N N -0.351 -52.884 -31.817 -8.517 -0.817 -0.405 H23 A1A5U 48 A1A5U H27 H21 H 0 1 N N N N N N 1.317 -55.641 -32.216 -6.115 -2.253 0.371 H27 A1A5U 49 A1A5U H26 H22 H 0 1 N N N N N N 2.457 -55.327 -30.863 -5.161 -1.119 1.368 H26 A1A5U 50 A1A5U H2 H23 H 0 1 N N N N N N -0.197 -55.131 -30.896 -7.760 -1.470 1.707 H2 A1A5U 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A5U C13 C14 SING N N 1 A1A5U N02 C10 TRIP N N 2 A1A5U C18 C14 DOUB Y N 3 A1A5U C18 C20 SING Y N 4 A1A5U C14 C01 SING Y N 5 A1A5U C10 C09 SING N N 6 A1A5U C20 C03 DOUB Y N 7 A1A5U C09 C08 DOUB Y N 8 A1A5U C09 C11 SING Y N 9 A1A5U C01 C02 DOUB Y N 10 A1A5U C08 C07 SING Y N 11 A1A5U C11 C12 DOUB Y N 12 A1A5U C07 C06 DOUB Y N 13 A1A5U C03 C02 SING Y N 14 A1A5U C03 C04 SING N N 15 A1A5U C12 C06 SING Y N 16 A1A5U C06 C05 SING N N 17 A1A5U C04 C05 DOUB Y N 18 A1A5U C04 N01 SING Y N 19 A1A5U C05 C15 SING Y N 20 A1A5U N01 C19 DOUB Y N 21 A1A5U C15 C16 DOUB Y N 22 A1A5U C19 C16 SING Y N 23 A1A5U C16 O01 SING N N 24 A1A5U O01 C17 SING N N 25 A1A5U C17 C21 SING N N 26 A1A5U C21 C24 SING N N 27 A1A5U C21 C22 SING N N 28 A1A5U C24 N03 SING N N 29 A1A5U C22 C23 SING N N 30 A1A5U C23 N03 SING N N 31 A1A5U C01 H01 SING N N 32 A1A5U C02 H02 SING N N 33 A1A5U C07 H03 SING N N 34 A1A5U C08 H04 SING N N 35 A1A5U C11 H07 SING N N 36 A1A5U C12 H08 SING N N 37 A1A5U C13 H12 SING N N 38 A1A5U C13 H13 SING N N 39 A1A5U C13 H11 SING N N 40 A1A5U C15 H14 SING N N 41 A1A5U C17 H15 SING N N 42 A1A5U C17 H16 SING N N 43 A1A5U C18 H17 SING N N 44 A1A5U C19 H18 SING N N 45 A1A5U C20 H19 SING N N 46 A1A5U C21 H20 SING N N 47 A1A5U C22 H22 SING N N 48 A1A5U C22 H21 SING N N 49 A1A5U C23 H1 SING N N 50 A1A5U C23 H23 SING N N 51 A1A5U C24 H27 SING N N 52 A1A5U C24 H26 SING N N 53 A1A5U N03 H2 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A5U SMILES ACDLabs 14.52 "N#Cc1ccc(cc1)c1cc(cnc1c1ccc(C)cc1)OCC1CCNC1" A1A5U InChI InChI 1.06 "InChI=1S/C24H23N3O/c1-17-2-6-21(7-3-17)24-23(20-8-4-18(13-25)5-9-20)12-22(15-27-24)28-16-19-10-11-26-14-19/h2-9,12,15,19,26H,10-11,14,16H2,1H3/t19-/m1/s1" A1A5U InChIKey InChI 1.06 IQVDLEXWAPYWDT-LJQANCHMSA-N A1A5U SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1)c2ncc(OC[C@@H]3CCNC3)cc2c4ccc(cc4)C#N" A1A5U SMILES CACTVS 3.385 "Cc1ccc(cc1)c2ncc(OC[CH]3CCNC3)cc2c4ccc(cc4)C#N" A1A5U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1)c2c(cc(cn2)OC[C@@H]3CCNC3)c4ccc(cc4)C#N" A1A5U SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1)c2c(cc(cn2)OCC3CCNC3)c4ccc(cc4)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A5U "SYSTEMATIC NAME" ACDLabs 14.52 "4-[2-(4-methylphenyl)-5-{[(3R)-pyrrolidin-3-yl]methoxy}pyridin-3-yl]benzonitrile" A1A5U "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[2-(4-methylphenyl)-5-[[(3~{R})-pyrrolidin-3-yl]methoxy]pyridin-3-yl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A5U "Create component" 2024-09-10 RCSB A1A5U "Other modification" 2024-10-31 RCSB A1A5U "Initial release" 2025-09-17 RCSB #